Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69883 * 2 1 4 4 C 1.53195 * 109.58805 * 120.35284 * 2 1 3 5 5 C 1.53038 * 109.31077 * 174.42767 * 4 2 1 6 6 H 1.08996 * 109.45317 * 58.64560 * 5 4 2 7 7 N 1.46504 * 109.45861 * 178.61566 * 5 4 2 8 8 C 1.34770 * 119.99977 * 205.06681 * 7 5 4 9 9 O 1.21631 * 120.00244 * 359.97438 * 8 7 5 10 10 C 1.47270 * 120.00222 * 179.97438 * 8 7 5 11 11 C 1.46684 * 126.94021 * 0.11688 * 10 8 7 12 12 C 1.34479 * 106.33078 * 180.29535 * 11 10 8 13 13 N 1.36446 * 108.86091 * 359.76121 * 12 11 10 14 14 H 0.97001 * 124.85640 * 180.02562 * 13 12 11 15 15 C 1.34657 * 110.29417 * 359.97438 * 13 12 11 16 16 C 1.53038 * 109.53601 * 298.63111 * 5 4 2 17 17 C 1.53192 * 109.31248 * 61.36797 * 16 5 4 18 18 N 1.46914 * 108.77622 * 305.36514 * 17 16 5 19 19 C 1.36945 * 120.63150 * 233.62864 * 18 17 16 20 20 H 1.07998 * 119.99731 * 150.16397 * 19 18 17 21 21 C 1.38811 * 119.99965 * 330.16273 * 19 18 17 22 22 N 1.31619 * 119.99630 * 344.50004 * 21 19 18 23 23 Si 1.86797 * 119.99774 * 164.49613 * 21 19 18 24 24 H 1.48500 * 109.47279 * 60.00244 * 23 21 19 25 25 H 1.48501 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47144 * 300.00067 * 23 21 19 27 27 H 1.09007 * 109.46971 * 180.35970 * 1 2 3 28 28 H 1.09003 * 109.47220 * 300.35544 * 1 2 3 29 29 H 1.08998 * 109.47194 * 60.35854 * 1 2 3 30 30 H 1.08994 * 109.49749 * 54.47243 * 4 2 1 31 31 H 1.09005 * 109.49476 * 294.37679 * 4 2 1 32 32 H 0.96997 * 120.00065 * 25.05904 * 7 5 4 33 33 H 1.08005 * 126.83182 * 0.02562 * 11 10 8 34 34 H 1.08009 * 125.57395 * 179.75748 * 12 11 10 35 35 H 1.07998 * 125.80075 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.49941 * 181.32019 * 16 5 4 37 37 H 1.08996 * 109.50043 * 301.38135 * 16 5 4 38 38 H 1.08996 * 109.58613 * 65.15543 * 17 16 5 39 39 H 1.09003 * 109.58417 * 185.43048 * 17 16 5 40 40 H 0.97003 * 119.99755 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 4.0059 0.1476 1.0992 7 7 4.0653 -1.5155 2.3754 8 6 5.3290 -1.3008 2.7916 9 8 6.0565 -0.5529 2.1663 10 6 5.8293 -1.9715 4.0035 11 6 5.0900 -2.8989 4.8666 12 6 5.9348 -3.2548 5.8505 13 7 7.1294 -2.6251 5.6554 14 1 7.9053 -2.7176 6.2302 15 6 7.0778 -1.8577 4.5501 16 6 3.9570 -1.6655 -0.0634 17 6 3.4651 -0.9469 -1.3237 18 7 2.0227 -0.6995 -1.1944 19 6 1.1537 -1.1136 -2.1685 20 1 0.1398 -1.3807 -1.9096 21 6 1.5761 -1.1898 -3.4886 22 7 2.6867 -0.5890 -3.8599 23 14 0.5682 -2.1453 -4.7379 24 1 -0.7923 -1.5575 -4.8300 25 1 1.2289 -2.0734 -6.0659 26 1 0.4667 -3.5640 -4.3111 27 1 -0.3633 -1.0277 0.0065 28 1 -0.3634 0.5194 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 1.6031 -1.7252 1.2914 31 1 1.7660 -0.1667 2.1369 32 1 3.4853 -2.1121 2.8740 33 1 4.0688 -3.2269 4.7398 34 1 5.7053 -3.9289 6.6626 35 1 7.8836 -1.2510 4.1640 36 1 5.0412 -1.7694 -0.1036 37 1 3.4990 -2.6529 -0.0048 38 1 3.9903 0.0021 -1.4317 39 1 3.6542 -1.5706 -2.1973 40 1 2.9821 -0.6426 -4.7823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947323415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = 25.276283 kcal Electronic energy + Delta-G solvation = -21597.318344 eV Core-core repulsion = 18413.088815 eV Total energy + Delta-G solvation = -3184.229529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18304 -39.12611 -37.38286 -34.37782 -32.35778 -31.62656 -30.70863 -29.41658 -29.04721 -26.28947 -24.85496 -23.06527 -21.74556 -20.85908 -20.29633 -19.63030 -19.10614 -18.59310 -16.34573 -15.78435 -15.57164 -14.96305 -14.76614 -13.99590 -13.97443 -13.78123 -13.66942 -13.38727 -13.17915 -13.13628 -12.68674 -12.52164 -12.15676 -11.51963 -11.12953 -11.01072 -10.84881 -10.79643 -10.58689 -10.24904 -10.03762 -9.95715 -9.68734 -9.62663 -9.25423 -8.99968 -8.60172 -8.44890 -8.28461 -6.55589 -5.70212 -3.14341 1.80920 2.30034 3.00823 3.42652 3.48827 3.49422 3.73929 3.80933 4.55129 4.77425 4.99294 5.13934 5.32563 5.39067 5.48321 5.51786 5.70881 5.71774 5.88670 5.93887 6.12010 6.25191 6.37749 6.39903 6.51211 6.56492 6.58840 6.62971 6.73604 6.78142 6.91636 7.04910 7.14602 7.18270 7.25089 7.47987 7.77389 7.88887 7.99496 8.54541 8.69385 9.29777 9.93584 10.51474 11.38441 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031661 B = 0.003817 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.147569 B = 7334.195622 C = 7598.692889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.080 0.920 7 N -0.719 5.719 8 C 0.585 3.415 9 O -0.554 6.554 10 C -0.228 4.228 11 C -0.170 4.170 12 C -0.021 4.021 13 N -0.557 5.557 14 H 0.416 0.584 15 C 0.069 3.931 16 C -0.146 4.146 17 C 0.176 3.824 18 N -0.588 5.588 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.394 0.606 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.087 0.913 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -5.001 19.914 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.098 0.902 7 N -0.368 5.368 8 C 0.373 3.627 9 O -0.434 6.434 10 C -0.238 4.238 11 C -0.195 4.195 12 C -0.149 4.149 13 N -0.152 5.152 14 H 0.252 0.748 15 C -0.067 4.067 16 C -0.186 4.186 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.211 1.211 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.194 0.806 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.938 -4.469 19.357 20.735 hybrid contribution -0.368 -0.934 -0.155 1.016 sum 5.570 -5.403 19.202 20.711 Atomic orbital electron populations 1.21790 0.95838 1.01316 1.00299 1.20362 0.92991 0.93597 0.86682 0.95575 1.22373 0.93899 1.01535 0.99542 1.20997 0.94046 0.96739 0.83355 0.90170 1.46080 1.13164 1.48627 1.28949 1.17390 0.81772 0.80558 0.83024 1.90774 1.56664 1.38349 1.57602 1.20551 0.95604 1.07264 1.00367 1.22090 0.99789 1.01387 0.96189 1.21752 0.86068 1.03953 1.03141 1.41632 1.13557 1.37202 1.22759 0.74762 1.21852 0.98882 0.97286 0.88655 1.22561 0.99743 0.99525 0.96816 1.20720 0.83215 0.97247 0.93871 1.44151 1.02985 1.64926 1.19050 1.19122 0.95179 1.37691 0.86128 0.91361 1.25103 0.97907 0.99584 0.96979 1.70021 1.24103 1.43754 1.16744 0.86410 0.79593 0.80223 0.80747 1.20959 1.21727 1.21114 0.92833 0.94342 0.91888 0.91887 0.92738 0.77290 0.83775 0.81548 0.80630 0.92900 0.92773 0.96194 0.89496 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.95 37.16 0.30 -2.24 16 2 C 0.17 3.59 3.50 -67.60 -0.24 3.35 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.34 4.84 -26.61 -0.13 -2.47 16 5 C 0.15 2.83 2.42 -67.89 -0.16 2.67 16 6 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 7 N -0.72 -11.31 5.07 -54.89 -0.28 -11.59 16 8 C 0.58 9.86 7.77 -12.59 -0.10 9.76 16 9 O -0.55 -11.45 16.57 5.25 0.09 -11.36 16 10 C -0.23 -3.02 6.29 -103.35 -0.65 -3.67 16 11 C -0.17 -1.75 10.56 -37.50 -0.40 -2.15 16 12 C -0.02 -0.17 11.88 -16.83 -0.20 -0.37 16 13 N -0.56 -4.07 5.90 -12.85 -0.08 -4.15 16 14 H 0.42 1.51 8.96 -40.82 -0.37 1.14 16 15 C 0.07 0.74 11.69 -16.84 -0.20 0.54 16 16 C -0.15 -3.07 5.65 -26.61 -0.15 -3.22 16 17 C 0.18 4.39 5.28 -3.72 -0.02 4.37 16 18 N -0.59 -14.76 2.99 -164.78 -0.49 -15.25 16 19 C -0.25 -6.82 8.57 -15.06 -0.13 -6.94 16 20 H 0.07 1.79 6.24 -52.49 -0.33 1.46 16 21 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 22 N -0.90 -26.60 11.23 55.49 0.62 -25.98 16 23 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.05 1.01 7.44 -51.92 -0.39 0.62 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.39 5.09 7.73 -40.82 -0.32 4.77 16 33 H 0.14 1.24 7.70 -52.48 -0.40 0.83 16 34 H 0.17 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -33.74 324.84 -8.28 -42.02 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.85 Total: 4.97 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.16 Total: -0.37 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.22 Total: -56.96 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.74 -8.28 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947323415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.297 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds