Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.69883 * 2 1 4 4 C 1.53195 * 109.58805 * 120.35284 * 2 1 3 5 5 C 1.53038 * 109.31077 * 174.42767 * 4 2 1 6 6 H 1.08996 * 109.45317 * 58.64560 * 5 4 2 7 7 N 1.46504 * 109.45861 * 178.61566 * 5 4 2 8 8 C 1.34770 * 119.99977 * 205.06681 * 7 5 4 9 9 O 1.21631 * 120.00244 * 359.97438 * 8 7 5 10 10 C 1.47270 * 120.00222 * 179.97438 * 8 7 5 11 11 C 1.46684 * 126.94021 * 0.11688 * 10 8 7 12 12 C 1.34479 * 106.33078 * 180.29535 * 11 10 8 13 13 N 1.36446 * 108.86091 * 359.76121 * 12 11 10 14 14 H 0.97001 * 124.85640 * 180.02562 * 13 12 11 15 15 C 1.34657 * 110.29417 * 359.97438 * 13 12 11 16 16 C 1.53038 * 109.53601 * 298.63111 * 5 4 2 17 17 C 1.53192 * 109.31248 * 61.36797 * 16 5 4 18 18 N 1.46914 * 108.77622 * 305.36514 * 17 16 5 19 19 C 1.36945 * 120.63150 * 233.62864 * 18 17 16 20 20 H 1.07998 * 119.99731 * 150.16397 * 19 18 17 21 21 C 1.38811 * 119.99965 * 330.16273 * 19 18 17 22 22 N 1.31619 * 119.99630 * 344.50004 * 21 19 18 23 23 Si 1.86797 * 119.99774 * 164.49613 * 21 19 18 24 24 H 1.48500 * 109.47279 * 60.00244 * 23 21 19 25 25 H 1.48501 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47144 * 300.00067 * 23 21 19 27 27 H 1.09007 * 109.46971 * 180.35970 * 1 2 3 28 28 H 1.09003 * 109.47220 * 300.35544 * 1 2 3 29 29 H 1.08998 * 109.47194 * 60.35854 * 1 2 3 30 30 H 1.08994 * 109.49749 * 54.47243 * 4 2 1 31 31 H 1.09005 * 109.49476 * 294.37679 * 4 2 1 32 32 H 0.96997 * 120.00065 * 25.05904 * 7 5 4 33 33 H 1.08005 * 126.83182 * 0.02562 * 11 10 8 34 34 H 1.08009 * 125.57395 * 179.75748 * 12 11 10 35 35 H 1.07998 * 125.80075 * 179.97438 * 15 13 12 36 36 H 1.08998 * 109.49941 * 181.32019 * 16 5 4 37 37 H 1.08996 * 109.50043 * 301.38135 * 16 5 4 38 38 H 1.08996 * 109.58613 * 65.15543 * 17 16 5 39 39 H 1.09003 * 109.58417 * 185.43048 * 17 16 5 40 40 H 0.97003 * 119.99755 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 4.0059 0.1476 1.0992 7 7 4.0653 -1.5155 2.3754 8 6 5.3290 -1.3008 2.7916 9 8 6.0565 -0.5529 2.1663 10 6 5.8293 -1.9715 4.0035 11 6 5.0900 -2.8989 4.8666 12 6 5.9348 -3.2548 5.8505 13 7 7.1294 -2.6251 5.6554 14 1 7.9053 -2.7176 6.2302 15 6 7.0778 -1.8577 4.5501 16 6 3.9570 -1.6655 -0.0634 17 6 3.4651 -0.9469 -1.3237 18 7 2.0227 -0.6995 -1.1944 19 6 1.1537 -1.1136 -2.1685 20 1 0.1398 -1.3807 -1.9096 21 6 1.5761 -1.1898 -3.4886 22 7 2.6867 -0.5890 -3.8599 23 14 0.5682 -2.1453 -4.7379 24 1 -0.7923 -1.5575 -4.8300 25 1 1.2289 -2.0734 -6.0659 26 1 0.4667 -3.5640 -4.3111 27 1 -0.3633 -1.0277 0.0065 28 1 -0.3634 0.5194 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 1.6031 -1.7252 1.2914 31 1 1.7660 -0.1667 2.1369 32 1 3.4853 -2.1121 2.8740 33 1 4.0688 -3.2269 4.7398 34 1 5.7053 -3.9289 6.6626 35 1 7.8836 -1.2510 4.1640 36 1 5.0412 -1.7694 -0.1036 37 1 3.4990 -2.6529 -0.0048 38 1 3.9903 0.0021 -1.4317 39 1 3.6542 -1.5706 -2.1973 40 1 2.9821 -0.6426 -4.7823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947323415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = 1.684015 kcal Electronic energy + Delta-G solvation = -21598.341381 eV Core-core repulsion = 18413.088815 eV Total energy + Delta-G solvation = -3185.252566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96403 -40.52764 -39.02402 -36.00858 -34.19813 -33.09091 -32.01184 -30.88942 -29.94789 -27.94779 -26.70964 -24.46412 -23.43305 -21.98856 -21.46798 -21.13635 -20.29217 -19.57675 -18.25363 -17.22634 -16.94645 -16.67811 -15.96300 -15.72035 -15.48794 -14.96732 -14.86436 -14.76892 -14.52564 -14.41140 -14.17356 -13.84185 -13.31288 -13.02924 -12.89422 -12.69978 -12.64782 -12.58693 -12.33809 -12.09192 -11.82994 -11.70218 -11.47345 -11.30252 -10.82686 -10.52168 -10.03349 -9.66035 -9.24417 -8.62298 -7.81540 -5.28803 0.83303 1.48978 1.51661 1.58028 1.61339 2.21119 2.54823 2.63582 2.66383 3.34603 3.61439 3.87958 4.08120 4.10880 4.22737 4.29987 4.41839 4.44409 4.57083 4.63832 4.73993 4.77865 4.85625 4.97676 5.02966 5.09988 5.12524 5.16730 5.23882 5.40607 5.50943 5.57112 5.65215 5.72248 5.74684 5.81215 6.00115 6.45221 6.68243 6.80841 7.18901 7.43779 7.90621 8.44718 9.25979 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031661 B = 0.003817 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.147569 B = 7334.195622 C = 7598.692889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.159 3.841 3 H 0.010 0.990 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.052 0.948 7 N -0.707 5.707 8 C 0.579 3.421 9 O -0.605 6.605 10 C -0.268 4.268 11 C -0.189 4.189 12 C -0.002 4.002 13 N -0.537 5.537 14 H 0.436 0.564 15 C 0.070 3.930 16 C -0.129 4.129 17 C 0.185 3.815 18 N -0.603 5.603 19 C -0.252 4.252 20 H 0.081 0.919 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.966 3.034 24 H -0.273 1.273 25 H -0.300 1.300 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.411 0.589 33 H 0.158 0.842 34 H 0.209 0.791 35 H 0.180 0.820 36 H 0.041 0.959 37 H 0.060 0.940 38 H -0.014 1.014 39 H 0.054 0.946 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -6.869 23.309 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.053 3.947 3 H 0.028 0.972 4 C -0.156 4.156 5 C 0.058 3.942 6 H 0.070 0.930 7 N -0.356 5.356 8 C 0.370 3.630 9 O -0.488 6.488 10 C -0.278 4.278 11 C -0.212 4.212 12 C -0.130 4.130 13 N -0.133 5.133 14 H 0.276 0.724 15 C -0.069 4.069 16 C -0.170 4.170 17 C 0.059 3.941 18 N -0.327 5.327 19 C -0.382 4.382 20 H 0.098 0.902 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.227 1.227 26 H -0.203 1.203 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.176 0.824 34 H 0.225 0.775 35 H 0.197 0.803 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.004 0.996 39 H 0.072 0.928 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.659 -6.373 22.837 24.163 hybrid contribution 0.086 -0.323 -1.102 1.151 sum 4.745 -6.696 21.735 23.233 Atomic orbital electron populations 1.21702 0.93688 1.01758 1.01141 1.20652 0.94827 0.92822 0.86444 0.97238 1.22176 0.92356 1.02232 0.98832 1.20631 0.95010 0.95050 0.83553 0.92960 1.45795 1.13379 1.48595 1.27868 1.18017 0.81383 0.79880 0.83740 1.90741 1.57876 1.40737 1.59483 1.20423 0.97518 1.09611 1.00266 1.22325 1.00980 1.01469 0.96471 1.22372 0.85053 1.02750 1.02836 1.41663 1.14427 1.35589 1.21639 0.72382 1.21939 0.98229 0.97354 0.89354 1.22303 0.98814 0.99573 0.96266 1.20410 0.83778 0.95329 0.94631 1.44410 1.02551 1.65611 1.20097 1.19537 0.95732 1.36359 0.86540 0.90158 1.25913 0.99185 1.00983 0.99065 1.70209 1.26179 1.45829 1.16593 0.85360 0.78312 0.79065 0.77835 1.19832 1.22656 1.20297 0.92512 0.90419 0.94127 0.90568 0.89371 0.75219 0.82397 0.77479 0.80325 0.94059 0.92092 0.99579 0.92788 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.95 71.98 0.57 -3.89 16 2 C 0.16 6.58 3.50 44.98 0.16 6.74 16 3 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 4 C -0.12 -3.85 4.84 30.67 0.15 -3.70 16 5 C 0.16 6.06 2.42 45.02 0.11 6.17 16 6 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 7 N -0.71 -21.64 5.07 -445.82 -2.26 -23.90 16 8 C 0.58 19.64 7.77 86.62 0.67 20.31 16 9 O -0.61 -26.05 16.57 -4.13 -0.07 -26.12 16 10 C -0.27 -6.77 6.29 -19.04 -0.12 -6.89 16 11 C -0.19 -3.32 10.56 23.62 0.25 -3.07 16 12 C 0.00 -0.02 11.88 83.11 0.99 0.97 16 13 N -0.54 -6.02 5.90 -194.56 -1.15 -7.16 16 14 H 0.44 1.48 8.96 -92.71 -0.83 0.65 16 15 C 0.07 1.38 11.69 83.92 0.98 2.36 16 16 C -0.13 -5.59 5.65 30.67 0.17 -5.42 16 17 C 0.19 9.75 5.28 86.36 0.46 10.21 16 18 N -0.60 -30.88 2.99 -675.24 -2.02 -32.89 16 19 C -0.25 -13.74 8.57 84.03 0.72 -13.02 16 20 H 0.08 4.13 6.24 -2.91 -0.02 4.12 16 21 C -0.06 -3.24 4.94 84.86 0.42 -2.82 16 22 N -0.94 -58.04 11.23 21.65 0.24 -57.80 16 23 Si 0.97 45.59 29.58 68.60 2.03 47.62 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H 0.06 1.97 7.44 -2.38 -0.02 1.96 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.60 7.63 -2.39 -0.02 1.59 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.38 8.14 -2.38 -0.02 2.37 16 32 H 0.41 9.70 7.73 -92.71 -0.72 8.98 16 33 H 0.16 2.18 7.70 -2.91 -0.02 2.16 16 34 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.05 3.17 6.15 -2.39 -0.01 3.16 16 40 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -77.77 324.84 1.82 -75.96 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.49 Total: 16.36 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.53 Total: 7.94 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -5.18 Total: -121.76 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.77 1.82 -75.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947323415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.640 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds