Wall clock time and date at job start Mon Mar 30 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.45569 * 2 1 4 4 C 1.53036 * 109.46036 * 119.96282 * 2 1 3 5 5 C 1.53194 * 109.31218 * 181.38758 * 4 2 1 6 6 N 1.46924 * 108.77356 * 305.36177 * 5 4 2 7 7 C 1.36935 * 120.63117 * 233.62987 * 6 5 4 8 8 H 1.08002 * 120.00081 * 27.67124 * 7 6 5 9 9 C 1.38815 * 120.00288 * 207.66433 * 7 6 5 10 10 N 1.31621 * 119.99487 * 17.36682 * 9 7 6 11 11 Si 1.86799 * 119.99959 * 197.36117 * 9 7 6 12 12 H 1.48493 * 109.47102 * 60.00689 * 11 9 7 13 13 H 1.48502 * 109.46896 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47237 * 299.99798 * 11 9 7 15 15 C 1.46930 * 118.74031 * 53.60929 * 6 5 4 16 16 C 1.53041 * 109.45685 * 240.03104 * 2 1 3 17 17 H 1.09000 * 109.49883 * 298.56136 * 16 2 1 18 18 N 1.46499 * 109.50260 * 58.63098 * 16 2 1 19 19 C 1.34777 * 120.00092 * 205.00153 * 18 16 2 20 20 O 1.21693 * 119.99879 * 359.97438 * 19 18 16 21 21 C 1.46676 * 119.99869 * 180.02562 * 19 18 16 22 22 C 1.37872 * 126.23009 * 179.68621 * 21 19 18 23 23 C 1.39839 * 107.08140 * 179.84276 * 22 21 19 24 24 C 1.35456 * 107.86661 * 0.41990 * 23 22 21 25 25 N 1.35529 * 108.86956 * 359.74073 * 24 23 22 26 26 H 0.97003 * 125.67729 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46954 * 299.97054 * 1 2 3 29 29 H 1.09002 * 109.46987 * 59.97010 * 1 2 3 30 30 H 1.09005 * 109.49406 * 301.33770 * 4 2 1 31 31 H 1.08995 * 109.50077 * 61.42972 * 4 2 1 32 32 H 1.09000 * 109.58191 * 185.57556 * 5 4 2 33 33 H 1.08999 * 109.70046 * 65.22233 * 5 4 2 34 34 H 0.96997 * 119.99492 * 179.97438 * 10 9 7 35 35 H 1.08990 * 109.58600 * 186.60354 * 15 6 5 36 36 H 1.09000 * 109.58232 * 66.17841 * 15 6 5 37 37 H 0.96999 * 119.99411 * 24.99742 * 18 16 2 38 38 H 1.07994 * 126.46097 * 359.97438 * 22 21 19 39 39 H 1.07999 * 126.06885 * 180.15551 * 23 22 21 40 40 H 1.07996 * 125.56514 * 179.71429 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5715 -0.6884 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9758 -2.2739 0.0001 8 1 5.0086 -2.9662 0.8285 9 6 5.8540 -2.4234 -1.0645 10 7 6.0603 -1.4217 -1.8930 11 14 6.7429 -4.0462 -1.3211 12 1 5.7474 -5.1294 -1.5225 13 1 7.6170 -3.9479 -2.5176 14 1 7.5716 -4.3509 -0.1271 15 6 3.5714 -0.6887 -1.2643 16 6 2.0399 -0.7208 -1.2501 17 1 1.6979 -1.7557 -1.2382 18 7 1.5250 -0.0494 -2.4460 19 6 1.3965 -0.7333 -3.6002 20 8 1.7086 -1.9085 -3.6490 21 6 0.8815 -0.0608 -4.7977 22 6 0.7040 -0.6317 -6.0401 23 6 0.1920 0.3625 -6.8796 24 6 0.0771 1.5006 -6.1540 25 7 0.4929 1.2567 -4.8873 26 1 0.5129 1.9029 -4.1642 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5143 -0.8897 30 1 1.6572 -0.2205 2.1398 31 1 1.6979 -1.7555 1.2385 32 1 3.9417 -1.2843 2.0985 33 1 3.9164 0.3403 1.3685 34 1 6.6742 -1.5261 -2.6367 35 1 3.9417 -1.2846 -2.0983 36 1 3.9144 0.3408 -1.3674 37 1 1.2765 0.8875 -2.4070 38 1 0.9179 -1.6545 -6.3129 39 1 -0.0624 0.2451 -7.9226 40 1 -0.2860 2.4478 -6.5245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965066536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:41 Heat of formation + Delta-G solvation = 0.729540 kcal Electronic energy + Delta-G solvation = -22120.353536 eV Core-core repulsion = 18935.059581 eV Total energy + Delta-G solvation = -3185.293955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.20574 -40.63360 -39.00416 -36.15139 -34.77277 -32.87897 -32.02823 -31.12294 -29.64528 -28.92967 -25.95691 -24.66747 -22.98865 -22.63069 -21.38080 -21.33397 -20.91071 -19.67023 -18.78593 -17.20094 -16.92227 -16.59237 -16.15196 -15.61213 -15.32404 -15.17137 -14.99818 -14.74743 -14.54463 -14.34602 -14.12725 -13.70458 -13.44919 -13.30405 -13.16763 -13.08929 -12.72938 -12.60862 -12.38083 -12.22001 -11.93975 -11.67329 -11.56046 -11.24684 -11.05716 -10.57100 -10.20455 -9.94618 -9.17284 -8.72061 -7.92125 -5.37517 0.49189 1.38579 1.45325 1.49568 1.86949 2.05907 2.27514 2.41158 2.47770 3.24628 3.69030 3.77001 3.94514 3.99110 4.13372 4.35080 4.42739 4.44918 4.51982 4.57264 4.63537 4.70056 4.89353 4.94945 5.08267 5.11690 5.14920 5.17892 5.23306 5.30823 5.38962 5.41990 5.50694 5.58819 5.73798 5.77151 5.92713 6.33491 6.51417 6.65984 7.08670 7.22099 7.82400 8.31134 9.12632 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.006052 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.989108 B = 4625.257653 C = 5955.910379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.267 4.267 8 H 0.069 0.931 9 C -0.050 4.050 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.265 1.265 15 C 0.178 3.822 16 C 0.141 3.859 17 H 0.049 0.951 18 N -0.703 5.703 19 C 0.578 3.422 20 O -0.584 6.584 21 C -0.080 4.080 22 C -0.133 4.133 23 C -0.228 4.228 24 C 0.050 3.950 25 N -0.525 5.525 26 H 0.431 0.569 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.247 0.753 35 H 0.042 0.958 36 H 0.000 1.000 37 H 0.407 0.593 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 11.636 -2.964 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.398 4.398 8 H 0.087 0.913 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.190 1.190 15 C 0.051 3.949 16 C 0.034 3.966 17 H 0.067 0.933 18 N -0.353 5.353 19 C 0.367 3.633 20 O -0.464 6.464 21 C -0.193 4.193 22 C -0.160 4.160 23 C -0.252 4.252 24 C -0.087 4.087 25 N -0.122 5.122 26 H 0.271 0.729 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.243 0.757 38 H 0.144 0.856 39 H 0.182 0.818 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.954 10.892 -2.899 19.534 hybrid contribution 1.059 -0.588 -0.146 1.220 sum -14.895 10.304 -3.046 18.366 Atomic orbital electron populations 1.21772 0.92925 1.01661 1.02828 1.21278 0.96943 0.99423 0.92702 0.90001 1.21974 0.95675 1.00251 0.97625 1.21185 0.93590 0.96248 0.87908 1.44227 1.48171 1.39855 1.01028 1.19479 1.09786 1.04117 1.06369 0.91344 1.25788 0.98620 1.00320 0.99817 1.70159 1.38412 1.30873 1.18172 0.85428 0.78034 0.80179 0.77439 1.21241 1.22002 1.18985 1.20790 0.89748 0.94997 0.89372 1.21535 0.94841 0.95904 0.84270 0.93311 1.45681 1.65642 1.14331 1.09686 1.17579 0.77122 0.85854 0.82747 1.90841 1.52501 1.18127 1.84904 1.20129 1.16351 0.86912 0.95912 1.21512 1.02232 1.00328 0.91958 1.21203 1.09856 0.92757 1.01355 1.22795 1.01527 1.01613 0.82760 1.41994 1.49209 1.08479 1.12532 0.72947 0.94002 0.90082 0.91971 0.88312 0.93222 0.92597 0.95906 0.94411 0.93982 0.98213 0.75709 0.85554 0.81829 0.76229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.02 71.98 0.65 -2.33 16 2 C -0.08 -2.49 2.27 -10.77 -0.02 -2.51 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -3.64 5.36 30.67 0.16 -3.48 16 5 C 0.14 5.53 6.52 86.36 0.56 6.10 16 6 N -0.61 -32.05 2.99 -699.09 -2.09 -34.14 16 7 C -0.27 -15.66 9.58 84.03 0.81 -14.86 16 8 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 9 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 10 N -0.93 -59.09 11.19 21.65 0.24 -58.85 16 11 Si 0.96 48.69 29.59 68.60 2.03 50.71 16 12 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 13 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 14 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 15 C 0.18 9.17 4.89 86.36 0.42 9.59 16 16 C 0.14 5.61 2.06 45.07 0.09 5.70 16 17 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 18 N -0.70 -23.25 4.36 -446.12 -1.95 -25.20 16 19 C 0.58 22.47 7.75 86.45 0.67 23.14 16 20 O -0.58 -29.59 16.54 -4.33 -0.07 -29.66 16 21 C -0.08 -2.42 7.06 40.35 0.28 -2.14 16 22 C -0.13 -3.97 10.65 22.57 0.24 -3.73 16 23 C -0.23 -4.68 10.81 22.01 0.24 -4.44 16 24 C 0.05 0.74 11.89 83.48 0.99 1.73 16 25 N -0.52 -9.74 5.99 -183.62 -1.10 -10.84 16 26 H 0.43 5.00 8.19 -92.71 -0.76 4.24 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.19 7.36 -2.39 -0.02 1.18 16 30 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.04 2.62 6.03 -2.39 -0.01 2.61 16 36 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.41 9.58 7.44 -92.71 -0.69 8.89 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -83.01 326.66 2.18 -80.83 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.40 Total: 16.96 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.52 Total: 10.19 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -4.90 Total: -129.04 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.07 Total: -29.66 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.71 kcal Total: -83.01 2.18 -80.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965066536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.561 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds