Wall clock time and date at job start Mon Mar 30 2020 02:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45681 * 2 1 4 4 C 1.53349 * 109.41773 * 240.10120 * 2 1 3 5 5 C 1.53194 * 109.14721 * 178.67307 * 4 2 1 6 6 N 1.46924 * 108.89447 * 54.57940 * 5 4 2 7 7 C 1.36930 * 120.63300 * 126.34039 * 6 5 4 8 8 H 1.07996 * 120.00049 * 331.82927 * 7 6 5 9 9 C 1.38816 * 120.00324 * 151.82723 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.06571 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.06593 * 9 7 6 12 12 H 1.48500 * 109.46960 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47338 * 119.99948 * 11 9 7 14 14 H 1.48503 * 109.47085 * 239.99957 * 11 9 7 15 15 C 1.46929 * 118.73622 * 306.31812 * 6 5 4 16 16 C 1.53032 * 109.46055 * 119.97042 * 2 1 3 17 17 H 1.08996 * 109.50231 * 301.33888 * 16 2 1 18 18 N 1.46508 * 109.52492 * 61.42189 * 16 2 1 19 19 C 1.34777 * 120.00037 * 204.85410 * 18 16 2 20 20 O 1.21695 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.46678 * 119.99643 * 179.97438 * 19 18 16 22 22 C 1.37867 * 126.22782 * 179.68937 * 21 19 18 23 23 C 1.39839 * 107.08334 * 179.85077 * 22 21 19 24 24 C 1.35455 * 107.86500 * 0.41832 * 23 22 21 25 25 N 1.35536 * 108.86747 * 359.74093 * 24 23 22 26 26 H 0.97002 * 125.67522 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47606 * 300.02904 * 1 2 3 28 28 H 1.09006 * 109.47638 * 60.03104 * 1 2 3 29 29 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.68685 * 58.70988 * 4 2 1 31 31 H 1.08997 * 109.47481 * 298.50878 * 4 2 1 32 32 H 1.08999 * 109.58554 * 294.71486 * 5 4 2 33 33 H 1.09001 * 109.58356 * 174.43691 * 5 4 2 34 34 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.58736 * 173.39352 * 15 6 5 36 36 H 1.09002 * 109.58596 * 293.82293 * 15 6 5 37 37 H 0.97002 * 119.99723 * 24.84607 * 18 16 2 38 38 H 1.08000 * 126.46264 * 359.96339 * 22 21 19 39 39 H 1.08005 * 126.06911 * 180.13948 * 23 22 21 40 40 H 1.07991 * 125.56621 * 179.70720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2643 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0045 -2.9700 -0.8249 9 6 5.8615 -2.4163 1.0595 10 7 6.0659 -1.4125 1.8861 11 14 6.7621 -4.0330 1.3127 12 1 6.3594 -4.9948 0.2553 13 1 8.2269 -3.8005 1.2390 14 1 6.4156 -4.5893 2.6452 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6572 -0.2209 2.1398 18 7 1.5802 -2.1118 1.2348 19 6 1.4547 -2.7928 2.3911 20 8 1.7228 -2.2520 3.4478 21 6 0.9940 -4.1852 2.3759 22 6 0.8259 -4.9999 3.4753 23 6 0.3714 -6.2360 3.0050 24 6 0.2809 -6.1594 1.6556 25 7 0.6565 -4.9184 1.2609 26 1 0.6826 -4.5998 0.3450 27 1 -0.3634 0.5143 0.8897 28 1 -0.3634 0.5134 -0.8903 29 1 -0.3633 -1.0277 0.0005 30 1 1.6592 -0.2216 -2.1448 31 1 1.6980 -1.7559 -1.2421 32 1 3.9142 0.3412 -1.3674 33 1 3.9437 -1.2827 -2.0987 34 1 6.6846 -1.5123 2.6264 35 1 3.9416 -1.2847 2.0983 36 1 3.9143 0.3409 1.3673 37 1 1.3660 -2.5427 0.3925 38 1 1.0088 -4.7332 4.5057 39 1 0.1386 -7.0999 3.6099 40 1 -0.0379 -6.9571 1.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965066537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:45 Heat of formation + Delta-G solvation = 26.227427 kcal Electronic energy + Delta-G solvation = -22703.633174 eV Core-core repulsion = 19519.444890 eV Total energy + Delta-G solvation = -3184.188284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01428 -39.22436 -37.31288 -34.16080 -32.88134 -31.09305 -30.82751 -29.73279 -28.46373 -27.26664 -24.14474 -22.97547 -21.88180 -21.11776 -20.46519 -19.82990 -18.74885 -18.62216 -16.71771 -15.60762 -15.17500 -14.97981 -14.50744 -13.96989 -13.87992 -13.70240 -13.51940 -13.42576 -13.19286 -12.83027 -12.66772 -12.41268 -12.13986 -11.93691 -11.61923 -11.41824 -11.12062 -10.92317 -10.73504 -10.54539 -10.22015 -9.95371 -9.73643 -9.55442 -9.44373 -8.84505 -8.46746 -8.44593 -7.99265 -6.65333 -5.76995 -3.20671 1.80260 2.94524 3.27840 3.39055 3.45725 3.48596 3.68533 3.94372 4.50471 5.12428 5.14553 5.19025 5.27895 5.32648 5.41995 5.50944 5.53027 5.64274 5.82505 5.88315 5.95611 6.10155 6.23375 6.25947 6.31601 6.33831 6.40353 6.51256 6.61918 6.70727 6.82948 6.88833 6.95967 7.10278 7.36409 7.51785 7.67763 7.80508 8.08540 8.46544 8.76319 9.21250 9.85384 10.40929 11.30806 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.009067 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.734183 B = 3087.487314 C = 4514.840132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.257 4.257 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.287 1.287 15 C 0.159 3.841 16 C 0.127 3.873 17 H 0.078 0.922 18 N -0.698 5.698 19 C 0.585 3.415 20 O -0.535 6.535 21 C -0.037 4.037 22 C -0.119 4.119 23 C -0.213 4.213 24 C 0.010 3.990 25 N -0.538 5.538 26 H 0.415 0.585 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.026 0.974 37 H 0.388 0.612 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 -3.938 -4.450 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.386 4.386 8 H 0.080 0.920 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.727 3.273 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.214 1.214 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.096 0.904 18 N -0.348 5.348 19 C 0.372 3.628 20 O -0.412 6.412 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.238 4.238 24 C -0.125 4.125 25 N -0.134 5.134 26 H 0.252 0.748 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.222 0.778 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.294 -3.413 -3.700 14.215 hybrid contribution 0.519 -1.005 -0.712 1.337 sum -12.775 -4.419 -4.412 14.219 Atomic orbital electron populations 1.21845 0.96015 1.01192 1.01060 1.21377 0.94553 1.00003 0.95433 0.90274 1.22129 0.99360 0.99105 0.96135 1.20929 0.90622 0.96616 0.90346 1.43969 1.48272 1.39602 0.99083 1.19077 1.09916 1.03020 1.06613 0.91976 1.25019 0.97110 0.97177 0.99795 1.70002 1.37112 1.28876 1.17894 0.86324 0.79237 0.83844 0.77930 1.20456 1.21704 1.21391 1.21220 0.86630 0.97859 0.91019 1.21813 0.98990 0.80126 0.96960 0.90414 1.45708 1.67187 1.14292 1.07575 1.16972 0.77712 0.83663 0.84484 1.90814 1.51101 1.68538 1.30733 1.20702 1.13285 0.94014 0.87099 1.21279 1.02500 0.92825 0.97928 1.20834 1.10195 0.98948 0.93807 1.21924 1.06251 0.87875 0.96496 1.42035 1.51394 1.11351 1.08578 0.74846 0.92975 0.93120 0.93306 0.92694 0.93134 0.96381 0.92894 0.93585 0.88417 0.95593 0.77843 0.83762 0.84301 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 37.16 0.34 -1.47 16 2 C -0.09 -1.45 2.48 -90.42 -0.22 -1.67 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 4 C -0.13 -1.95 5.23 -26.45 -0.14 -2.09 16 5 C 0.14 2.76 6.50 -3.71 -0.02 2.74 16 6 N -0.59 -14.05 2.91 -172.32 -0.50 -14.55 16 7 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16 8 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 9 C 0.01 0.24 4.92 -17.43 -0.09 0.15 16 10 N -0.90 -26.61 11.20 55.49 0.62 -25.99 16 11 Si 0.90 22.40 29.59 -169.99 -5.03 17.37 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.16 3.81 4.90 -3.71 -0.02 3.80 16 16 C 0.13 2.40 2.24 -67.81 -0.15 2.25 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.70 -12.43 4.25 -54.99 -0.23 -12.66 16 19 C 0.59 11.61 7.75 -12.85 -0.10 11.51 16 20 O -0.53 -12.59 16.55 5.19 0.09 -12.50 16 21 C -0.04 -0.64 7.06 -81.98 -0.58 -1.21 16 22 C -0.12 -1.94 10.65 -39.12 -0.42 -2.35 16 23 C -0.21 -2.80 10.81 -39.98 -0.43 -3.23 16 24 C 0.01 0.12 11.89 -16.91 -0.20 -0.08 16 25 N -0.54 -7.01 5.99 -9.39 -0.06 -7.06 16 26 H 0.41 4.35 8.19 -40.82 -0.33 4.01 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.20 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.74 6.41 -51.93 -0.33 0.41 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.39 6.02 5.78 -40.82 -0.24 5.78 16 38 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -32.92 323.58 -8.18 -41.10 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.77 Total: 8.16 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.18 Total: 1.26 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.17 Total: -60.27 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.92 -8.18 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965066537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.328 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds