Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.44743 * 2 1 4 4 C 1.53035 * 109.45775 * 240.03721 * 2 1 3 5 5 C 1.53189 * 109.31413 * 178.61729 * 4 2 1 6 6 N 1.46923 * 108.77631 * 54.62898 * 5 4 2 7 7 C 1.36940 * 120.62803 * 126.41838 * 6 5 4 8 8 H 1.08004 * 119.99892 * 207.67781 * 7 6 5 9 9 C 1.38814 * 120.00265 * 27.67696 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.35595 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.35790 * 9 7 6 12 12 H 1.48500 * 109.47011 * 59.99979 * 11 9 7 13 13 H 1.48495 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47079 * 300.00031 * 11 9 7 15 15 C 1.46931 * 118.74185 * 306.39830 * 6 5 4 16 16 C 1.53040 * 109.45863 * 119.96996 * 2 1 3 17 17 H 1.08997 * 109.49987 * 61.42963 * 16 2 1 18 18 N 1.46497 * 109.52302 * 301.35124 * 16 2 1 19 19 C 1.34779 * 120.00200 * 155.14653 * 18 16 2 20 20 O 1.21693 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.46682 * 120.00081 * 179.97438 * 19 18 16 22 22 C 1.37868 * 126.22957 * 179.97438 * 21 19 18 23 23 C 1.39837 * 107.08328 * 179.97438 * 22 21 19 24 24 C 1.35452 * 107.86434 * 359.97438 * 23 22 21 25 25 N 1.35536 * 108.87144 * 359.76858 * 24 23 22 26 26 H 0.97001 * 125.67415 * 180.25682 * 25 24 23 27 27 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47124 * 299.96889 * 1 2 3 29 29 H 1.08996 * 109.46854 * 59.96240 * 1 2 3 30 30 H 1.09000 * 109.50141 * 58.66489 * 4 2 1 31 31 H 1.09004 * 109.50000 * 298.56272 * 4 2 1 32 32 H 1.09003 * 109.59325 * 174.42197 * 5 4 2 33 33 H 1.09004 * 109.58368 * 294.70276 * 5 4 2 34 34 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.58479 * 173.39649 * 15 6 5 36 36 H 1.08997 * 109.58267 * 293.81882 * 15 6 5 37 37 H 0.97004 * 120.00439 * 335.14664 * 18 16 2 38 38 H 1.08001 * 126.45931 * 0.02562 * 22 21 19 39 39 H 1.08003 * 126.06593 * 179.97438 * 23 22 21 40 40 H 1.08004 * 125.56235 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9764 -2.2734 -0.0002 8 1 5.0095 -2.9658 0.8281 9 6 5.8548 -2.4221 -1.0647 10 7 6.0605 -1.4202 -1.8930 11 14 6.7449 -4.0442 -1.3216 12 1 5.7501 -5.1281 -1.5232 13 1 7.6182 -3.9455 -2.5186 14 1 7.5735 -4.3486 -0.1275 15 6 3.5713 -0.6886 1.2642 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0495 2.4463 19 6 1.4002 -0.7329 3.6012 20 8 1.7146 -1.9074 3.6504 21 6 0.8858 -0.0605 4.7991 22 6 0.7053 -0.6325 6.0404 23 6 0.1992 0.3631 6.8819 24 6 0.0826 1.5008 6.1561 25 7 0.5017 1.2582 4.8902 26 1 0.5250 1.9055 4.1682 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5133 0.8903 29 1 -0.3633 0.5144 -0.8896 30 1 1.6572 -0.2206 -2.1398 31 1 1.6978 -1.7556 -1.2384 32 1 3.9417 -1.2845 -2.0985 33 1 3.9143 0.3407 -1.3699 34 1 6.6746 -1.5239 -2.6366 35 1 3.9417 -1.2846 2.0983 36 1 3.9143 0.3408 1.3673 37 1 1.2753 0.8869 2.4072 38 1 0.9158 -1.6564 6.3120 39 1 -0.0538 0.2457 7.9253 40 1 -0.2816 2.4477 6.5266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965066538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = 24.486838 kcal Electronic energy + Delta-G solvation = -21844.719594 eV Core-core repulsion = 18660.455833 eV Total energy + Delta-G solvation = -3184.263762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30652 -39.33261 -37.49737 -34.51878 -33.08751 -31.20131 -31.06639 -29.81248 -28.49720 -27.23031 -24.16960 -23.24294 -21.68517 -21.10887 -20.47493 -20.09102 -19.71054 -18.46365 -16.79965 -15.81119 -15.56192 -15.08868 -14.67723 -14.06816 -13.97936 -13.76918 -13.68382 -13.45967 -13.28507 -13.08904 -12.74665 -12.47360 -12.37145 -12.02973 -11.66449 -11.52274 -11.04243 -10.77125 -10.69299 -10.28156 -10.18886 -10.03917 -9.87169 -9.66091 -9.54489 -9.12442 -8.86993 -8.42452 -8.28235 -6.67002 -5.77248 -3.19178 1.48066 2.67219 2.97619 3.31622 3.43099 3.47256 3.50971 3.54508 4.53703 4.88669 4.90237 5.09488 5.24598 5.24980 5.36049 5.37085 5.45883 5.59785 5.85458 5.92024 5.97237 6.03288 6.07793 6.14500 6.20071 6.25605 6.50975 6.58246 6.62377 6.64805 6.72073 6.80330 6.83826 6.99233 7.22805 7.34859 7.64435 7.70732 7.84731 8.38055 8.47797 9.23439 9.85569 10.41008 11.31582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.004492 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.565156 B = 6231.681934 C = 6985.043456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.142 3.858 16 C 0.133 3.867 17 H 0.089 0.911 18 N -0.721 5.721 19 C 0.583 3.417 20 O -0.523 6.523 21 C -0.047 4.047 22 C -0.113 4.113 23 C -0.213 4.213 24 C 0.014 3.986 25 N -0.541 5.541 26 H 0.415 0.585 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.018 0.982 34 H 0.254 0.746 35 H 0.059 0.941 36 H 0.016 0.984 37 H 0.387 0.613 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 9.047 10.198 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.195 4.195 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.014 3.986 16 C 0.028 3.972 17 H 0.107 0.893 18 N -0.371 5.371 19 C 0.369 3.631 20 O -0.399 6.399 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.237 4.237 24 C -0.121 4.121 25 N -0.137 5.137 26 H 0.252 0.748 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.219 0.781 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.643 8.241 9.909 18.768 hybrid contribution 0.337 0.166 -0.450 0.586 sum -13.306 8.408 9.459 18.363 Atomic orbital electron populations 1.21852 0.96029 1.01679 1.00546 1.21312 0.94508 0.99606 0.95590 0.91591 1.22249 1.00715 0.99602 0.94744 1.20842 0.87275 0.97311 0.90426 1.43985 1.48088 1.39795 0.99062 1.19200 1.09762 1.02875 1.06270 0.91541 1.25010 0.97182 0.97519 0.99811 1.70026 1.37811 1.29079 1.18020 0.86346 0.79237 0.83799 0.77300 1.20943 1.21657 1.20815 1.21191 0.90006 0.96615 0.90799 1.21803 0.96781 0.97026 0.81560 0.89326 1.46028 1.66515 1.13724 1.10803 1.17070 0.78089 0.86323 0.81590 1.90876 1.49819 1.15192 1.83985 1.20665 1.13482 0.84667 0.97222 1.21342 1.01685 1.00013 0.90873 1.20893 1.09493 0.93057 1.00273 1.21989 1.05251 1.00660 0.84221 1.42048 1.50280 1.09954 1.11410 0.74811 0.92791 0.93690 0.92917 0.92697 0.92329 0.89194 0.96381 0.93622 0.92237 0.96627 0.78068 0.83539 0.84077 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.46 5.36 -26.62 -0.14 -2.60 16 5 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 6 N -0.59 -14.96 3.00 -172.32 -0.52 -15.48 16 7 C -0.25 -7.13 9.59 -15.06 -0.14 -7.27 16 8 H 0.07 1.90 7.89 -52.48 -0.41 1.49 16 9 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 10 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 11 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.14 3.11 6.09 -3.71 -0.02 3.09 16 16 C 0.13 2.39 2.06 -67.81 -0.14 2.25 16 17 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 18 N -0.72 -10.37 4.37 -55.00 -0.24 -10.61 16 19 C 0.58 9.46 7.75 -12.85 -0.10 9.36 16 20 O -0.52 -10.83 16.55 5.20 0.09 -10.74 16 21 C -0.05 -0.62 7.06 -81.98 -0.58 -1.20 16 22 C -0.11 -1.45 10.65 -39.12 -0.42 -1.87 16 23 C -0.21 -2.12 10.81 -39.98 -0.43 -2.55 16 24 C 0.01 0.12 11.89 -16.91 -0.20 -0.08 16 25 N -0.54 -4.93 5.99 -9.39 -0.06 -4.99 16 26 H 0.41 2.56 8.19 -40.82 -0.33 2.22 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.50 7.35 -51.93 -0.38 0.12 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 1.42 7.93 -51.93 -0.41 1.01 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.39 4.19 7.43 -40.82 -0.30 3.89 16 38 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -33.27 326.66 -8.28 -41.55 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.92 Total: 4.01 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.15 Total: -0.11 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.19 Total: -56.81 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.27 -8.28 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965066538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.039 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds