Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.44743 * 2 1 4 4 C 1.53035 * 109.45775 * 240.03721 * 2 1 3 5 5 C 1.53189 * 109.31413 * 178.61729 * 4 2 1 6 6 N 1.46923 * 108.77631 * 54.62898 * 5 4 2 7 7 C 1.36940 * 120.62803 * 126.41838 * 6 5 4 8 8 H 1.08004 * 119.99892 * 207.67781 * 7 6 5 9 9 C 1.38814 * 120.00265 * 27.67696 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.35595 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.35790 * 9 7 6 12 12 H 1.48500 * 109.47011 * 59.99979 * 11 9 7 13 13 H 1.48495 * 109.47124 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47079 * 300.00031 * 11 9 7 15 15 C 1.46931 * 118.74185 * 306.39830 * 6 5 4 16 16 C 1.53040 * 109.45863 * 119.96996 * 2 1 3 17 17 H 1.08997 * 109.49987 * 61.42963 * 16 2 1 18 18 N 1.46497 * 109.52302 * 301.35124 * 16 2 1 19 19 C 1.34779 * 120.00200 * 155.14653 * 18 16 2 20 20 O 1.21693 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.46682 * 120.00081 * 179.97438 * 19 18 16 22 22 C 1.37868 * 126.22957 * 179.97438 * 21 19 18 23 23 C 1.39837 * 107.08328 * 179.97438 * 22 21 19 24 24 C 1.35452 * 107.86434 * 359.97438 * 23 22 21 25 25 N 1.35536 * 108.87144 * 359.76858 * 24 23 22 26 26 H 0.97001 * 125.67415 * 180.25682 * 25 24 23 27 27 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47124 * 299.96889 * 1 2 3 29 29 H 1.08996 * 109.46854 * 59.96240 * 1 2 3 30 30 H 1.09000 * 109.50141 * 58.66489 * 4 2 1 31 31 H 1.09004 * 109.50000 * 298.56272 * 4 2 1 32 32 H 1.09003 * 109.59325 * 174.42197 * 5 4 2 33 33 H 1.09004 * 109.58368 * 294.70276 * 5 4 2 34 34 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.58479 * 173.39649 * 15 6 5 36 36 H 1.08997 * 109.58267 * 293.81882 * 15 6 5 37 37 H 0.97004 * 120.00439 * 335.14664 * 18 16 2 38 38 H 1.08001 * 126.45931 * 0.02562 * 22 21 19 39 39 H 1.08003 * 126.06593 * 179.97438 * 23 22 21 40 40 H 1.08004 * 125.56235 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 -0.0001 7 6 4.9764 -2.2734 -0.0002 8 1 5.0095 -2.9658 0.8281 9 6 5.8548 -2.4221 -1.0647 10 7 6.0605 -1.4202 -1.8930 11 14 6.7449 -4.0442 -1.3216 12 1 5.7501 -5.1281 -1.5232 13 1 7.6182 -3.9455 -2.5186 14 1 7.5735 -4.3486 -0.1275 15 6 3.5713 -0.6886 1.2642 16 6 2.0399 -0.7208 1.2500 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0495 2.4463 19 6 1.4002 -0.7329 3.6012 20 8 1.7146 -1.9074 3.6504 21 6 0.8858 -0.0605 4.7991 22 6 0.7053 -0.6325 6.0404 23 6 0.1992 0.3631 6.8819 24 6 0.0826 1.5008 6.1561 25 7 0.5017 1.2582 4.8902 26 1 0.5250 1.9055 4.1682 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5133 0.8903 29 1 -0.3633 0.5144 -0.8896 30 1 1.6572 -0.2206 -2.1398 31 1 1.6978 -1.7556 -1.2384 32 1 3.9417 -1.2845 -2.0985 33 1 3.9143 0.3407 -1.3699 34 1 6.6746 -1.5239 -2.6366 35 1 3.9417 -1.2846 2.0983 36 1 3.9143 0.3408 1.3673 37 1 1.2753 0.8869 2.4072 38 1 0.9158 -1.6564 6.3120 39 1 -0.0538 0.2457 7.9253 40 1 -0.2816 2.4477 6.5266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965066538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = 1.408863 kcal Electronic energy + Delta-G solvation = -21845.720330 eV Core-core repulsion = 18660.455833 eV Total energy + Delta-G solvation = -3185.264498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.20758 -40.66917 -39.03046 -36.24509 -34.58288 -33.06655 -32.01988 -31.11412 -29.75018 -28.83974 -25.97340 -24.63593 -23.00328 -22.70069 -21.38321 -21.36230 -20.91270 -19.66793 -18.75728 -17.22071 -16.87697 -16.54351 -16.30153 -15.58604 -15.37798 -15.23366 -15.00770 -14.72751 -14.53612 -14.37172 -14.20583 -13.66920 -13.48000 -13.23929 -13.18389 -13.12579 -12.75700 -12.68505 -12.35022 -12.06657 -11.97817 -11.71876 -11.52858 -11.30511 -11.08643 -10.62568 -10.22850 -9.93377 -9.17129 -8.72205 -7.93151 -5.38506 0.48591 1.43187 1.45412 1.52967 1.87473 2.02283 2.27281 2.38848 2.49496 3.21038 3.66191 3.70011 3.93930 3.98215 4.07598 4.36434 4.40672 4.43971 4.47347 4.56178 4.62161 4.72585 4.88848 4.91552 4.99950 5.05513 5.13176 5.13278 5.18727 5.30662 5.39358 5.42908 5.51674 5.60127 5.74203 5.77412 5.94190 6.34052 6.49113 6.65422 7.10130 7.17824 7.79422 8.29272 9.12456 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.004492 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.565156 B = 6231.681934 C = 6985.043456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.172 3.828 6 N -0.606 5.606 7 C -0.273 4.273 8 H 0.051 0.949 9 C -0.040 4.040 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.144 3.856 16 C 0.151 3.849 17 H 0.056 0.944 18 N -0.703 5.703 19 C 0.581 3.419 20 O -0.582 6.582 21 C -0.080 4.080 22 C -0.130 4.130 23 C -0.230 4.230 24 C 0.049 3.951 25 N -0.526 5.526 26 H 0.431 0.569 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.006 0.994 34 H 0.253 0.747 35 H 0.027 0.973 36 H 0.021 0.979 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.255 11.616 10.970 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.330 5.330 7 C -0.403 4.403 8 H 0.069 0.931 9 C -0.237 4.237 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.205 1.205 15 C 0.017 3.983 16 C 0.044 3.956 17 H 0.074 0.926 18 N -0.354 5.354 19 C 0.371 3.629 20 O -0.461 6.461 21 C -0.193 4.193 22 C -0.157 4.157 23 C -0.253 4.253 24 C -0.088 4.088 25 N -0.123 5.123 26 H 0.271 0.729 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.245 0.755 38 H 0.147 0.853 39 H 0.180 0.820 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.883 10.876 10.672 22.010 hybrid contribution 1.024 -0.562 -0.563 1.297 sum -14.859 10.314 10.109 20.721 Atomic orbital electron populations 1.21773 0.92849 1.01721 1.02857 1.21239 0.96966 0.99399 0.92496 0.89877 1.22086 0.96680 0.99832 0.97660 1.20721 0.90675 0.95473 0.88449 1.44202 1.48244 1.39747 1.00793 1.19365 1.10779 1.03817 1.06307 0.93088 1.25694 0.97986 1.00485 0.99487 1.70150 1.38331 1.30566 1.18261 0.85388 0.78117 0.80018 0.77222 1.20568 1.21022 1.20486 1.21214 0.92917 0.95720 0.88441 1.21281 0.93688 0.96393 0.84207 0.92579 1.45698 1.65774 1.14589 1.09362 1.17531 0.77069 0.85766 0.82565 1.90841 1.52481 1.17864 1.84955 1.20095 1.16584 0.86717 0.95870 1.21518 1.02087 1.00285 0.91846 1.21211 1.09912 0.92845 1.01336 1.22774 1.01468 1.01637 0.82880 1.42011 1.49199 1.08535 1.12550 0.72899 0.93937 0.91396 0.90598 0.89640 0.93638 0.92628 0.97588 0.93767 0.95408 0.96095 0.75458 0.85257 0.82001 0.76511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.02 71.98 0.65 -2.34 16 2 C -0.08 -2.43 2.27 -10.77 -0.02 -2.46 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -4.45 5.36 30.67 0.16 -4.29 16 5 C 0.17 8.28 5.31 86.36 0.46 8.74 16 6 N -0.61 -32.23 3.00 -699.09 -2.09 -34.33 16 7 C -0.27 -16.17 9.59 84.03 0.81 -15.37 16 8 H 0.05 3.10 7.89 -2.91 -0.02 3.08 16 9 C -0.04 -2.35 4.91 84.86 0.42 -1.93 16 10 N -0.93 -55.50 11.19 21.65 0.24 -55.26 16 11 Si 0.97 46.85 29.59 68.60 2.03 48.88 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 15 C 0.14 6.59 6.09 86.36 0.53 7.12 16 16 C 0.15 5.45 2.06 45.07 0.09 5.54 16 17 H 0.06 2.43 7.58 -2.39 -0.02 2.42 16 18 N -0.70 -19.74 4.37 -446.14 -1.95 -21.69 16 19 C 0.58 19.25 7.75 86.45 0.67 19.92 16 20 O -0.58 -25.65 16.55 -4.32 -0.07 -25.72 16 21 C -0.08 -2.03 7.06 40.35 0.28 -1.75 16 22 C -0.13 -3.31 10.65 22.57 0.24 -3.07 16 23 C -0.23 -3.94 10.81 22.01 0.24 -3.70 16 24 C 0.05 0.58 11.89 83.48 0.99 1.57 16 25 N -0.53 -7.77 5.99 -183.62 -1.10 -8.87 16 26 H 0.43 3.45 8.19 -92.71 -0.76 2.69 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 3.04 6.04 -2.39 -0.01 3.03 16 33 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.03 1.41 7.93 -2.39 -0.02 1.39 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.41 7.78 7.43 -92.71 -0.69 7.09 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -78.34 326.66 2.18 -76.17 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.40 Total: 12.82 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.51 Total: 8.00 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.90 Total: -120.14 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.07 Total: -25.72 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -78.34 2.18 -76.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965066538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.577 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds