Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44739 * 2 1 4 4 C 1.53040 * 109.46435 * 119.97096 * 2 1 3 5 5 C 1.53190 * 109.31342 * 181.38510 * 4 2 1 6 6 N 1.46927 * 108.77495 * 305.36740 * 5 4 2 7 7 C 1.36934 * 120.62686 * 233.61127 * 6 5 4 8 8 H 1.08001 * 120.00453 * 27.67549 * 7 6 5 9 9 C 1.38819 * 120.00113 * 207.67206 * 7 6 5 10 10 N 1.31621 * 119.99419 * 17.36949 * 9 7 6 11 11 Si 1.86794 * 120.00418 * 197.36974 * 9 7 6 12 12 H 1.48498 * 109.47206 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47214 * 120.00030 * 11 9 7 14 14 H 1.48502 * 109.47327 * 240.00210 * 11 9 7 15 15 C 1.46927 * 118.74117 * 53.60632 * 6 5 4 16 16 C 1.53045 * 109.45692 * 240.03974 * 2 1 3 17 17 H 1.09002 * 109.49853 * 58.66245 * 16 2 1 18 18 N 1.46502 * 109.52382 * 298.57921 * 16 2 1 19 19 C 1.34771 * 119.99768 * 155.14556 * 18 16 2 20 20 O 1.21629 * 120.00231 * 0.02562 * 19 18 16 21 21 C 1.47261 * 119.99893 * 180.02562 * 19 18 16 22 22 C 1.46689 * 126.94195 * 359.68392 * 21 19 18 23 23 C 1.34489 * 106.33280 * 179.88989 * 22 21 19 24 24 N 1.36442 * 108.85629 * 0.37824 * 23 22 21 25 25 H 0.96998 * 124.85059 * 179.72504 * 24 23 22 26 26 C 1.34655 * 110.29863 * 359.74813 * 24 23 22 27 27 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47220 * 299.95737 * 1 2 3 29 29 H 1.08994 * 109.47670 * 59.96053 * 1 2 3 30 30 H 1.08998 * 109.49289 * 301.33726 * 4 2 1 31 31 H 1.08996 * 109.49549 * 61.43168 * 4 2 1 32 32 H 1.09003 * 109.58373 * 65.15018 * 5 4 2 33 33 H 1.08999 * 109.58380 * 185.43516 * 5 4 2 34 34 H 0.97006 * 119.99875 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.58682 * 186.60939 * 15 6 5 36 36 H 1.08995 * 109.58414 * 66.18296 * 15 6 5 37 37 H 0.96999 * 119.99681 * 335.14880 * 18 16 2 38 38 H 1.08005 * 126.83263 * 0.02562 * 22 21 19 39 39 H 1.08003 * 125.57178 * 180.08602 * 23 22 21 40 40 H 1.07998 * 125.80507 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2641 6 7 4.0679 -1.2487 -0.0003 7 6 4.9760 -2.2736 -0.0004 8 1 5.0091 -2.9659 0.8278 9 6 5.8542 -2.4227 -1.0651 10 7 6.0603 -1.4207 -1.8934 11 14 6.7435 -4.0451 -1.3223 12 1 6.3417 -5.0034 -0.2614 13 1 6.3861 -4.6000 -2.6525 14 1 8.2101 -3.8216 -1.2570 15 6 3.5713 -0.6884 -1.2645 16 6 2.0398 -0.7207 -1.2502 17 1 1.6571 -0.2205 -2.1399 18 7 1.5800 -2.1116 -1.2353 19 6 1.4545 -2.7923 -2.3917 20 8 1.7234 -2.2519 -3.4477 21 6 0.9919 -4.1902 -2.3767 22 6 0.6345 -4.9880 -1.1988 23 6 0.2691 -6.1981 -1.6582 24 7 0.3825 -6.2062 -3.0178 25 1 0.1810 -6.9659 -3.5863 26 6 0.8144 -5.0090 -3.4578 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5132 0.8904 29 1 -0.3634 0.5144 -0.8896 30 1 1.6573 -0.2208 2.1397 31 1 1.6979 -1.7557 1.2381 32 1 3.9143 0.3409 1.3672 33 1 3.9417 -1.2826 2.0997 34 1 6.6742 -1.5247 -2.6372 35 1 3.9415 -1.2843 -2.0987 36 1 3.9142 0.3411 -1.3675 37 1 1.3660 -2.5426 -0.3930 38 1 0.6578 -4.6668 -0.1678 39 1 -0.0559 -7.0292 -1.0498 40 1 0.9903 -4.7408 -4.4890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966195370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = 27.215993 kcal Electronic energy + Delta-G solvation = -22633.962658 eV Core-core repulsion = 19449.817242 eV Total energy + Delta-G solvation = -3184.145417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85865 -39.09430 -37.13067 -33.99360 -32.61438 -31.03380 -30.73946 -29.10464 -28.67001 -27.18108 -24.05137 -22.98474 -21.70084 -20.98099 -20.49569 -19.24080 -18.58264 -18.45055 -16.57238 -15.75831 -14.96647 -14.78840 -14.33246 -13.80477 -13.78861 -13.66579 -13.47242 -13.35587 -13.12832 -12.84801 -12.68369 -12.44206 -11.84665 -11.81602 -11.47327 -11.25882 -10.95798 -10.82265 -10.65349 -10.39893 -10.11494 -9.82047 -9.57237 -9.38549 -9.13869 -8.65710 -8.35375 -8.25209 -8.01561 -6.53694 -5.66510 -3.08503 2.16209 2.63131 3.31565 3.44774 3.52024 3.53599 4.09844 4.28957 4.59503 5.07789 5.28423 5.30490 5.35633 5.45267 5.50955 5.54847 5.67079 5.69419 5.99280 6.02665 6.04277 6.11177 6.24615 6.27203 6.41760 6.48410 6.55270 6.67577 6.80161 6.85204 6.90220 6.99237 7.07176 7.18682 7.54921 7.57480 7.80738 7.92178 8.42577 8.57497 9.12907 9.32210 9.96902 10.52411 11.41280 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.008969 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.501318 B = 3120.974421 C = 4557.266924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.143 3.857 6 N -0.586 5.586 7 C -0.249 4.249 8 H 0.063 0.937 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.292 1.292 15 C 0.160 3.840 16 C 0.127 3.873 17 H 0.074 0.926 18 N -0.692 5.692 19 C 0.587 3.413 20 O -0.562 6.562 21 C -0.218 4.218 22 C -0.166 4.166 23 C -0.026 4.026 24 N -0.558 5.558 25 H 0.414 0.586 26 C 0.063 3.937 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.252 0.748 35 H 0.097 0.903 36 H 0.023 0.977 37 H 0.394 0.606 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -5.885 2.163 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.727 3.273 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.219 1.219 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.092 0.908 18 N -0.342 5.342 19 C 0.375 3.625 20 O -0.442 6.442 21 C -0.228 4.228 22 C -0.190 4.190 23 C -0.153 4.153 24 N -0.153 5.153 25 H 0.250 0.750 26 C -0.072 4.072 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.229 0.771 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.923 -5.585 1.256 15.054 hybrid contribution 0.429 -1.432 0.019 1.495 sum -13.494 -7.017 1.275 15.263 Atomic orbital electron populations 1.21842 0.96066 1.01414 1.00773 1.21309 0.94557 0.99792 0.95643 0.90604 1.22076 0.99216 0.99452 0.96047 1.20917 0.90745 0.96441 0.90281 1.43964 1.48196 1.39562 0.99156 1.19103 1.09743 1.02975 1.06041 0.91937 1.24976 0.97295 0.97120 0.99901 1.70018 1.37517 1.28893 1.17754 0.86317 0.79023 0.84212 0.77789 1.20384 1.21678 1.21913 1.21211 0.86920 0.97581 0.90951 1.21731 0.98707 0.80832 0.96627 0.90809 1.45567 1.66842 1.13611 1.08153 1.17250 0.76894 0.84456 0.83910 1.90732 1.52307 1.70094 1.31098 1.20570 1.13386 0.95473 0.93373 1.22065 1.05459 0.93532 0.97960 1.21687 1.10219 1.00212 0.83202 1.41566 1.53453 1.12707 1.07576 0.75030 1.21792 1.01222 0.84737 0.99461 0.92951 0.93315 0.93171 0.92924 0.92699 0.96547 0.92922 0.93778 0.88441 0.95916 0.77131 0.83974 0.81768 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.05 37.16 0.34 -1.62 16 2 C -0.09 -1.54 2.48 -90.58 -0.22 -1.77 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.13 -2.11 5.20 -26.61 -0.14 -2.25 16 5 C 0.14 2.92 6.51 -3.71 -0.02 2.90 16 6 N -0.59 -14.61 2.91 -172.32 -0.50 -15.11 16 7 C -0.25 -6.92 9.59 -15.06 -0.14 -7.06 16 8 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 9 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 10 N -0.90 -27.24 11.19 55.49 0.62 -26.62 16 11 Si 0.90 22.79 29.59 -169.99 -5.03 17.77 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 C 0.16 3.99 4.91 -3.71 -0.02 3.97 16 16 C 0.13 2.55 2.24 -67.81 -0.15 2.40 16 17 H 0.07 1.54 7.58 -51.93 -0.39 1.15 16 18 N -0.69 -13.34 4.25 -54.81 -0.23 -13.57 16 19 C 0.59 12.22 7.77 -12.60 -0.10 12.12 16 20 O -0.56 -13.60 16.58 5.25 0.09 -13.51 16 21 C -0.22 -3.78 6.29 -103.35 -0.65 -4.43 16 22 C -0.17 -2.37 10.56 -37.50 -0.40 -2.76 16 23 C -0.03 -0.29 11.89 -16.83 -0.20 -0.49 16 24 N -0.56 -6.00 5.90 -12.85 -0.08 -6.07 16 25 H 0.41 2.80 8.96 -40.82 -0.37 2.44 16 26 C 0.06 0.92 11.69 -16.84 -0.20 0.72 16 27 H 0.05 0.71 7.54 -51.93 -0.39 0.31 16 28 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.89 6.41 -51.93 -0.33 0.56 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.10 2.87 6.04 -51.93 -0.31 2.56 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.39 6.91 5.76 -40.82 -0.24 6.67 16 38 H 0.14 1.83 7.70 -52.48 -0.40 1.43 16 39 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -34.47 323.91 -8.02 -42.49 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.78 Total: 7.93 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.99 Total: 1.81 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.19 Total: -61.37 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.47 -8.02 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966195370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.710 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds