Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44739 * 2 1 4 4 C 1.53040 * 109.46435 * 119.97096 * 2 1 3 5 5 C 1.53190 * 109.31342 * 181.38510 * 4 2 1 6 6 N 1.46927 * 108.77495 * 305.36740 * 5 4 2 7 7 C 1.36934 * 120.62686 * 233.61127 * 6 5 4 8 8 H 1.08001 * 120.00453 * 27.67549 * 7 6 5 9 9 C 1.38819 * 120.00113 * 207.67206 * 7 6 5 10 10 N 1.31621 * 119.99419 * 17.36949 * 9 7 6 11 11 Si 1.86794 * 120.00418 * 197.36974 * 9 7 6 12 12 H 1.48498 * 109.47206 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47214 * 120.00030 * 11 9 7 14 14 H 1.48502 * 109.47327 * 240.00210 * 11 9 7 15 15 C 1.46927 * 118.74117 * 53.60632 * 6 5 4 16 16 C 1.53045 * 109.45692 * 240.03974 * 2 1 3 17 17 H 1.09002 * 109.49853 * 58.66245 * 16 2 1 18 18 N 1.46502 * 109.52382 * 298.57921 * 16 2 1 19 19 C 1.34771 * 119.99768 * 155.14556 * 18 16 2 20 20 O 1.21629 * 120.00231 * 0.02562 * 19 18 16 21 21 C 1.47261 * 119.99893 * 180.02562 * 19 18 16 22 22 C 1.46689 * 126.94195 * 359.68392 * 21 19 18 23 23 C 1.34489 * 106.33280 * 179.88989 * 22 21 19 24 24 N 1.36442 * 108.85629 * 0.37824 * 23 22 21 25 25 H 0.96998 * 124.85059 * 179.72504 * 24 23 22 26 26 C 1.34655 * 110.29863 * 359.74813 * 24 23 22 27 27 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47220 * 299.95737 * 1 2 3 29 29 H 1.08994 * 109.47670 * 59.96053 * 1 2 3 30 30 H 1.08998 * 109.49289 * 301.33726 * 4 2 1 31 31 H 1.08996 * 109.49549 * 61.43168 * 4 2 1 32 32 H 1.09003 * 109.58373 * 65.15018 * 5 4 2 33 33 H 1.08999 * 109.58380 * 185.43516 * 5 4 2 34 34 H 0.97006 * 119.99875 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.58682 * 186.60939 * 15 6 5 36 36 H 1.08995 * 109.58414 * 66.18296 * 15 6 5 37 37 H 0.96999 * 119.99681 * 335.14880 * 18 16 2 38 38 H 1.08005 * 126.83263 * 0.02562 * 22 21 19 39 39 H 1.08003 * 125.57178 * 180.08602 * 23 22 21 40 40 H 1.07998 * 125.80507 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2641 6 7 4.0679 -1.2487 -0.0003 7 6 4.9760 -2.2736 -0.0004 8 1 5.0091 -2.9659 0.8278 9 6 5.8542 -2.4227 -1.0651 10 7 6.0603 -1.4207 -1.8934 11 14 6.7435 -4.0451 -1.3223 12 1 6.3417 -5.0034 -0.2614 13 1 6.3861 -4.6000 -2.6525 14 1 8.2101 -3.8216 -1.2570 15 6 3.5713 -0.6884 -1.2645 16 6 2.0398 -0.7207 -1.2502 17 1 1.6571 -0.2205 -2.1399 18 7 1.5800 -2.1116 -1.2353 19 6 1.4545 -2.7923 -2.3917 20 8 1.7234 -2.2519 -3.4477 21 6 0.9919 -4.1902 -2.3767 22 6 0.6345 -4.9880 -1.1988 23 6 0.2691 -6.1981 -1.6582 24 7 0.3825 -6.2062 -3.0178 25 1 0.1810 -6.9659 -3.5863 26 6 0.8144 -5.0090 -3.4578 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5132 0.8904 29 1 -0.3634 0.5144 -0.8896 30 1 1.6573 -0.2208 2.1397 31 1 1.6979 -1.7557 1.2381 32 1 3.9143 0.3409 1.3672 33 1 3.9417 -1.2826 2.0997 34 1 6.6742 -1.5247 -2.6372 35 1 3.9415 -1.2843 -2.0987 36 1 3.9142 0.3411 -1.3675 37 1 1.3660 -2.5426 -0.3930 38 1 0.6578 -4.6668 -0.1678 39 1 -0.0559 -7.0292 -1.0498 40 1 0.9903 -4.7408 -4.4890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966195370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = 3.261344 kcal Electronic energy + Delta-G solvation = -22635.001410 eV Core-core repulsion = 19449.817242 eV Total energy + Delta-G solvation = -3185.184168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94251 -40.65654 -38.77976 -35.86736 -34.23703 -32.82705 -32.03942 -30.53671 -29.89481 -28.86787 -25.88987 -24.51387 -23.23007 -22.68915 -21.49843 -20.58128 -20.16086 -19.62502 -18.55745 -17.18340 -16.77401 -16.52391 -15.84842 -15.64230 -15.21565 -14.97196 -14.80202 -14.72448 -14.54552 -14.29347 -14.05674 -13.83468 -13.52352 -13.13201 -12.96788 -12.95471 -12.72512 -12.59664 -12.44708 -12.17756 -11.90607 -11.53131 -11.26163 -11.03482 -10.80562 -10.51553 -9.94390 -9.60880 -9.22395 -8.61154 -7.83417 -5.27635 0.89586 1.39280 1.42761 1.51476 1.62707 2.31036 2.50204 2.69145 2.83289 3.32356 3.71902 3.91145 4.03142 4.12565 4.17025 4.27334 4.43092 4.55995 4.59515 4.70466 4.75589 4.85809 4.95044 4.98245 5.04174 5.13268 5.18772 5.21134 5.27516 5.31663 5.50031 5.56273 5.63400 5.75262 5.81288 5.86152 6.01689 6.41927 6.72786 6.91265 7.16906 7.57380 7.90838 8.41643 9.21493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.008969 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.501318 B = 3120.974421 C = 4557.266924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.245 4.245 8 H 0.070 0.930 9 C -0.054 4.054 10 N -0.935 5.935 11 Si 0.955 3.045 12 H -0.259 1.259 13 H -0.304 1.304 14 H -0.291 1.291 15 C 0.171 3.829 16 C 0.137 3.863 17 H 0.058 0.942 18 N -0.683 5.683 19 C 0.576 3.424 20 O -0.612 6.612 21 C -0.265 4.265 22 C -0.190 4.190 23 C 0.000 4.000 24 N -0.536 5.536 25 H 0.436 0.564 26 C 0.063 3.937 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.013 0.987 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.046 0.954 36 H -0.005 1.005 37 H 0.404 0.596 38 H 0.152 0.848 39 H 0.211 0.789 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 -8.120 4.491 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.322 5.322 7 C -0.376 4.376 8 H 0.088 0.912 9 C -0.249 4.249 10 N -0.582 5.582 11 Si 0.785 3.215 12 H -0.183 1.183 13 H -0.232 1.232 14 H -0.219 1.219 15 C 0.044 3.956 16 C 0.030 3.970 17 H 0.076 0.924 18 N -0.332 5.332 19 C 0.366 3.634 20 O -0.496 6.496 21 C -0.275 4.275 22 C -0.214 4.214 23 C -0.128 4.128 24 N -0.132 5.132 25 H 0.276 0.724 26 C -0.075 4.075 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.013 0.987 37 H 0.241 0.759 38 H 0.169 0.831 39 H 0.228 0.772 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.335 -7.862 3.649 18.492 hybrid contribution 1.151 -0.751 -0.686 1.537 sum -15.184 -8.613 2.962 17.706 Atomic orbital electron populations 1.21747 0.93091 1.02084 1.02172 1.21271 0.96877 0.99062 0.93439 0.90607 1.21953 0.95604 1.00411 0.97420 1.21154 0.93743 0.95916 0.88150 1.44151 1.48010 1.39439 1.00598 1.19464 1.09040 1.03449 1.05613 0.91215 1.25725 0.98958 0.99908 1.00352 1.70194 1.38753 1.30829 1.18390 0.85364 0.77820 0.81083 0.77255 1.18287 1.23151 1.21862 1.20874 0.90246 0.94798 0.89689 1.21437 0.95094 0.82065 0.98399 0.92388 1.45448 1.66188 1.13136 1.08424 1.17949 0.76082 0.85975 0.83399 1.90686 1.54671 1.71547 1.32738 1.20541 1.16516 0.94318 0.96131 1.22259 1.07093 0.94375 0.97673 1.22338 1.07074 1.00156 0.83222 1.41580 1.51472 1.12120 1.08050 0.72395 1.21860 1.00704 0.85759 0.99195 0.92637 0.90376 0.93354 0.88935 0.92055 0.96881 0.92333 0.94751 0.93516 0.98689 0.75923 0.83059 0.77211 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.05 71.98 0.65 -2.60 16 2 C -0.09 -2.74 2.48 -10.77 -0.03 -2.76 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.12 -3.43 5.20 30.67 0.16 -3.27 16 5 C 0.14 5.39 6.51 86.36 0.56 5.95 16 6 N -0.60 -30.35 2.91 -699.10 -2.04 -32.38 16 7 C -0.25 -13.78 9.59 84.04 0.81 -12.98 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 C -0.05 -3.23 4.91 84.86 0.42 -2.81 16 10 N -0.93 -59.72 11.19 21.65 0.24 -59.47 16 11 Si 0.96 47.98 29.59 68.60 2.03 50.01 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 14 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 15 C 0.17 8.98 4.91 86.36 0.42 9.41 16 16 C 0.14 5.65 2.24 45.07 0.10 5.75 16 17 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.68 -26.67 4.25 -445.58 -1.89 -28.56 16 19 C 0.58 24.84 7.77 86.62 0.67 25.52 16 20 O -0.61 -31.56 16.58 -4.12 -0.07 -31.63 16 21 C -0.26 -9.14 6.29 -19.04 -0.12 -9.26 16 22 C -0.19 -5.00 10.56 23.62 0.25 -4.75 16 23 C 0.00 0.01 11.89 83.12 0.99 0.99 16 24 N -0.54 -9.81 5.90 -194.56 -1.15 -10.96 16 25 H 0.44 4.21 8.96 -92.71 -0.83 3.38 16 26 C 0.06 1.76 11.69 83.92 0.98 2.74 16 27 H 0.05 1.33 7.54 -2.39 -0.02 1.31 16 28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.78 6.41 -2.39 -0.02 1.77 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 2.24 7.94 -2.39 -0.02 2.22 16 34 H 0.24 15.28 8.31 -92.70 -0.77 14.51 16 35 H 0.05 2.94 6.04 -2.39 -0.01 2.93 16 36 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.40 13.82 5.76 -92.71 -0.53 13.29 16 38 H 0.15 3.53 7.70 -2.91 -0.02 3.51 16 39 H 0.21 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -80.73 323.91 2.68 -78.05 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.31 Total: 23.02 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.87 Total: 11.93 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -4.84 Total: -131.37 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.07 Total: -31.63 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.73 2.68 -78.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966195370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.312 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds