Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45775 * 2 1 4 4 C 1.53043 * 109.46044 * 119.95435 * 2 1 3 5 5 C 1.53186 * 109.31229 * 181.38696 * 4 2 1 6 6 N 1.46928 * 108.77817 * 305.36928 * 5 4 2 7 7 C 1.36940 * 120.63231 * 233.59249 * 6 5 4 8 8 H 1.08006 * 119.99922 * 27.66723 * 7 6 5 9 9 C 1.38810 * 119.99982 * 207.68071 * 7 6 5 10 10 N 1.31620 * 120.00191 * 17.36859 * 9 7 6 11 11 Si 1.86798 * 119.99876 * 197.37546 * 9 7 6 12 12 H 1.48501 * 109.47223 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47303 * 119.99639 * 11 9 7 14 14 H 1.48507 * 109.47127 * 239.99669 * 11 9 7 15 15 C 1.46923 * 118.73903 * 53.60479 * 6 5 4 16 16 C 1.53031 * 109.46005 * 240.02569 * 2 1 3 17 17 H 1.08994 * 109.50245 * 298.59833 * 16 2 1 18 18 N 1.46504 * 109.50022 * 58.66213 * 16 2 1 19 19 C 1.34770 * 120.00431 * 204.99687 * 18 16 2 20 20 O 1.21628 * 119.99845 * 0.02562 * 19 18 16 21 21 C 1.47263 * 120.00152 * 179.97438 * 19 18 16 22 22 C 1.46685 * 126.94265 * 0.02562 * 21 19 18 23 23 C 1.34485 * 106.33140 * 180.02562 * 22 21 19 24 24 N 1.36453 * 108.85819 * 359.97438 * 23 22 21 25 25 H 0.96998 * 124.84546 * 180.02562 * 24 23 22 26 26 C 1.34657 * 110.29445 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46958 * 299.97270 * 1 2 3 29 29 H 1.09001 * 109.47209 * 59.97344 * 1 2 3 30 30 H 1.08995 * 109.49820 * 301.34152 * 4 2 1 31 31 H 1.09004 * 109.49334 * 61.43459 * 4 2 1 32 32 H 1.09000 * 109.58992 * 65.15409 * 5 4 2 33 33 H 1.09005 * 109.58751 * 185.44224 * 5 4 2 34 34 H 0.96995 * 120.00318 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.58862 * 186.60714 * 15 6 5 36 36 H 1.09001 * 109.58714 * 66.18130 * 15 6 5 37 37 H 0.97006 * 119.99553 * 25.00271 * 18 16 2 38 38 H 1.08000 * 126.83313 * 0.02562 * 22 21 19 39 39 H 1.07999 * 125.57089 * 180.26990 * 23 22 21 40 40 H 1.07997 * 125.79500 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 1.2502 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9765 -2.2733 0.0003 8 1 5.0098 -2.9653 0.8289 9 6 5.8547 -2.4223 -1.0643 10 7 6.0605 -1.4205 -1.8928 11 14 6.7443 -4.0446 -1.3211 12 1 6.3426 -5.0028 -0.2601 13 1 6.3870 -4.5999 -2.6512 14 1 8.2109 -3.8207 -1.2559 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6974 -1.7556 -1.2383 18 7 1.5256 -0.0490 -2.4459 19 6 1.3972 -0.7327 -3.6003 20 8 1.7078 -1.9076 -3.6490 21 6 0.8797 -0.0574 -4.8023 22 6 0.4615 1.3440 -4.9150 23 6 0.0624 1.5184 -6.1874 24 7 0.2034 0.3392 -6.8594 25 1 -0.0168 0.2043 -7.7944 26 6 0.6917 -0.6104 -6.0390 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5134 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6572 -0.2204 2.1399 31 1 1.6978 -1.7554 1.2386 32 1 3.9143 0.3412 1.3673 33 1 3.9417 -1.2821 2.1002 34 1 6.6739 -1.5247 -2.6369 35 1 3.9418 -1.2847 -2.0982 36 1 3.9143 0.3409 -1.3674 37 1 1.2776 0.8880 -2.4070 38 1 0.4720 2.0878 -4.1321 39 1 -0.3048 2.4421 -6.6097 40 1 0.9002 -1.6344 -6.3115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966195371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = 25.165901 kcal Electronic energy + Delta-G solvation = -22052.322707 eV Core-core repulsion = 18868.088392 eV Total energy + Delta-G solvation = -3184.234315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00524 -39.03416 -37.24415 -34.17460 -32.94642 -31.10413 -30.78400 -29.15674 -28.49874 -27.21231 -24.04702 -23.21623 -21.39569 -20.90599 -20.54997 -19.50579 -18.99996 -18.43423 -16.68471 -15.72313 -15.32462 -14.79486 -14.45415 -13.84874 -13.73099 -13.66828 -13.61076 -13.31257 -13.16921 -12.98652 -12.79952 -12.30735 -11.99426 -11.85707 -11.53615 -11.48009 -10.82314 -10.64053 -10.49759 -10.33469 -10.05626 -9.85796 -9.79126 -9.38439 -9.21385 -8.81666 -8.40460 -8.33177 -8.19534 -6.55628 -5.66171 -3.09142 2.01507 2.46909 3.17418 3.48222 3.56102 3.57688 3.92624 4.07667 4.62340 4.92940 5.16384 5.26670 5.35043 5.37996 5.50298 5.51738 5.63504 5.70482 5.87551 6.01743 6.09707 6.12861 6.15293 6.23264 6.36651 6.51376 6.56086 6.67479 6.74708 6.83538 6.88026 6.91939 7.06347 7.19319 7.40977 7.45478 7.85361 7.94009 8.23229 8.57945 8.96608 9.32696 9.96969 10.51890 11.41605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.005985 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.781027 B = 4676.909433 C = 6016.710611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.589 5.589 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.291 1.291 15 C 0.166 3.834 16 C 0.126 3.874 17 H 0.081 0.919 18 N -0.713 5.713 19 C 0.584 3.416 20 O -0.547 6.547 21 C -0.222 4.222 22 C -0.170 4.170 23 C -0.023 4.023 24 N -0.558 5.558 25 H 0.415 0.585 26 C 0.067 3.933 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.016 0.984 37 H 0.391 0.609 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 7.886 -6.204 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.312 5.312 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.219 1.219 15 C 0.039 3.961 16 C 0.021 3.979 17 H 0.099 0.901 18 N -0.363 5.363 19 C 0.371 3.629 20 O -0.425 6.425 21 C -0.232 4.232 22 C -0.195 4.195 23 C -0.151 4.151 24 N -0.152 5.152 25 H 0.251 0.749 26 C -0.068 4.068 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.034 0.966 37 H 0.224 0.776 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.189 7.037 -6.463 17.106 hybrid contribution 0.284 -0.227 -0.678 0.770 sum -13.905 6.810 -7.142 17.051 Atomic orbital electron populations 1.21841 0.96069 1.01513 1.00649 1.21301 0.94534 0.99624 0.95670 0.91603 1.22066 0.98930 1.00027 0.95473 1.20947 0.90861 0.96399 0.90184 1.43982 1.48094 1.39853 0.99242 1.19188 1.09703 1.03196 1.06347 0.91620 1.25018 0.97217 0.97355 0.99712 1.70031 1.37499 1.29006 1.17682 0.86258 0.78843 0.83915 0.77950 1.20228 1.21478 1.21854 1.21111 0.86703 0.97374 0.90863 1.21918 0.98131 0.96333 0.81534 0.90125 1.45809 1.66222 1.13843 1.10417 1.17322 0.77373 0.85893 0.82269 1.90803 1.50818 1.16123 1.84786 1.20577 1.13170 0.94874 0.94616 1.22066 1.05471 0.95384 0.96554 1.21716 1.09628 0.90286 0.93479 1.41607 1.51778 1.09493 1.12368 0.74883 1.21847 1.00190 0.94875 0.89934 0.93005 0.93300 0.93129 0.92734 0.92144 0.96518 0.92717 0.93786 0.88671 0.96610 0.77601 0.83891 0.81676 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.02 37.16 0.34 -1.66 16 2 C -0.09 -1.55 2.27 -90.58 -0.21 -1.76 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.13 -2.20 5.36 -26.61 -0.14 -2.35 16 5 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16 6 N -0.59 -15.46 3.00 -172.31 -0.52 -15.97 16 7 C -0.25 -7.36 9.59 -15.06 -0.14 -7.50 16 8 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 9 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 10 N -0.90 -27.58 11.19 55.49 0.62 -26.95 16 11 Si 0.90 23.07 29.59 -169.99 -5.03 18.04 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 15 C 0.17 4.24 4.89 -3.71 -0.02 4.22 16 16 C 0.13 2.60 2.07 -67.81 -0.14 2.46 16 17 H 0.08 1.89 7.57 -51.93 -0.39 1.50 16 18 N -0.71 -12.74 4.36 -54.82 -0.24 -12.98 16 19 C 0.58 11.40 7.78 -12.60 -0.10 11.30 16 20 O -0.55 -13.12 16.57 5.25 0.09 -13.03 16 21 C -0.22 -3.44 6.29 -103.35 -0.65 -4.09 16 22 C -0.17 -2.04 10.56 -37.50 -0.40 -2.44 16 23 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 24 N -0.56 -5.08 5.90 -12.85 -0.08 -5.15 16 25 H 0.42 2.20 8.96 -40.82 -0.37 1.84 16 26 C 0.07 0.87 11.69 -16.84 -0.20 0.67 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 34 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 2.86 6.04 -51.93 -0.31 2.54 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.39 5.73 7.43 -40.82 -0.30 5.43 16 38 H 0.14 1.44 7.70 -52.49 -0.40 1.04 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -35.73 327.05 -8.12 -43.85 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.93 Total: 5.73 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.97 Total: 1.55 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.21 Total: -61.06 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.73 -8.12 -43.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966195371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.018 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds