Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.45775 * 2 1 4 4 C 1.53043 * 109.46044 * 119.95435 * 2 1 3 5 5 C 1.53186 * 109.31229 * 181.38696 * 4 2 1 6 6 N 1.46928 * 108.77817 * 305.36928 * 5 4 2 7 7 C 1.36940 * 120.63231 * 233.59249 * 6 5 4 8 8 H 1.08006 * 119.99922 * 27.66723 * 7 6 5 9 9 C 1.38810 * 119.99982 * 207.68071 * 7 6 5 10 10 N 1.31620 * 120.00191 * 17.36859 * 9 7 6 11 11 Si 1.86798 * 119.99876 * 197.37546 * 9 7 6 12 12 H 1.48501 * 109.47223 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47303 * 119.99639 * 11 9 7 14 14 H 1.48507 * 109.47127 * 239.99669 * 11 9 7 15 15 C 1.46923 * 118.73903 * 53.60479 * 6 5 4 16 16 C 1.53031 * 109.46005 * 240.02569 * 2 1 3 17 17 H 1.08994 * 109.50245 * 298.59833 * 16 2 1 18 18 N 1.46504 * 109.50022 * 58.66213 * 16 2 1 19 19 C 1.34770 * 120.00431 * 204.99687 * 18 16 2 20 20 O 1.21628 * 119.99845 * 0.02562 * 19 18 16 21 21 C 1.47263 * 120.00152 * 179.97438 * 19 18 16 22 22 C 1.46685 * 126.94265 * 0.02562 * 21 19 18 23 23 C 1.34485 * 106.33140 * 180.02562 * 22 21 19 24 24 N 1.36453 * 108.85819 * 359.97438 * 23 22 21 25 25 H 0.96998 * 124.84546 * 180.02562 * 24 23 22 26 26 C 1.34657 * 110.29445 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46958 * 299.97270 * 1 2 3 29 29 H 1.09001 * 109.47209 * 59.97344 * 1 2 3 30 30 H 1.08995 * 109.49820 * 301.34152 * 4 2 1 31 31 H 1.09004 * 109.49334 * 61.43459 * 4 2 1 32 32 H 1.09000 * 109.58992 * 65.15409 * 5 4 2 33 33 H 1.09005 * 109.58751 * 185.44224 * 5 4 2 34 34 H 0.96995 * 120.00318 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.58862 * 186.60714 * 15 6 5 36 36 H 1.09001 * 109.58714 * 66.18130 * 15 6 5 37 37 H 0.97006 * 119.99553 * 25.00271 * 18 16 2 38 38 H 1.08000 * 126.83313 * 0.02562 * 22 21 19 39 39 H 1.07999 * 125.57089 * 180.26990 * 23 22 21 40 40 H 1.07997 * 125.79500 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 1.2502 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9765 -2.2733 0.0003 8 1 5.0098 -2.9653 0.8289 9 6 5.8547 -2.4223 -1.0643 10 7 6.0605 -1.4205 -1.8928 11 14 6.7443 -4.0446 -1.3211 12 1 6.3426 -5.0028 -0.2601 13 1 6.3870 -4.5999 -2.6512 14 1 8.2109 -3.8207 -1.2559 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6974 -1.7556 -1.2383 18 7 1.5256 -0.0490 -2.4459 19 6 1.3972 -0.7327 -3.6003 20 8 1.7078 -1.9076 -3.6490 21 6 0.8797 -0.0574 -4.8023 22 6 0.4615 1.3440 -4.9150 23 6 0.0624 1.5184 -6.1874 24 7 0.2034 0.3392 -6.8594 25 1 -0.0168 0.2043 -7.7944 26 6 0.6917 -0.6104 -6.0390 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5134 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6572 -0.2204 2.1399 31 1 1.6978 -1.7554 1.2386 32 1 3.9143 0.3412 1.3673 33 1 3.9417 -1.2821 2.1002 34 1 6.6739 -1.5247 -2.6369 35 1 3.9418 -1.2847 -2.0982 36 1 3.9143 0.3409 -1.3674 37 1 1.2776 0.8880 -2.4070 38 1 0.4720 2.0878 -4.1321 39 1 -0.3048 2.4421 -6.6097 40 1 0.9002 -1.6344 -6.3115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966195371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = -0.526863 kcal Electronic energy + Delta-G solvation = -22053.436829 eV Core-core repulsion = 18868.088392 eV Total energy + Delta-G solvation = -3185.348437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96484 -40.57928 -38.90132 -36.03357 -34.61859 -32.83905 -32.07504 -30.35513 -29.84994 -28.93903 -25.94106 -24.72521 -22.91443 -22.51499 -21.52475 -21.10920 -20.21320 -19.54361 -18.73894 -17.17670 -16.92359 -16.66154 -15.90716 -15.58309 -15.26514 -15.08053 -14.85652 -14.67257 -14.54979 -14.32378 -14.06836 -13.84489 -13.51328 -13.26005 -13.03806 -12.98864 -12.75575 -12.56115 -12.30652 -12.13201 -11.89175 -11.61452 -11.42747 -11.17488 -10.81501 -10.55192 -10.05676 -9.67222 -9.25154 -8.68595 -7.88562 -5.34501 0.84532 1.39475 1.44373 1.53111 1.61578 2.22311 2.48244 2.64770 2.71167 3.27784 3.76104 3.85295 4.02298 4.09254 4.18314 4.26360 4.42895 4.51354 4.56673 4.61985 4.69237 4.75898 4.94602 5.00370 5.02176 5.13064 5.18106 5.19664 5.24686 5.34385 5.47925 5.53830 5.57303 5.62685 5.79929 5.84068 5.99484 6.36973 6.69656 6.84000 7.11931 7.50094 7.85637 8.34984 9.16244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.005985 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.781027 B = 4676.909433 C = 6016.710611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.265 4.265 8 H 0.069 0.931 9 C -0.052 4.052 10 N -0.931 5.931 11 Si 0.962 3.038 12 H -0.262 1.262 13 H -0.299 1.299 14 H -0.284 1.284 15 C 0.180 3.820 16 C 0.142 3.858 17 H 0.045 0.955 18 N -0.701 5.701 19 C 0.575 3.425 20 O -0.607 6.607 21 C -0.266 4.266 22 C -0.189 4.189 23 C 0.001 3.999 24 N -0.536 5.536 25 H 0.436 0.564 26 C 0.065 3.935 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.246 0.754 35 H 0.041 0.959 36 H -0.003 1.003 37 H 0.409 0.591 38 H 0.160 0.840 39 H 0.212 0.788 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.834 9.814 -6.215 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.334 5.334 7 C -0.395 4.395 8 H 0.087 0.913 9 C -0.247 4.247 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.186 1.186 13 H -0.226 1.226 14 H -0.211 1.211 15 C 0.053 3.947 16 C 0.035 3.965 17 H 0.064 0.936 18 N -0.351 5.351 19 C 0.366 3.634 20 O -0.490 6.490 21 C -0.276 4.276 22 C -0.212 4.212 23 C -0.127 4.127 24 N -0.132 5.132 25 H 0.276 0.724 26 C -0.073 4.073 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.245 0.755 38 H 0.177 0.823 39 H 0.229 0.771 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.552 9.021 -6.463 19.928 hybrid contribution 0.984 -0.771 -0.719 1.442 sum -15.568 8.250 -7.182 19.026 Atomic orbital electron populations 1.21754 0.92991 1.01557 1.02775 1.21268 0.96952 0.99322 0.92866 0.90308 1.21970 0.95699 1.00202 0.97608 1.21177 0.93611 0.96185 0.87945 1.44262 1.48148 1.39898 1.01059 1.19559 1.09606 1.04029 1.06292 0.91314 1.25808 0.98678 1.00402 0.99857 1.70190 1.38490 1.30855 1.18171 0.85281 0.77912 0.80370 0.77417 1.18608 1.22629 1.21062 1.20784 0.89955 0.94792 0.89209 1.21447 0.94652 0.95714 0.84657 0.93642 1.45617 1.65476 1.14573 1.09460 1.18070 0.76349 0.85390 0.83609 1.90754 1.53644 1.18851 1.85790 1.20457 1.16158 0.97167 0.93814 1.22311 1.06519 0.93857 0.98554 1.22396 1.06711 0.91214 0.92376 1.41624 1.49851 1.08668 1.13079 0.72370 1.21871 0.99932 0.95603 0.89935 0.94027 0.90185 0.91995 0.88395 0.93226 0.96044 0.92525 0.94466 0.94030 0.98487 0.75453 0.82289 0.77093 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.02 71.98 0.65 -2.66 16 2 C -0.08 -2.73 2.27 -10.77 -0.02 -2.75 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.12 -3.84 5.36 30.67 0.16 -3.68 16 5 C 0.14 5.76 6.51 86.36 0.56 6.33 16 6 N -0.61 -33.08 3.00 -699.08 -2.09 -35.18 16 7 C -0.26 -15.80 9.59 84.03 0.81 -14.99 16 8 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 9 C -0.05 -3.18 4.91 84.86 0.42 -2.76 16 10 N -0.93 -60.13 11.19 21.65 0.24 -59.89 16 11 Si 0.96 49.19 29.59 68.60 2.03 51.22 16 12 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.30 -15.68 7.11 99.48 0.71 -14.98 16 14 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 15 C 0.18 9.65 4.89 86.36 0.42 10.07 16 16 C 0.14 6.02 2.07 45.07 0.09 6.12 16 17 H 0.05 2.26 7.57 -2.39 -0.02 2.24 16 18 N -0.70 -25.72 4.36 -445.60 -1.94 -27.66 16 19 C 0.58 23.62 7.78 86.62 0.67 24.29 16 20 O -0.61 -31.43 16.57 -4.12 -0.07 -31.50 16 21 C -0.27 -8.25 6.29 -19.04 -0.12 -8.37 16 22 C -0.19 -4.11 10.56 23.62 0.25 -3.86 16 23 C 0.00 0.02 11.89 83.11 0.99 1.01 16 24 N -0.54 -8.24 5.90 -194.56 -1.15 -9.39 16 25 H 0.44 3.11 8.96 -92.71 -0.83 2.28 16 26 C 0.06 1.64 11.69 83.92 0.98 2.62 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.40 7.36 -2.39 -0.02 1.38 16 30 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 2.34 7.94 -2.38 -0.02 2.32 16 34 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.04 2.67 6.04 -2.38 -0.01 2.66 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.41 11.77 7.43 -92.70 -0.69 11.08 16 38 H 0.16 2.78 7.70 -2.91 -0.02 2.76 16 39 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -84.97 327.05 2.41 -82.56 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.47 Total: 18.49 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.86 Total: 11.35 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -4.94 Total: -132.12 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.07 Total: -31.50 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Total: -84.97 2.41 -82.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966195371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -84.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds