Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.44801 * 2 1 4 4 C 1.53035 * 109.45924 * 240.03465 * 2 1 3 5 5 C 1.53196 * 109.31256 * 178.61157 * 4 2 1 6 6 N 1.46919 * 108.77450 * 54.63574 * 5 4 2 7 7 C 1.36937 * 120.63211 * 126.38778 * 6 5 4 8 8 H 1.08000 * 120.00623 * 207.67941 * 7 6 5 9 9 C 1.38820 * 119.99677 * 27.68735 * 7 6 5 10 10 N 1.31617 * 120.00240 * 17.35185 * 9 7 6 11 11 Si 1.86801 * 119.99781 * 197.35899 * 9 7 6 12 12 H 1.48493 * 109.47449 * 59.99781 * 11 9 7 13 13 H 1.48498 * 109.46841 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46759 * 299.99467 * 11 9 7 15 15 C 1.46933 * 118.76670 * 306.41368 * 6 5 4 16 16 C 1.53038 * 109.46081 * 119.96490 * 2 1 3 17 17 H 1.08997 * 109.49659 * 61.40699 * 16 2 1 18 18 N 1.46498 * 109.50283 * 301.33714 * 16 2 1 19 19 C 1.34773 * 120.00504 * 155.06492 * 18 16 2 20 20 O 1.21627 * 119.99720 * 359.97438 * 19 18 16 21 21 C 1.47265 * 120.00134 * 180.02562 * 19 18 16 22 22 C 1.46682 * 126.94229 * 359.97438 * 21 19 18 23 23 C 1.34485 * 106.33304 * 180.02562 * 22 21 19 24 24 N 1.36454 * 108.85175 * 359.74205 * 23 22 21 25 25 H 0.97003 * 124.84629 * 180.30455 * 24 23 22 26 26 C 1.34654 * 110.29958 * 0.44225 * 24 23 22 27 27 H 1.09007 * 109.47229 * 300.03075 * 1 2 3 28 28 H 1.08996 * 109.47297 * 60.03235 * 1 2 3 29 29 H 1.09003 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.50019 * 298.56220 * 4 2 1 31 31 H 1.09005 * 109.49641 * 58.66315 * 4 2 1 32 32 H 1.09002 * 109.58759 * 174.42714 * 5 4 2 33 33 H 1.08996 * 109.58352 * 294.70434 * 5 4 2 34 34 H 0.96998 * 120.00414 * 180.02562 * 10 9 7 35 35 H 1.09006 * 109.55881 * 293.78363 * 15 6 5 36 36 H 1.09005 * 109.61810 * 173.36089 * 15 6 5 37 37 H 0.97005 * 119.99728 * 335.07185 * 18 16 2 38 38 H 1.08005 * 126.83301 * 359.97196 * 22 21 19 39 39 H 1.07999 * 125.57489 * 180.02562 * 23 22 21 40 40 H 1.08004 * 125.80211 * 179.82912 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2643 6 7 4.0679 -1.2487 -0.0001 7 6 4.9761 -2.2736 -0.0001 8 1 5.0091 -2.9659 0.8282 9 6 5.8544 -2.4226 -1.0647 10 7 6.0604 -1.4208 -1.8931 11 14 6.7439 -4.0450 -1.3216 12 1 5.7489 -5.1286 -1.5231 13 1 7.6171 -3.9465 -2.5186 14 1 7.5726 -4.3496 -0.1275 15 6 3.5714 -0.6892 1.2646 16 6 2.0399 -0.7207 1.2501 17 1 1.6974 -1.7554 1.2385 18 7 1.5257 -0.0487 2.4460 19 6 1.3985 -0.7319 3.6008 20 8 1.7102 -1.9065 3.6499 21 6 0.8810 -0.0564 4.8027 22 6 0.4617 1.3447 4.9150 23 6 0.0642 1.5197 6.1878 24 7 0.2013 0.3394 6.8587 25 1 -0.0229 0.2035 7.7927 26 6 0.6951 -0.6087 6.0400 27 1 -0.3634 0.5143 0.8898 28 1 -0.3634 0.5133 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6978 -1.7556 -1.2383 31 1 1.6571 -0.2206 -2.1398 32 1 3.9417 -1.2843 -2.0985 33 1 3.9142 0.3408 -1.3699 34 1 6.6738 -1.5250 -2.6372 35 1 3.9148 0.3401 1.3680 36 1 3.9413 -1.2855 2.0988 37 1 1.2766 0.8880 2.4067 38 1 0.4712 2.0881 4.1316 39 1 -0.3075 2.4422 6.6087 40 1 0.9042 -1.6326 6.3128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966195374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 0.155914 kcal Electronic energy + Delta-G solvation = -21779.329159 eV Core-core repulsion = 18594.010330 eV Total energy + Delta-G solvation = -3185.318830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96142 -40.61571 -38.92687 -36.12422 -34.42097 -33.02738 -32.06892 -30.38869 -29.88044 -28.87647 -25.95774 -24.68494 -22.92768 -22.59949 -21.53341 -21.11503 -20.22103 -19.53287 -18.70825 -17.14301 -16.95001 -16.61598 -16.04966 -15.56637 -15.28623 -15.15453 -14.84377 -14.64708 -14.54634 -14.35560 -14.11774 -13.83452 -13.53194 -13.18223 -13.12982 -12.97172 -12.72565 -12.63475 -12.30654 -12.01653 -11.94442 -11.65052 -11.40446 -11.23085 -10.84323 -10.58351 -10.08586 -9.67652 -9.24138 -8.68420 -7.90026 -5.35436 0.84550 1.44185 1.46919 1.54482 1.62532 2.19836 2.49370 2.65817 2.68093 3.23558 3.72909 3.78116 4.03336 4.09234 4.15036 4.24315 4.44675 4.47321 4.55835 4.58256 4.68150 4.77300 4.94593 4.97981 5.03343 5.04636 5.11440 5.17060 5.24818 5.28832 5.46692 5.49213 5.62837 5.64234 5.78096 5.82327 6.00978 6.36922 6.69186 6.82048 7.13095 7.46192 7.82673 8.33176 9.15553 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.004445 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.919128 B = 6296.996880 C = 7055.859048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.123 4.123 5 C 0.173 3.827 6 N -0.607 5.607 7 C -0.271 4.271 8 H 0.051 0.949 9 C -0.042 4.042 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.145 3.855 16 C 0.152 3.848 17 H 0.052 0.948 18 N -0.702 5.702 19 C 0.579 3.421 20 O -0.605 6.605 21 C -0.266 4.266 22 C -0.188 4.188 23 C -0.002 4.002 24 N -0.537 5.537 25 H 0.436 0.564 26 C 0.068 3.932 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.253 0.747 35 H 0.019 0.981 36 H 0.026 0.974 37 H 0.411 0.589 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.696 9.822 14.293 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.162 4.162 5 C 0.047 3.953 6 N -0.330 5.330 7 C -0.402 4.402 8 H 0.069 0.931 9 C -0.238 4.238 10 N -0.574 5.574 11 Si 0.794 3.206 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.205 1.205 15 C 0.018 3.982 16 C 0.045 3.955 17 H 0.070 0.930 18 N -0.352 5.352 19 C 0.370 3.630 20 O -0.488 6.488 21 C -0.276 4.276 22 C -0.211 4.211 23 C -0.130 4.130 24 N -0.133 5.133 25 H 0.276 0.724 26 C -0.070 4.070 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.248 0.752 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.411 9.042 14.322 23.584 hybrid contribution 0.928 -0.772 -0.014 1.207 sum -15.482 8.270 14.308 22.646 Atomic orbital electron populations 1.21758 0.92916 1.01605 1.02810 1.21229 0.96972 0.99304 0.92649 0.90163 1.22085 0.96703 0.99772 0.97654 1.20711 0.90671 0.95418 0.88452 1.44215 1.48262 1.39755 1.00817 1.19376 1.10727 1.03768 1.06292 0.93105 1.25714 0.98014 1.00558 0.99513 1.70161 1.38405 1.30604 1.18246 0.85367 0.78084 0.79957 0.77210 1.20566 1.21018 1.20453 1.21218 0.93132 0.95533 0.88285 1.21198 0.93495 0.96190 0.84618 0.92952 1.45637 1.65599 1.14801 1.09165 1.18022 0.76283 0.85306 0.83424 1.90755 1.53684 1.18570 1.85818 1.20405 1.16478 0.97035 0.93729 1.22320 1.06450 0.94012 0.98358 1.22380 1.06850 0.91195 0.92539 1.41656 1.49643 1.08710 1.13298 0.72409 1.21917 0.99579 0.95624 0.89879 0.91408 0.90697 0.93983 0.93662 0.89719 0.92592 0.97693 0.93794 0.96330 0.95496 0.75194 0.82301 0.77418 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.02 71.98 0.65 -2.67 16 2 C -0.08 -2.67 2.27 -10.77 -0.02 -2.69 16 3 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 4 C -0.12 -4.67 5.36 30.67 0.16 -4.51 16 5 C 0.17 8.61 5.31 86.37 0.46 9.07 16 6 N -0.61 -33.29 3.00 -699.07 -2.09 -35.38 16 7 C -0.27 -16.43 9.58 84.04 0.81 -15.62 16 8 H 0.05 3.15 7.89 -2.91 -0.02 3.12 16 9 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 10 N -0.93 -56.49 11.19 21.65 0.24 -56.25 16 11 Si 0.97 47.44 29.59 68.60 2.03 49.47 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 15 C 0.15 6.98 6.09 86.36 0.53 7.50 16 16 C 0.15 5.90 2.06 45.07 0.09 5.99 16 17 H 0.05 2.40 7.58 -2.39 -0.02 2.39 16 18 N -0.70 -22.23 4.36 -445.59 -1.94 -24.18 16 19 C 0.58 20.43 7.78 86.62 0.67 21.10 16 20 O -0.61 -27.34 16.58 -4.12 -0.07 -27.40 16 21 C -0.27 -6.98 6.29 -19.04 -0.12 -7.10 16 22 C -0.19 -3.39 10.56 23.62 0.25 -3.14 16 23 C 0.00 -0.02 11.89 83.11 0.99 0.97 16 24 N -0.54 -6.41 5.90 -194.56 -1.15 -7.56 16 25 H 0.44 1.80 8.96 -92.71 -0.83 0.97 16 26 C 0.07 1.43 11.69 83.92 0.98 2.41 16 27 H 0.07 1.45 7.36 -2.38 -0.02 1.43 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 32 H 0.06 3.14 6.04 -2.39 -0.01 3.12 16 33 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.03 1.41 7.93 -2.38 -0.02 1.40 16 37 H 0.41 9.98 7.43 -92.70 -0.69 9.29 16 38 H 0.16 2.23 7.70 -2.91 -0.02 2.20 16 39 H 0.21 0.69 8.06 -2.91 -0.02 0.66 16 40 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -80.09 327.05 2.41 -77.68 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -0.47 Total: 14.39 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.86 Total: 9.23 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -4.94 Total: -123.37 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.07 Total: -27.40 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -80.09 2.41 -77.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966195374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.832 kcal (2) G-P(sol) polarization free energy of solvation -80.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds