Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47527 * 2 1 4 4 N 1.46508 * 109.46892 * 240.00174 * 2 1 3 5 5 C 1.34775 * 119.99513 * 85.00568 * 4 2 1 6 6 O 1.21696 * 120.00604 * 354.74258 * 5 4 2 7 7 C 1.46677 * 119.99824 * 174.74905 * 5 4 2 8 8 C 1.37874 * 126.23297 * 4.30126 * 7 5 4 9 9 C 1.39841 * 107.08722 * 179.97438 * 8 7 5 10 10 C 1.35447 * 107.86364 * 0.02562 * 9 8 7 11 11 N 1.35539 * 108.87469 * 359.76300 * 10 9 8 12 12 C 1.46495 * 125.68185 * 180.26366 * 11 10 9 13 13 C 1.52999 * 109.47061 * 120.00788 * 2 1 3 14 14 C 1.53493 * 114.20351 * 299.99425 * 13 2 1 15 15 N 1.47067 * 87.98809 * 220.34775 * 14 13 2 16 16 C 1.36937 * 136.05760 * 207.08562 * 15 14 13 17 17 H 1.08000 * 120.00167 * 8.57736 * 16 15 14 18 18 C 1.38819 * 119.99754 * 188.57017 * 16 15 14 19 19 N 1.31616 * 120.00065 * 8.05763 * 18 16 15 20 20 Si 1.86796 * 119.99754 * 188.05183 * 18 16 15 21 21 H 1.48497 * 109.47357 * 265.02816 * 20 18 16 22 22 H 1.48495 * 109.47524 * 25.03276 * 20 18 16 23 23 H 1.48500 * 109.46978 * 145.03263 * 20 18 16 24 24 C 1.47064 * 87.88397 * 27.34510 * 15 14 13 25 25 H 1.08998 * 109.46755 * 299.99467 * 1 2 3 26 26 H 1.09002 * 109.47112 * 59.99559 * 1 2 3 27 27 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99969 * 265.00360 * 4 2 1 29 29 H 1.07999 * 126.45979 * 359.93702 * 8 7 5 30 30 H 1.08000 * 126.06649 * 180.02562 * 9 8 7 31 31 H 1.08003 * 125.56626 * 179.97438 * 10 9 8 32 32 H 1.09002 * 109.47285 * 264.67301 * 12 11 10 33 33 H 1.08997 * 109.46846 * 24.67226 * 12 11 10 34 34 H 1.08997 * 109.47032 * 144.67735 * 12 11 10 35 35 H 1.08999 * 113.41822 * 73.19799 * 13 2 1 36 36 H 1.08999 * 113.46723 * 105.56789 * 14 13 2 37 37 H 1.09003 * 113.52376 * 335.13385 * 14 13 2 38 38 H 0.96998 * 120.00392 * 179.97438 * 19 18 16 39 39 H 1.08997 * 113.47174 * 87.43658 * 24 15 14 40 40 H 1.08998 * 113.46818 * 217.88061 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1471 -0.0181 -2.3571 6 8 1.7685 1.1357 -2.4373 7 6 2.7434 -0.6770 -3.5241 8 6 3.1371 -1.9960 -3.6025 9 6 3.6479 -2.1965 -4.8888 10 6 3.5597 -1.0225 -5.5585 11 7 3.0073 -0.0923 -4.7420 12 6 2.7380 1.3035 -5.0960 13 6 2.0400 -0.7214 1.2491 14 6 1.5899 -0.0848 2.5713 15 7 2.9390 -0.3448 3.0958 16 6 3.4926 -0.5607 4.3296 17 1 2.8555 -0.6986 5.1907 18 6 4.8727 -0.6023 4.4734 19 7 5.6498 -0.2787 3.4617 20 14 5.6267 -1.1176 6.1029 21 1 5.9337 0.0904 6.9103 22 1 4.6677 -1.9767 6.8426 23 1 6.8785 -1.8759 5.8513 24 6 3.4330 -0.2644 1.7130 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6318 -1.1528 29 1 3.0653 -2.7349 -2.8182 30 1 4.0426 -3.1230 -5.2788 31 1 3.8748 -0.8557 -6.5780 32 1 3.5679 1.9286 -4.7662 33 1 2.6259 1.3891 -6.1768 34 1 1.8201 1.6314 -4.6083 35 1 1.9118 -1.8030 1.2074 36 1 0.8096 -0.6496 3.0815 37 1 1.3546 0.9760 2.4855 38 1 6.6142 -0.3074 3.5622 39 1 3.6838 0.7490 1.3998 40 1 4.2228 -0.9822 1.4917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969320106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = 69.399520 kcal Electronic energy + Delta-G solvation = -21340.376399 eV Core-core repulsion = 18158.060197 eV Total energy + Delta-G solvation = -3182.316201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37751 -39.35784 -38.00390 -34.88035 -32.99008 -32.18845 -30.85075 -28.78977 -27.52753 -26.56008 -24.80169 -24.03071 -22.79543 -21.10996 -20.35822 -19.92679 -18.89457 -17.72233 -16.72140 -16.00834 -15.66454 -15.60404 -14.84190 -14.39266 -14.26921 -13.84555 -13.69163 -13.39155 -13.26244 -13.03742 -12.48724 -12.42408 -12.36070 -12.12251 -12.02420 -11.66443 -11.37617 -11.18629 -10.97134 -10.75696 -10.37013 -10.02136 -9.78917 -9.74676 -9.20642 -8.85007 -8.80339 -8.75819 -8.24348 -6.86911 -5.78183 -3.09188 1.49679 2.61718 2.70134 3.39353 3.44175 3.45793 3.47002 3.53570 4.46087 4.69847 4.81072 4.89441 5.12943 5.15247 5.26971 5.33080 5.34948 5.35738 5.52764 5.54698 5.70620 5.80391 5.95566 5.99458 6.06653 6.11214 6.25648 6.39766 6.43324 6.57516 6.65457 6.71321 6.84654 6.92377 7.13244 7.18651 7.35596 7.52817 7.70685 7.97280 8.35890 9.03613 9.70429 10.65964 11.40573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.003839 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.765112 B = 7291.364461 C = 7920.560289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.087 0.913 4 N -0.705 5.705 5 C 0.588 3.412 6 O -0.555 6.555 7 C -0.047 4.047 8 C -0.142 4.142 9 C -0.208 4.208 10 C 0.008 3.992 11 N -0.412 5.412 12 C 0.068 3.932 13 C -0.154 4.154 14 C 0.129 3.871 15 N -0.610 5.610 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.279 1.279 23 H -0.290 1.290 24 C 0.171 3.829 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.402 0.598 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.166 0.834 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.254 0.746 39 H 0.030 0.970 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -2.187 -18.075 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.106 0.894 4 N -0.354 5.354 5 C 0.376 3.624 6 O -0.436 6.436 7 C -0.161 4.161 8 C -0.168 4.168 9 C -0.232 4.232 10 C -0.127 4.127 11 N -0.085 5.085 12 C -0.073 4.073 13 C -0.174 4.174 14 C 0.002 3.998 15 N -0.335 5.335 16 C -0.348 4.348 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.564 5.564 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.045 3.955 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.236 0.764 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.184 0.816 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.327 -1.008 -17.905 19.372 hybrid contribution 0.789 -0.560 0.777 1.241 sum -6.538 -1.568 -17.127 18.400 Atomic orbital electron populations 1.22130 0.95526 1.01835 1.02144 1.21019 0.93587 0.97306 0.82704 0.89450 1.45763 1.66571 1.14102 1.08997 1.16974 0.77965 0.85419 0.82082 1.90758 1.51149 1.17488 1.84169 1.20180 1.13565 0.93935 0.88433 1.21387 1.03096 0.94024 0.98298 1.20812 1.09144 0.98104 0.95182 1.21988 1.04318 0.89141 0.97289 1.43856 1.44838 1.09984 1.09846 1.22233 1.04562 0.78893 1.01602 1.23675 1.01552 0.99771 0.92395 1.22318 0.90398 0.96735 0.90342 1.45691 1.03046 1.82062 1.02710 1.18948 0.89799 1.41908 0.84183 0.90106 1.24849 0.95937 1.01730 0.97834 1.69864 1.03325 1.52820 1.30408 0.86113 0.78786 0.78139 0.82800 1.21608 1.20469 1.21574 1.22018 0.91938 0.97839 0.83706 0.91368 0.92675 0.92672 0.76365 0.83779 0.84102 0.81632 0.90585 0.90095 0.88081 0.88932 0.94059 0.94950 0.93616 0.95273 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.29 37.16 0.35 -1.79 16 2 C 0.16 2.47 2.43 -67.93 -0.17 2.31 16 3 H 0.09 1.57 7.40 -51.93 -0.38 1.19 16 4 N -0.70 -10.05 5.06 -55.11 -0.28 -10.33 16 5 C 0.59 9.11 7.74 -12.85 -0.10 9.01 16 6 O -0.56 -9.90 14.43 5.19 0.07 -9.83 16 7 C -0.05 -0.65 6.89 -81.98 -0.56 -1.22 16 8 C -0.14 -1.70 10.36 -39.12 -0.41 -2.10 16 9 C -0.21 -2.20 10.81 -39.98 -0.43 -2.63 16 10 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 11 N -0.41 -4.95 3.16 -120.24 -0.38 -5.33 16 12 C 0.07 0.67 10.48 59.84 0.63 1.29 16 13 C -0.15 -2.75 3.67 -89.97 -0.33 -3.08 16 14 C 0.13 2.61 7.33 -8.51 -0.06 2.55 16 15 N -0.61 -15.81 3.76 -184.60 -0.69 -16.51 16 16 C -0.22 -6.28 10.73 -15.06 -0.16 -6.44 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -27.75 11.93 55.49 0.66 -27.09 16 20 Si 0.91 22.25 29.56 -169.99 -5.03 17.22 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.17 4.03 6.77 -8.37 -0.06 3.97 16 25 H 0.07 0.89 7.48 -51.93 -0.39 0.50 16 26 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.40 4.91 7.50 -40.82 -0.31 4.60 16 29 H 0.14 1.45 7.45 -52.49 -0.39 1.06 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.10 1.15 6.55 -51.93 -0.34 0.81 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.03 0.74 7.93 -51.93 -0.41 0.32 16 40 H 0.06 1.44 7.72 -51.93 -0.40 1.04 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -34.18 333.76 -8.17 -42.35 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.97 Total: 3.02 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.59 Total: 1.47 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.69 Total: -59.27 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.18 -8.17 -42.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969320106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds