Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47527 * 2 1 4 4 N 1.46508 * 109.46892 * 240.00174 * 2 1 3 5 5 C 1.34775 * 119.99513 * 85.00568 * 4 2 1 6 6 O 1.21696 * 120.00604 * 354.74258 * 5 4 2 7 7 C 1.46677 * 119.99824 * 174.74905 * 5 4 2 8 8 C 1.37874 * 126.23297 * 4.30126 * 7 5 4 9 9 C 1.39841 * 107.08722 * 179.97438 * 8 7 5 10 10 C 1.35447 * 107.86364 * 0.02562 * 9 8 7 11 11 N 1.35539 * 108.87469 * 359.76300 * 10 9 8 12 12 C 1.46495 * 125.68185 * 180.26366 * 11 10 9 13 13 C 1.52999 * 109.47061 * 120.00788 * 2 1 3 14 14 C 1.53493 * 114.20351 * 299.99425 * 13 2 1 15 15 N 1.47067 * 87.98809 * 220.34775 * 14 13 2 16 16 C 1.36937 * 136.05760 * 207.08562 * 15 14 13 17 17 H 1.08000 * 120.00167 * 8.57736 * 16 15 14 18 18 C 1.38819 * 119.99754 * 188.57017 * 16 15 14 19 19 N 1.31616 * 120.00065 * 8.05763 * 18 16 15 20 20 Si 1.86796 * 119.99754 * 188.05183 * 18 16 15 21 21 H 1.48497 * 109.47357 * 265.02816 * 20 18 16 22 22 H 1.48495 * 109.47524 * 25.03276 * 20 18 16 23 23 H 1.48500 * 109.46978 * 145.03263 * 20 18 16 24 24 C 1.47064 * 87.88397 * 27.34510 * 15 14 13 25 25 H 1.08998 * 109.46755 * 299.99467 * 1 2 3 26 26 H 1.09002 * 109.47112 * 59.99559 * 1 2 3 27 27 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99969 * 265.00360 * 4 2 1 29 29 H 1.07999 * 126.45979 * 359.93702 * 8 7 5 30 30 H 1.08000 * 126.06649 * 180.02562 * 9 8 7 31 31 H 1.08003 * 125.56626 * 179.97438 * 10 9 8 32 32 H 1.09002 * 109.47285 * 264.67301 * 12 11 10 33 33 H 1.08997 * 109.46846 * 24.67226 * 12 11 10 34 34 H 1.08997 * 109.47032 * 144.67735 * 12 11 10 35 35 H 1.08999 * 113.41822 * 73.19799 * 13 2 1 36 36 H 1.08999 * 113.46723 * 105.56789 * 14 13 2 37 37 H 1.09003 * 113.52376 * 335.13385 * 14 13 2 38 38 H 0.96998 * 120.00392 * 179.97438 * 19 18 16 39 39 H 1.08997 * 113.47174 * 87.43658 * 24 15 14 40 40 H 1.08998 * 113.46818 * 217.88061 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1471 -0.0181 -2.3571 6 8 1.7685 1.1357 -2.4373 7 6 2.7434 -0.6770 -3.5241 8 6 3.1371 -1.9960 -3.6025 9 6 3.6479 -2.1965 -4.8888 10 6 3.5597 -1.0225 -5.5585 11 7 3.0073 -0.0923 -4.7420 12 6 2.7380 1.3035 -5.0960 13 6 2.0400 -0.7214 1.2491 14 6 1.5899 -0.0848 2.5713 15 7 2.9390 -0.3448 3.0958 16 6 3.4926 -0.5607 4.3296 17 1 2.8555 -0.6986 5.1907 18 6 4.8727 -0.6023 4.4734 19 7 5.6498 -0.2787 3.4617 20 14 5.6267 -1.1176 6.1029 21 1 5.9337 0.0904 6.9103 22 1 4.6677 -1.9767 6.8426 23 1 6.8785 -1.8759 5.8513 24 6 3.4330 -0.2644 1.7130 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6318 -1.1528 29 1 3.0653 -2.7349 -2.8182 30 1 4.0426 -3.1230 -5.2788 31 1 3.8748 -0.8557 -6.5780 32 1 3.5679 1.9286 -4.7662 33 1 2.6259 1.3891 -6.1768 34 1 1.8201 1.6314 -4.6083 35 1 1.9118 -1.8030 1.2074 36 1 0.8096 -0.6496 3.0815 37 1 1.3546 0.9760 2.4855 38 1 6.6142 -0.3074 3.5622 39 1 3.6838 0.7490 1.3998 40 1 4.2228 -0.9822 1.4917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969320106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = 46.717144 kcal Electronic energy + Delta-G solvation = -21341.359980 eV Core-core repulsion = 18158.060197 eV Total energy + Delta-G solvation = -3183.299783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27816 -40.72643 -39.51740 -36.25823 -34.32994 -33.70551 -32.14878 -29.87790 -29.30494 -27.35375 -26.50711 -25.70785 -24.14750 -22.43840 -21.33610 -21.25625 -20.17181 -18.82875 -18.66068 -17.30331 -16.95458 -16.67415 -16.55997 -15.79245 -15.47896 -15.39272 -14.95872 -14.68574 -14.32552 -14.12163 -14.06104 -13.51555 -13.28573 -13.24147 -13.14289 -13.01319 -12.98475 -12.86186 -12.68239 -12.59426 -12.05762 -11.75094 -11.58186 -11.10239 -10.93733 -10.84200 -10.11287 -9.65725 -9.13700 -8.95224 -7.94903 -5.27700 0.51589 1.45338 1.47261 1.57190 1.71321 1.87412 2.39259 2.45587 2.47779 3.28866 3.39496 3.64507 3.84107 3.98647 4.01660 4.22024 4.28262 4.38155 4.47194 4.51447 4.56290 4.58584 4.74013 4.75664 4.82853 4.85894 5.00295 5.08079 5.18657 5.20119 5.30461 5.34106 5.42788 5.53132 5.63431 5.85674 5.89013 6.03608 6.36279 6.58311 6.87477 7.21170 7.57527 8.59525 9.24470 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.003839 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.765112 B = 7291.364461 C = 7920.560289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 H 0.059 0.941 4 N -0.700 5.700 5 C 0.584 3.416 6 O -0.588 6.588 7 C -0.090 4.090 8 C -0.140 4.140 9 C -0.222 4.222 10 C 0.022 3.978 11 N -0.422 5.422 12 C 0.067 3.933 13 C -0.112 4.112 14 C 0.129 3.871 15 N -0.642 5.642 16 C -0.233 4.233 17 H 0.089 0.911 18 C -0.068 4.068 19 N -0.957 5.957 20 Si 0.982 3.018 21 H -0.288 1.288 22 H -0.263 1.263 23 H -0.293 1.293 24 C 0.168 3.832 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.412 0.588 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.205 0.795 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.249 0.751 39 H 0.003 0.997 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 -3.665 -19.039 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.078 0.922 4 N -0.350 5.350 5 C 0.373 3.627 6 O -0.471 6.471 7 C -0.203 4.203 8 C -0.166 4.166 9 C -0.246 4.246 10 C -0.113 4.113 11 N -0.095 5.095 12 C -0.074 4.074 13 C -0.132 4.132 14 C 0.004 3.996 15 N -0.368 5.368 16 C -0.361 4.361 17 H 0.107 0.893 18 C -0.261 4.261 19 N -0.605 5.605 20 Si 0.809 3.191 21 H -0.215 1.215 22 H -0.187 1.187 23 H -0.220 1.220 24 C 0.042 3.958 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.175 0.825 30 H 0.182 0.818 31 H 0.222 0.778 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.322 -2.504 -18.863 20.768 hybrid contribution 1.084 -0.088 0.985 1.467 sum -7.238 -2.592 -17.878 19.461 Atomic orbital electron populations 1.22041 0.93131 1.03207 1.02271 1.20766 0.95211 0.95531 0.82268 0.92243 1.45637 1.66507 1.14521 1.08371 1.17300 0.77510 0.85089 0.82757 1.90731 1.52696 1.18873 1.84809 1.20090 1.16333 0.94962 0.88921 1.21724 1.01950 0.93522 0.99437 1.21203 1.09294 0.99440 0.94644 1.22715 1.01883 0.88333 0.98393 1.44120 1.44959 1.10881 1.09586 1.22305 1.03263 0.78056 1.03733 1.23333 0.96573 1.00731 0.92585 1.22478 0.88592 0.97530 0.91044 1.46104 1.05675 1.82306 1.02678 1.19418 0.90367 1.40813 0.85531 0.89323 1.25746 0.96497 1.02412 1.01440 1.70059 1.03100 1.54654 1.32690 0.85016 0.77718 0.77704 0.78618 1.21481 1.18688 1.21977 1.21949 0.94260 0.95819 0.83809 0.90613 0.93201 0.90617 0.75110 0.82520 0.81752 0.77788 0.91065 0.86292 0.90239 0.86959 0.91719 0.94396 0.94258 0.97927 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16 2 C 0.17 5.18 2.43 44.99 0.11 5.29 16 3 H 0.06 2.21 7.40 -2.39 -0.02 2.19 16 4 N -0.70 -19.89 5.06 -446.48 -2.26 -22.15 16 5 C 0.58 18.41 7.74 86.45 0.67 19.08 16 6 O -0.59 -21.74 14.43 -4.34 -0.06 -21.81 16 7 C -0.09 -2.46 6.89 40.35 0.28 -2.18 16 8 C -0.14 -3.16 10.36 22.57 0.23 -2.92 16 9 C -0.22 -4.14 10.81 22.01 0.24 -3.90 16 10 C 0.02 0.39 11.37 83.48 0.95 1.33 16 11 N -0.42 -9.64 3.16 -534.32 -1.69 -11.33 16 12 C 0.07 1.26 10.48 127.77 1.34 2.60 16 13 C -0.11 -3.95 3.67 -10.37 -0.04 -3.98 16 14 C 0.13 5.10 7.33 83.17 0.61 5.71 16 15 N -0.64 -33.58 3.76 -737.95 -2.77 -36.35 16 16 C -0.23 -13.31 10.73 84.04 0.90 -12.41 16 17 H 0.09 4.77 7.84 -2.91 -0.02 4.75 16 18 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 19 N -0.96 -59.66 11.93 21.65 0.26 -59.41 16 20 Si 0.98 46.17 29.56 68.60 2.03 48.20 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C 0.17 8.17 6.77 83.27 0.56 8.73 16 25 H 0.07 1.81 7.48 -2.39 -0.02 1.79 16 26 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.41 9.76 7.50 -92.71 -0.70 9.06 16 29 H 0.16 2.93 7.45 -2.91 -0.02 2.91 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.12 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.08 1.86 6.55 -2.39 -0.02 1.84 16 35 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 38 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 40 H 0.03 1.38 7.72 -2.39 -0.02 1.36 16 Total: -1.00 -76.49 333.76 2.83 -73.67 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.34 Total: 18.40 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.99 Total: 10.78 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -6.46 Total: -129.23 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.49 2.83 -73.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969320106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.383 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds