Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21624 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.47259 * 120.00030 * 179.97438 * 5 4 2 8 8 C 1.46681 * 126.94612 * 0.02562 * 7 5 4 9 9 C 1.34481 * 106.33596 * 180.02562 * 8 7 5 10 10 N 1.36449 * 108.85919 * 359.97438 * 9 8 7 11 11 C 1.46500 * 124.85599 * 179.97438 * 10 9 8 12 12 C 1.34661 * 110.29229 * 359.73010 * 10 9 8 13 13 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 14 14 C 1.53496 * 114.20179 * 60.00300 * 13 2 1 15 15 N 1.47070 * 87.98352 * 87.52002 * 14 13 2 16 16 C 1.36935 * 136.05550 * 207.07944 * 15 14 13 17 17 H 1.08005 * 120.00172 * 6.50069 * 16 15 14 18 18 C 1.38815 * 119.99990 * 186.49806 * 16 15 14 19 19 N 1.31619 * 119.99663 * 6.42579 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 186.42252 * 18 16 15 21 21 H 1.48495 * 109.47340 * 265.02201 * 20 18 16 22 22 H 1.48498 * 109.46951 * 25.02385 * 20 18 16 23 23 H 1.48498 * 109.46744 * 145.01993 * 20 18 16 24 24 C 1.47064 * 87.88277 * 27.34197 * 15 14 13 25 25 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 26 26 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 27 27 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 29 29 H 1.08003 * 126.83145 * 359.96790 * 8 7 5 30 30 H 1.08004 * 125.57331 * 179.97438 * 9 8 7 31 31 H 1.08991 * 109.47299 * 90.02133 * 11 10 9 32 32 H 1.08993 * 109.46919 * 210.02726 * 11 10 9 33 33 H 1.09000 * 109.46871 * 330.02174 * 11 10 9 34 34 H 1.07998 * 125.80281 * 180.30401 * 12 10 9 35 35 H 1.08996 * 113.41116 * 286.80792 * 13 2 1 36 36 H 1.09004 * 113.46865 * 332.74440 * 14 13 2 37 37 H 1.08993 * 113.51976 * 202.30849 * 14 13 2 38 38 H 0.97005 * 119.99413 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.46743 * 87.44096 * 24 15 14 40 40 H 1.08999 * 113.46191 * 217.87327 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8580 1.1619 2.4117 7 6 2.6372 -0.7126 3.5597 8 6 3.0274 -2.1226 3.6662 9 6 3.4069 -2.3147 4.9420 10 7 3.2808 -1.1383 5.6216 11 6 3.5993 -0.9521 7.0394 12 6 2.8266 -0.1715 4.8015 13 6 2.0401 -0.7213 -1.2492 14 6 1.5899 -0.0847 -2.5714 15 7 2.7724 0.7863 -2.4944 16 6 3.1106 2.0322 -2.9510 17 1 2.3680 2.6506 -3.4334 18 6 4.4080 2.5005 -2.7940 19 7 5.3428 1.7030 -2.3223 20 14 4.8269 4.2623 -3.2520 21 1 5.3584 4.3005 -4.6381 22 1 3.6036 5.0999 -3.1677 23 1 5.8517 4.7872 -2.3142 24 6 3.4341 -0.2723 -1.7170 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6318 1.1527 29 1 3.0120 -2.8599 2.8772 30 1 3.7547 -3.2477 5.3603 31 1 4.6438 -0.6579 7.1415 32 1 2.9602 -0.1738 7.4562 33 1 3.4309 -1.8862 7.5753 34 1 2.6409 0.8558 5.0781 35 1 1.9118 -1.8029 -1.2074 36 1 0.6467 0.4561 -2.4938 37 1 1.6124 -0.7736 -3.4157 38 1 6.2494 2.0301 -2.2129 39 1 3.9433 -1.0113 -2.3356 40 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969493309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = 73.000662 kcal Electronic energy + Delta-G solvation = -21387.225756 eV Core-core repulsion = 18205.065712 eV Total energy + Delta-G solvation = -3182.160044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20187 -39.22451 -37.86529 -34.36283 -32.93572 -32.03117 -30.10082 -29.09083 -27.49929 -26.73144 -24.64938 -23.79539 -22.63571 -21.20893 -20.09256 -19.54381 -18.64236 -17.54055 -16.61449 -15.82240 -15.53757 -15.50451 -14.74665 -14.41952 -14.13627 -13.77366 -13.73560 -13.15849 -13.04640 -12.92907 -12.66230 -12.44867 -12.42420 -12.01375 -11.81503 -11.61152 -11.28531 -10.83355 -10.66291 -10.60521 -10.21228 -9.79667 -9.67848 -9.42400 -9.07743 -8.71196 -8.66147 -8.49405 -8.26130 -6.76536 -5.67746 -2.97785 1.92717 2.42375 2.72567 3.47049 3.52402 3.54907 3.79900 3.96282 4.48938 4.56550 4.81898 4.83775 4.96448 5.08561 5.27092 5.38381 5.42875 5.47296 5.48534 5.66115 5.88389 5.91531 6.02294 6.11045 6.18673 6.25489 6.42353 6.59177 6.67674 6.72941 6.77318 6.90232 6.97312 7.13059 7.16087 7.30847 7.42084 7.65468 8.07709 8.11830 8.83419 9.14072 9.81207 10.76141 11.51084 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.004332 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.923545 B = 6462.369562 C = 7137.213841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.101 0.899 4 N -0.714 5.714 5 C 0.588 3.412 6 O -0.553 6.553 7 C -0.225 4.225 8 C -0.167 4.167 9 C -0.022 4.022 10 N -0.451 5.451 11 C 0.070 3.930 12 C 0.068 3.932 13 C -0.155 4.155 14 C 0.125 3.875 15 N -0.607 5.607 16 C -0.217 4.217 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.279 1.279 23 H -0.290 1.290 24 C 0.166 3.834 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.394 0.606 29 H 0.145 0.855 30 H 0.165 0.835 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.252 0.748 39 H 0.027 0.973 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -11.188 17.108 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.119 0.881 4 N -0.363 5.363 5 C 0.376 3.624 6 O -0.433 6.433 7 C -0.235 4.235 8 C -0.191 4.191 9 C -0.149 4.149 10 N -0.127 5.127 11 C -0.071 4.071 12 C -0.066 4.066 13 C -0.175 4.175 14 C -0.002 4.002 15 N -0.333 5.333 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.218 1.218 22 H -0.205 1.205 23 H -0.217 1.217 24 C 0.040 3.960 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.228 0.772 29 H 0.163 0.837 30 H 0.182 0.818 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.191 0.809 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.525 -10.016 17.422 20.842 hybrid contribution 0.649 0.273 -0.411 0.815 sum -4.875 -9.744 17.011 20.201 Atomic orbital electron populations 1.22124 0.96156 1.01087 1.02084 1.20559 0.92671 0.98202 0.81795 0.88127 1.45820 1.67297 1.13629 1.09573 1.17323 0.76920 0.85785 0.82330 1.90769 1.51565 1.15610 1.85309 1.20486 1.14096 0.94735 0.94163 1.22059 1.05618 0.95206 0.96263 1.21694 1.09926 0.90202 0.93046 1.43587 1.50707 1.08930 1.09496 1.22082 1.02394 1.03914 0.78752 1.21786 1.00867 0.94351 0.89632 1.23311 1.01955 0.97519 0.94714 1.22427 0.92684 0.92126 0.92982 1.45703 1.12475 1.12675 1.62471 1.18933 0.94318 0.88281 1.32906 0.90194 1.24794 0.95418 0.98275 1.01866 1.69851 1.01383 1.34297 1.51026 0.86133 0.77960 0.84394 0.77517 1.21763 1.20470 1.21658 1.22032 0.91167 0.88870 0.93883 0.92794 0.91486 0.93242 0.77233 0.83683 0.81817 0.90749 0.89700 0.89760 0.80933 0.91317 0.93837 0.95007 0.93784 0.95502 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.29 37.16 0.35 -2.19 16 2 C 0.17 3.24 2.43 -67.93 -0.16 3.07 16 3 H 0.10 2.42 7.36 -51.93 -0.38 2.04 16 4 N -0.71 -11.94 5.07 -54.93 -0.28 -12.22 16 5 C 0.59 10.81 7.77 -12.59 -0.10 10.71 16 6 O -0.55 -12.34 16.57 5.26 0.09 -12.25 16 7 C -0.22 -3.36 6.29 -103.35 -0.65 -4.01 16 8 C -0.17 -1.98 10.56 -37.50 -0.40 -2.37 16 9 C -0.02 -0.22 11.34 -16.83 -0.19 -0.41 16 10 N -0.45 -4.44 3.09 -124.53 -0.38 -4.83 16 11 C 0.07 0.37 11.03 59.85 0.66 1.03 16 12 C 0.07 0.88 11.12 -16.84 -0.19 0.69 16 13 C -0.15 -2.92 3.73 -89.97 -0.34 -3.25 16 14 C 0.12 2.60 8.08 -8.51 -0.07 2.53 16 15 N -0.61 -16.10 3.57 -184.62 -0.66 -16.75 16 16 C -0.22 -6.34 10.73 -15.06 -0.16 -6.50 16 17 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -28.53 11.81 55.49 0.66 -27.87 16 20 Si 0.91 23.21 29.56 -169.99 -5.02 18.18 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 C 0.17 4.03 6.77 -8.38 -0.06 3.97 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.08 6.50 -51.92 -0.34 0.74 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.39 5.42 7.73 -40.82 -0.32 5.11 16 29 H 0.15 1.42 7.70 -52.48 -0.40 1.02 16 30 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.36 8.13 -51.93 -0.42 -0.07 16 33 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 34 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.04 0.86 6.43 -51.93 -0.33 0.53 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.69 7.56 -51.93 -0.39 1.30 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -36.68 336.27 -7.87 -44.55 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.94 Total: 3.15 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.40 Total: 2.98 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.67 Total: -61.68 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.68 -7.87 -44.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969493309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.553 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds