Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21624 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.47259 * 120.00030 * 179.97438 * 5 4 2 8 8 C 1.46681 * 126.94612 * 0.02562 * 7 5 4 9 9 C 1.34481 * 106.33596 * 180.02562 * 8 7 5 10 10 N 1.36449 * 108.85919 * 359.97438 * 9 8 7 11 11 C 1.46500 * 124.85599 * 179.97438 * 10 9 8 12 12 C 1.34661 * 110.29229 * 359.73010 * 10 9 8 13 13 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 14 14 C 1.53496 * 114.20179 * 60.00300 * 13 2 1 15 15 N 1.47070 * 87.98352 * 87.52002 * 14 13 2 16 16 C 1.36935 * 136.05550 * 207.07944 * 15 14 13 17 17 H 1.08005 * 120.00172 * 6.50069 * 16 15 14 18 18 C 1.38815 * 119.99990 * 186.49806 * 16 15 14 19 19 N 1.31619 * 119.99663 * 6.42579 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 186.42252 * 18 16 15 21 21 H 1.48495 * 109.47340 * 265.02201 * 20 18 16 22 22 H 1.48498 * 109.46951 * 25.02385 * 20 18 16 23 23 H 1.48498 * 109.46744 * 145.01993 * 20 18 16 24 24 C 1.47064 * 87.88277 * 27.34197 * 15 14 13 25 25 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 26 26 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 27 27 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 29 29 H 1.08003 * 126.83145 * 359.96790 * 8 7 5 30 30 H 1.08004 * 125.57331 * 179.97438 * 9 8 7 31 31 H 1.08991 * 109.47299 * 90.02133 * 11 10 9 32 32 H 1.08993 * 109.46919 * 210.02726 * 11 10 9 33 33 H 1.09000 * 109.46871 * 330.02174 * 11 10 9 34 34 H 1.07998 * 125.80281 * 180.30401 * 12 10 9 35 35 H 1.08996 * 113.41116 * 286.80792 * 13 2 1 36 36 H 1.09004 * 113.46865 * 332.74440 * 14 13 2 37 37 H 1.08993 * 113.51976 * 202.30849 * 14 13 2 38 38 H 0.97005 * 119.99413 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.46743 * 87.44096 * 24 15 14 40 40 H 1.08999 * 113.46191 * 217.87327 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8580 1.1619 2.4117 7 6 2.6372 -0.7126 3.5597 8 6 3.0274 -2.1226 3.6662 9 6 3.4069 -2.3147 4.9420 10 7 3.2808 -1.1383 5.6216 11 6 3.5993 -0.9521 7.0394 12 6 2.8266 -0.1715 4.8015 13 6 2.0401 -0.7213 -1.2492 14 6 1.5899 -0.0847 -2.5714 15 7 2.7724 0.7863 -2.4944 16 6 3.1106 2.0322 -2.9510 17 1 2.3680 2.6506 -3.4334 18 6 4.4080 2.5005 -2.7940 19 7 5.3428 1.7030 -2.3223 20 14 4.8269 4.2623 -3.2520 21 1 5.3584 4.3005 -4.6381 22 1 3.6036 5.0999 -3.1677 23 1 5.8517 4.7872 -2.3142 24 6 3.4341 -0.2723 -1.7170 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2489 -1.6318 1.1527 29 1 3.0120 -2.8599 2.8772 30 1 3.7547 -3.2477 5.3603 31 1 4.6438 -0.6579 7.1415 32 1 2.9602 -0.1738 7.4562 33 1 3.4309 -1.8862 7.5753 34 1 2.6409 0.8558 5.0781 35 1 1.9118 -1.8029 -1.2074 36 1 0.6467 0.4561 -2.4938 37 1 1.6124 -0.7736 -3.4157 38 1 6.2494 2.0301 -2.2129 39 1 3.9433 -1.0113 -2.3356 40 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969493309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = 47.337033 kcal Electronic energy + Delta-G solvation = -21388.338615 eV Core-core repulsion = 18205.065712 eV Total energy + Delta-G solvation = -3183.272903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09092 -40.77714 -39.49756 -35.97529 -34.23021 -33.66238 -31.54576 -30.01977 -29.47466 -27.51707 -26.36444 -25.57645 -24.10205 -22.66231 -20.98426 -20.96064 -20.02791 -18.82375 -18.48154 -17.37214 -16.91047 -16.66967 -16.28363 -15.73277 -15.68022 -15.36504 -14.91071 -14.60610 -14.40321 -14.27188 -13.86710 -13.47834 -13.30562 -13.27040 -13.16801 -13.00408 -12.89171 -12.80115 -12.51483 -12.34477 -12.02319 -11.76042 -11.48091 -11.07216 -10.87871 -10.77098 -10.01663 -9.45791 -9.24530 -8.88956 -7.92544 -5.22292 0.82205 1.40904 1.44492 1.53014 1.58126 1.96123 2.46943 2.50777 2.68284 3.31666 3.53957 3.66678 3.93396 4.01970 4.06431 4.11913 4.36730 4.45312 4.48510 4.56478 4.64451 4.71569 4.75896 4.78691 4.83958 4.89619 5.03288 5.05783 5.14239 5.24075 5.29950 5.33641 5.51492 5.58744 5.76152 5.81698 5.94323 6.10431 6.40521 6.80566 6.91284 7.47411 7.61259 8.63560 9.26849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.004332 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.923545 B = 6462.369562 C = 7137.213841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.176 3.824 3 H 0.038 0.962 4 N -0.703 5.703 5 C 0.580 3.420 6 O -0.608 6.608 7 C -0.264 4.264 8 C -0.183 4.183 9 C -0.007 4.007 10 N -0.444 5.444 11 C 0.061 3.939 12 C 0.060 3.940 13 C -0.119 4.119 14 C 0.125 3.875 15 N -0.641 5.641 16 C -0.226 4.226 17 H 0.084 0.916 18 C -0.071 4.071 19 N -0.954 5.954 20 Si 0.974 3.026 21 H -0.281 1.281 22 H -0.268 1.268 23 H -0.297 1.297 24 C 0.162 3.838 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.162 0.838 30 H 0.206 0.794 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.172 0.828 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.246 0.754 39 H 0.022 0.978 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -13.482 18.278 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.071 3.929 3 H 0.057 0.943 4 N -0.353 5.353 5 C 0.370 3.630 6 O -0.491 6.491 7 C -0.275 4.275 8 C -0.207 4.207 9 C -0.134 4.134 10 N -0.118 5.118 11 C -0.078 4.078 12 C -0.077 4.077 13 C -0.138 4.138 14 C 0.000 4.000 15 N -0.368 5.368 16 C -0.354 4.354 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.803 3.197 21 H -0.208 1.208 22 H -0.193 1.193 23 H -0.224 1.224 24 C 0.036 3.964 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.248 0.752 29 H 0.180 0.820 30 H 0.223 0.777 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.189 0.811 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.506 -12.374 18.596 23.265 hybrid contribution 0.938 0.931 -0.679 1.486 sum -5.569 -11.443 17.917 21.977 Atomic orbital electron populations 1.22008 0.93542 1.03164 1.01547 1.20305 0.94537 0.95253 0.82766 0.94318 1.45656 1.66860 1.14250 1.08580 1.17951 0.76087 0.85335 0.83578 1.90722 1.54162 1.18011 1.86248 1.20416 1.16808 0.96731 0.93504 1.22311 1.06458 0.93865 0.98034 1.22342 1.07576 0.91208 0.92294 1.43917 1.48821 1.08185 1.10900 1.22443 1.03223 1.05961 0.76218 1.21850 1.00976 0.95057 0.89846 1.23081 0.97013 1.00079 0.93647 1.22636 0.91307 0.91578 0.94482 1.46047 1.14895 1.12930 1.62888 1.19346 0.94451 0.90000 1.31623 0.89810 1.25643 0.95572 1.02307 1.02814 1.70035 1.01329 1.36003 1.52980 0.85113 0.77663 0.79789 0.77174 1.20797 1.19277 1.22407 1.22014 0.93345 0.88410 0.92593 0.94097 0.91313 0.89700 0.75235 0.82021 0.77709 0.89763 0.88747 0.86931 0.81102 0.86297 0.92477 0.92802 0.94530 0.96010 0.96361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.29 71.98 0.67 -3.84 16 2 C 0.18 6.69 2.43 44.99 0.11 6.80 16 3 H 0.04 1.97 7.36 -2.39 -0.02 1.96 16 4 N -0.70 -23.70 5.07 -445.95 -2.26 -25.96 16 5 C 0.58 22.24 7.77 86.61 0.67 22.91 16 6 O -0.61 -29.03 16.57 -4.11 -0.07 -29.10 16 7 C -0.26 -7.98 6.29 -19.04 -0.12 -8.10 16 8 C -0.18 -4.01 10.56 23.62 0.25 -3.76 16 9 C -0.01 -0.12 11.34 83.11 0.94 0.82 16 10 N -0.44 -7.74 3.09 -547.91 -1.69 -9.43 16 11 C 0.06 0.46 11.03 127.77 1.41 1.87 16 12 C 0.06 1.54 11.12 83.92 0.93 2.47 16 13 C -0.12 -4.31 3.73 -10.37 -0.04 -4.34 16 14 C 0.13 5.03 8.08 83.17 0.67 5.70 16 15 N -0.64 -34.54 3.57 -738.00 -2.63 -37.17 16 16 C -0.23 -13.50 10.73 84.03 0.90 -12.59 16 17 H 0.08 4.78 7.84 -2.91 -0.02 4.75 16 18 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.95 -61.70 11.81 21.65 0.26 -61.45 16 20 Si 0.97 49.07 29.56 68.60 2.03 51.10 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 24 C 0.16 8.04 6.77 83.26 0.56 8.60 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 2.11 6.50 -2.38 -0.02 2.09 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.41 10.80 7.73 -92.71 -0.72 10.08 16 29 H 0.16 2.78 7.70 -2.91 -0.02 2.76 16 30 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.56 8.13 -2.39 -0.02 0.54 16 33 H 0.11 0.27 8.13 -2.39 -0.02 0.25 16 34 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.06 2.15 6.43 -2.38 -0.02 2.13 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 38 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.02 1.04 7.56 -2.39 -0.02 1.02 16 Total: -1.00 -85.96 336.27 3.38 -82.58 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.32 Total: 16.73 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 7.43 Total: 12.70 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -6.33 Total: -134.00 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.07 Total: -29.10 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -85.96 3.38 -82.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969493309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.919 kcal (2) G-P(sol) polarization free energy of solvation -85.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds