Wall clock time and date at job start Mon Mar 30 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.99729 * 2 1 4 4 C 1.54335 * 109.98880 * 238.96440 * 2 1 3 5 5 H 1.08992 * 110.66730 * 337.04715 * 4 2 1 6 6 N 1.46503 * 110.84854 * 100.20095 * 4 2 1 7 7 C 1.36939 * 119.99941 * 200.14694 * 6 4 2 8 8 H 1.08007 * 119.99745 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00270 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00356 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47112 * 60.00360 * 11 9 7 13 13 H 1.48497 * 109.47482 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47200 * 300.00431 * 11 9 7 15 15 C 1.55154 * 103.02002 * 218.66112 * 4 2 1 16 16 C 1.54909 * 101.58219 * 35.30969 * 15 4 2 17 17 N 1.47024 * 109.88612 * 121.09774 * 2 1 3 18 18 C 1.34780 * 125.64369 * 298.39691 * 17 2 1 19 19 O 1.21687 * 120.00379 * 0.80217 * 18 17 2 20 20 C 1.46682 * 119.99621 * 180.80257 * 18 17 2 21 21 C 1.37876 * 126.23188 * 351.70458 * 20 18 17 22 22 C 1.39836 * 107.08293 * 180.02562 * 21 20 18 23 23 C 1.35448 * 107.86354 * 359.97438 * 22 21 20 24 24 N 1.35527 * 108.87509 * 0.02562 * 23 22 21 25 25 C 1.46506 * 125.67773 * 179.73379 * 24 23 22 26 26 H 1.09001 * 109.46672 * 300.35643 * 1 2 3 27 27 H 1.09001 * 109.47321 * 60.35283 * 1 2 3 28 28 H 1.08993 * 109.46985 * 180.35649 * 1 2 3 29 29 H 0.97000 * 120.00479 * 20.14019 * 6 4 2 30 30 H 0.97008 * 119.99802 * 179.97438 * 10 9 7 31 31 H 1.09000 * 111.00881 * 277.23433 * 15 4 2 32 32 H 1.08997 * 111.00556 * 153.37967 * 15 4 2 33 33 H 1.09000 * 110.37249 * 204.15300 * 16 15 4 34 34 H 1.08998 * 110.46292 * 81.86945 * 16 15 4 35 35 H 1.07995 * 126.45523 * 0.02562 * 21 20 18 36 36 H 1.08001 * 126.06402 * 180.02562 * 22 21 20 37 37 H 1.07999 * 125.56231 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47189 * 95.59147 * 25 24 23 39 39 H 1.09007 * 109.47009 * 215.58962 * 25 24 23 40 40 H 1.09002 * 109.46883 * 335.58582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3066 -1.4404 -1.6225 6 7 2.4637 0.1969 -2.2863 7 6 2.5654 -0.2211 -3.5863 8 1 2.3466 -1.2474 -3.8423 9 6 2.9497 0.6740 -4.5752 10 7 3.2167 1.9245 -4.2632 11 14 3.0891 0.1037 -6.3485 12 1 1.7707 -0.3987 -6.8120 13 1 3.5138 1.2417 -7.2026 14 1 4.0941 -0.9858 -6.4405 15 6 3.2864 -1.5183 -0.6916 16 6 2.8100 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.1288 0.6157 2.7191 20 6 2.3832 -1.1576 3.5553 21 6 3.0308 -2.3680 3.4264 22 6 3.4136 -2.7678 4.7106 23 6 3.0028 -1.8157 5.5819 24 7 2.3751 -0.8319 4.8926 25 6 1.7815 0.3744 5.4747 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5083 -0.8931 28 1 -0.3633 -1.0276 0.0064 29 1 2.6604 1.1185 -2.0564 30 1 3.4856 2.5500 -4.9542 31 1 4.1670 -0.8768 -0.6580 32 1 3.4807 -2.4155 -1.2792 33 1 3.6656 -2.0412 1.3931 34 1 2.1807 -2.7721 0.7132 35 1 3.2089 -2.9058 2.5070 36 1 3.9435 -3.6745 4.9626 37 1 3.1505 -1.8373 6.6515 38 1 2.4968 1.1950 5.4179 39 1 0.8803 0.6391 4.9216 40 1 1.5259 0.1866 6.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986002058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:41 Heat of formation + Delta-G solvation = 45.030311 kcal Electronic energy + Delta-G solvation = -21780.264070 eV Core-core repulsion = 18596.891140 eV Total energy + Delta-G solvation = -3183.372930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44704 -39.50945 -37.24567 -34.26735 -32.98364 -31.71474 -30.97377 -29.64853 -28.44607 -26.64162 -25.23255 -23.51809 -23.13412 -21.07608 -20.73420 -19.79304 -18.99092 -17.24399 -16.98146 -16.26344 -15.75356 -15.37860 -14.95465 -14.49323 -13.87354 -13.77956 -13.56545 -13.39598 -13.27475 -12.95508 -12.74851 -12.39815 -12.38856 -12.13393 -12.11825 -11.81217 -11.32408 -11.04783 -11.00528 -10.76243 -10.57230 -10.26081 -10.01717 -9.76930 -9.63078 -8.93678 -8.80298 -8.48832 -8.19130 -7.02682 -5.81091 -3.11595 1.51274 2.56727 2.69940 3.35488 3.42075 3.46923 3.47759 3.48754 4.55144 4.60826 4.70228 4.88430 5.05154 5.13736 5.23412 5.29262 5.35177 5.41597 5.50123 5.53959 5.63670 5.67221 5.79448 5.93742 6.00291 6.09335 6.10578 6.16586 6.32155 6.46728 6.59298 6.60696 6.65544 6.82193 6.92543 6.94634 7.13944 7.65636 7.74565 8.33435 8.36695 9.47643 10.02131 10.36936 11.41063 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035094 B = 0.003902 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.656044 B = 7174.978652 C = 7576.295617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 H 0.078 0.922 4 C 0.176 3.824 5 H 0.065 0.935 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.084 3.916 17 N -0.594 5.594 18 C 0.599 3.401 19 O -0.556 6.556 20 C -0.041 4.041 21 C -0.157 4.157 22 C -0.210 4.210 23 C 0.007 3.993 24 N -0.413 5.413 25 C 0.067 3.933 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.386 0.614 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -8.660 18.819 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.096 0.904 4 C 0.064 3.936 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.038 4.038 17 N -0.326 5.326 18 C 0.389 3.611 19 O -0.437 6.437 20 C -0.155 4.155 21 C -0.183 4.183 22 C -0.235 4.235 23 C -0.128 4.128 24 N -0.086 5.086 25 C -0.074 4.074 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.220 0.780 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.579 -7.815 18.953 20.562 hybrid contribution 0.322 -0.029 -0.779 0.843 sum -1.257 -7.844 18.174 19.834 Atomic orbital electron populations 1.22051 0.94776 1.01689 1.02734 1.21922 0.94449 0.96863 0.84036 0.90360 1.21248 0.93612 0.91605 0.87088 0.91683 1.42335 1.80768 1.09287 1.03141 1.19160 1.39260 0.95235 0.83834 0.91011 1.24759 1.02056 0.95638 0.98150 1.69660 1.52312 1.03125 1.32711 0.86253 0.77827 0.77283 0.84701 1.21188 1.21701 1.21189 1.23595 1.01357 1.01790 0.93031 1.22913 0.95349 0.88245 0.97333 1.48143 1.51727 1.28466 1.04260 1.16566 0.80205 0.83442 0.80929 1.90745 1.41064 1.28510 1.83341 1.20084 1.11931 0.99303 0.84180 1.22063 1.01721 0.95483 0.99025 1.20857 1.08580 1.01269 0.92752 1.21984 1.02340 0.90388 0.98102 1.43846 1.41771 1.17560 1.05443 1.22244 1.00808 0.85135 0.99199 0.91961 0.91071 0.93027 0.78001 0.93331 0.90557 0.90438 0.89622 0.91332 0.82338 0.84135 0.81681 0.90716 0.87958 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.11 37.16 0.34 -2.28 16 2 C 0.13 2.36 3.22 -66.94 -0.22 2.14 16 3 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 4 C 0.18 3.38 3.12 -66.09 -0.21 3.17 16 5 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 6 N -0.71 -17.34 5.25 -51.65 -0.27 -17.61 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 11 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C -0.16 -2.57 6.77 -24.58 -0.17 -2.74 16 16 C 0.08 1.15 5.25 -2.53 -0.01 1.14 16 17 N -0.59 -9.66 3.06 -164.53 -0.50 -10.16 16 18 C 0.60 10.10 7.60 -12.85 -0.10 10.00 16 19 O -0.56 -10.55 13.78 5.20 0.07 -10.48 16 20 C -0.04 -0.60 6.84 -81.98 -0.56 -1.16 16 21 C -0.16 -1.95 9.16 -39.12 -0.36 -2.31 16 22 C -0.21 -2.24 10.81 -39.98 -0.43 -2.67 16 23 C 0.01 0.07 11.37 -16.92 -0.19 -0.12 16 24 N -0.41 -5.10 3.16 -120.23 -0.38 -5.48 16 25 C 0.07 0.68 10.53 59.85 0.63 1.31 16 26 H 0.06 1.09 6.85 -51.93 -0.36 0.74 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.39 10.12 7.51 -40.82 -0.31 9.81 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.05 5.30 -51.93 -0.28 0.77 16 34 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 35 H 0.16 1.72 4.71 -52.49 -0.25 1.48 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.23 6.48 -51.92 -0.34 0.89 16 40 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -31.82 323.91 -7.69 -39.52 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.67 Total: 9.95 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.52 Total: -0.55 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.43 Total: -60.17 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.82 -7.69 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986002058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.545 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds