Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.99729 * 2 1 4 4 C 1.54335 * 109.98880 * 238.96440 * 2 1 3 5 5 H 1.08992 * 110.66730 * 337.04715 * 4 2 1 6 6 N 1.46503 * 110.84854 * 100.20095 * 4 2 1 7 7 C 1.36939 * 119.99941 * 200.14694 * 6 4 2 8 8 H 1.08007 * 119.99745 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00270 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00356 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47112 * 60.00360 * 11 9 7 13 13 H 1.48497 * 109.47482 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47200 * 300.00431 * 11 9 7 15 15 C 1.55154 * 103.02002 * 218.66112 * 4 2 1 16 16 C 1.54909 * 101.58219 * 35.30969 * 15 4 2 17 17 N 1.47024 * 109.88612 * 121.09774 * 2 1 3 18 18 C 1.34780 * 125.64369 * 298.39691 * 17 2 1 19 19 O 1.21687 * 120.00379 * 0.80217 * 18 17 2 20 20 C 1.46682 * 119.99621 * 180.80257 * 18 17 2 21 21 C 1.37876 * 126.23188 * 351.70458 * 20 18 17 22 22 C 1.39836 * 107.08293 * 180.02562 * 21 20 18 23 23 C 1.35448 * 107.86354 * 359.97438 * 22 21 20 24 24 N 1.35527 * 108.87509 * 0.02562 * 23 22 21 25 25 C 1.46506 * 125.67773 * 179.73379 * 24 23 22 26 26 H 1.09001 * 109.46672 * 300.35643 * 1 2 3 27 27 H 1.09001 * 109.47321 * 60.35283 * 1 2 3 28 28 H 1.08993 * 109.46985 * 180.35649 * 1 2 3 29 29 H 0.97000 * 120.00479 * 20.14019 * 6 4 2 30 30 H 0.97008 * 119.99802 * 179.97438 * 10 9 7 31 31 H 1.09000 * 111.00881 * 277.23433 * 15 4 2 32 32 H 1.08997 * 111.00556 * 153.37967 * 15 4 2 33 33 H 1.09000 * 110.37249 * 204.15300 * 16 15 4 34 34 H 1.08998 * 110.46292 * 81.86945 * 16 15 4 35 35 H 1.07995 * 126.45523 * 0.02562 * 21 20 18 36 36 H 1.08001 * 126.06402 * 180.02562 * 22 21 20 37 37 H 1.07999 * 125.56231 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47189 * 95.59147 * 25 24 23 39 39 H 1.09007 * 109.47009 * 215.58962 * 25 24 23 40 40 H 1.09002 * 109.46883 * 335.58582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3066 -1.4404 -1.6225 6 7 2.4637 0.1969 -2.2863 7 6 2.5654 -0.2211 -3.5863 8 1 2.3466 -1.2474 -3.8423 9 6 2.9497 0.6740 -4.5752 10 7 3.2167 1.9245 -4.2632 11 14 3.0891 0.1037 -6.3485 12 1 1.7707 -0.3987 -6.8120 13 1 3.5138 1.2417 -7.2026 14 1 4.0941 -0.9858 -6.4405 15 6 3.2864 -1.5183 -0.6916 16 6 2.8100 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3621 2.4657 19 8 1.1288 0.6157 2.7191 20 6 2.3832 -1.1576 3.5553 21 6 3.0308 -2.3680 3.4264 22 6 3.4136 -2.7678 4.7106 23 6 3.0028 -1.8157 5.5819 24 7 2.3751 -0.8319 4.8926 25 6 1.7815 0.3744 5.4747 26 1 -0.3633 0.5194 0.8868 27 1 -0.3634 0.5083 -0.8931 28 1 -0.3633 -1.0276 0.0064 29 1 2.6604 1.1185 -2.0564 30 1 3.4856 2.5500 -4.9542 31 1 4.1670 -0.8768 -0.6580 32 1 3.4807 -2.4155 -1.2792 33 1 3.6656 -2.0412 1.3931 34 1 2.1807 -2.7721 0.7132 35 1 3.2089 -2.9058 2.5070 36 1 3.9435 -3.6745 4.9626 37 1 3.1505 -1.8373 6.6515 38 1 2.4968 1.1950 5.4179 39 1 0.8803 0.6391 4.9216 40 1 1.5259 0.1866 6.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986002058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = 24.762372 kcal Electronic energy + Delta-G solvation = -21781.142954 eV Core-core repulsion = 18596.891140 eV Total energy + Delta-G solvation = -3184.251813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39312 -40.77425 -38.63673 -35.99799 -34.07304 -33.20942 -32.41170 -31.14225 -29.62594 -27.51188 -26.83673 -24.95189 -24.66861 -22.31362 -21.77618 -21.10985 -20.08120 -19.15625 -18.04696 -17.63913 -16.88177 -16.59879 -16.38693 -15.85582 -15.34559 -15.31036 -14.85971 -14.63740 -14.44135 -14.26989 -13.95410 -13.64500 -13.41794 -13.29776 -13.15768 -13.04451 -12.92653 -12.77028 -12.58317 -12.27638 -12.19004 -12.06471 -11.69262 -11.49934 -10.99563 -10.85047 -9.80106 -9.63231 -9.14113 -9.01463 -7.92616 -5.22921 0.49660 1.50267 1.53502 1.56510 1.59755 1.86554 2.28370 2.35422 2.59233 3.36954 3.48636 3.73211 3.81364 3.97879 4.03461 4.16128 4.22010 4.32582 4.35842 4.40008 4.44374 4.55477 4.57480 4.64371 4.71100 4.75794 4.91049 5.01730 5.18385 5.19946 5.22670 5.27626 5.35253 5.45995 5.55921 5.88236 6.02131 6.27257 6.35775 6.50739 7.08344 7.33799 8.05281 8.29599 9.30833 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035094 B = 0.003902 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.656044 B = 7174.978652 C = 7576.295617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.137 3.863 3 H 0.045 0.955 4 C 0.171 3.829 5 H 0.073 0.927 6 N -0.729 5.729 7 C -0.238 4.238 8 H 0.085 0.915 9 C -0.075 4.075 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.277 1.277 13 H -0.301 1.301 14 H -0.275 1.275 15 C -0.147 4.147 16 C 0.093 3.907 17 N -0.597 5.597 18 C 0.592 3.408 19 O -0.591 6.591 20 C -0.087 4.087 21 C -0.150 4.150 22 C -0.221 4.221 23 C 0.024 3.976 24 N -0.423 5.423 25 C 0.066 3.934 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.370 0.630 30 H 0.250 0.750 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.206 0.794 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -11.727 20.547 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.063 0.937 4 C 0.062 3.938 5 H 0.091 0.909 6 N -0.368 5.368 7 C -0.369 4.369 8 H 0.102 0.898 9 C -0.267 4.267 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.203 1.203 13 H -0.227 1.227 14 H -0.201 1.201 15 C -0.188 4.188 16 C -0.029 4.029 17 N -0.329 5.329 18 C 0.384 3.616 19 O -0.474 6.474 20 C -0.200 4.200 21 C -0.176 4.176 22 C -0.244 4.244 23 C -0.111 4.111 24 N -0.096 5.096 25 C -0.074 4.074 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.084 -10.952 20.705 23.449 hybrid contribution 0.166 0.870 -1.149 1.450 sum -0.919 -10.082 19.556 22.022 Atomic orbital electron populations 1.21936 0.94033 1.02461 1.01731 1.21635 0.94954 0.95348 0.84803 0.93654 1.21430 0.95007 0.91070 0.86325 0.90948 1.42507 1.81158 1.09454 1.03723 1.19600 1.37008 0.95549 0.84782 0.89756 1.25579 1.03088 0.95824 1.02225 1.69837 1.54572 1.04394 1.33480 0.85199 0.78114 0.76562 0.79790 1.20313 1.22737 1.20065 1.23416 0.98949 1.01438 0.95011 1.23047 0.96275 0.88037 0.95502 1.48152 1.52016 1.28979 1.03734 1.17043 0.79781 0.83294 0.81481 1.90717 1.42702 1.30140 1.83856 1.19893 1.14917 1.00536 0.84614 1.22335 1.00278 0.94464 1.00535 1.21260 1.08783 1.02442 0.91902 1.22749 0.99682 0.88841 0.99872 1.44104 1.42078 1.18455 1.04975 1.22306 0.99559 0.84813 1.00770 0.92929 0.92036 0.91258 0.79779 0.94132 0.92664 0.88787 0.87592 0.88492 0.81129 0.81407 0.77722 0.90907 0.90579 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.11 71.98 0.66 -4.31 16 2 C 0.14 5.07 3.22 45.35 0.15 5.22 16 3 H 0.05 1.97 7.69 -2.38 -0.02 1.95 16 4 C 0.17 6.56 3.12 46.18 0.14 6.70 16 5 H 0.07 2.68 7.83 -2.39 -0.02 2.66 16 6 N -0.73 -36.15 5.25 -317.32 -1.67 -37.82 16 7 C -0.24 -12.74 9.98 84.03 0.84 -11.91 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 10 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 11 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C -0.15 -4.67 6.77 31.99 0.22 -4.45 16 16 C 0.09 2.35 5.25 86.86 0.46 2.80 16 17 N -0.60 -19.28 3.06 -792.68 -2.43 -21.70 16 18 C 0.59 20.11 7.60 86.45 0.66 20.77 16 19 O -0.59 -23.37 13.78 -4.31 -0.06 -23.43 16 20 C -0.09 -2.41 6.84 40.35 0.28 -2.13 16 21 C -0.15 -3.28 9.16 22.57 0.21 -3.07 16 22 C -0.22 -3.80 10.81 22.01 0.24 -3.56 16 23 C 0.02 0.39 11.37 83.48 0.95 1.34 16 24 N -0.42 -9.59 3.16 -534.30 -1.69 -11.28 16 25 C 0.07 1.26 10.53 127.77 1.35 2.60 16 26 H 0.05 1.91 6.85 -2.39 -0.02 1.90 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.37 20.38 7.51 -92.71 -0.70 19.69 16 30 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.11 2.30 5.30 -2.39 -0.01 2.29 16 34 H 0.10 1.97 8.01 -2.39 -0.02 1.95 16 35 H 0.17 3.10 4.71 -2.91 -0.01 3.09 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.87 6.48 -2.38 -0.02 1.85 16 40 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -71.44 323.91 3.41 -68.03 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.35 Total: 31.94 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.60 Total: 6.22 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.50 Total: -130.07 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.44 3.41 -68.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986002058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.789 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds