Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.00200 * 2 1 4 4 C 1.54318 * 109.77453 * 121.15631 * 2 1 3 5 5 H 1.08991 * 110.92319 * 23.46442 * 4 2 1 6 6 N 1.46511 * 110.58628 * 260.14623 * 4 2 1 7 7 C 1.36934 * 119.99856 * 160.19435 * 6 4 2 8 8 H 1.08007 * 119.99900 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00195 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99599 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00160 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46778 * 89.99921 * 11 9 7 13 13 H 1.48497 * 109.47020 * 209.99782 * 11 9 7 14 14 H 1.48501 * 109.47058 * 330.00245 * 11 9 7 15 15 C 1.55149 * 102.86626 * 141.88801 * 4 2 1 16 16 C 1.54909 * 101.57933 * 324.30109 * 15 4 2 17 17 N 1.47027 * 109.88536 * 238.90149 * 2 1 3 18 18 C 1.34775 * 125.64357 * 61.67721 * 17 2 1 19 19 O 1.21695 * 120.00490 * 358.75399 * 18 17 2 20 20 C 1.46684 * 119.99664 * 179.02570 * 18 17 2 21 21 C 1.37869 * 126.22916 * 7.86847 * 20 18 17 22 22 C 1.39845 * 107.08286 * 179.84595 * 21 20 18 23 23 C 1.35451 * 107.86071 * 0.41569 * 22 21 20 24 24 N 1.35534 * 108.87437 * 359.74251 * 23 22 21 25 25 C 1.46499 * 125.67706 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47091 * 179.64059 * 1 2 3 27 27 H 1.08996 * 109.47193 * 299.64901 * 1 2 3 28 28 H 1.09001 * 109.47061 * 59.64346 * 1 2 3 29 29 H 0.96995 * 119.99719 * 340.18668 * 6 4 2 30 30 H 0.97004 * 119.99869 * 180.02562 * 10 9 7 31 31 H 1.09007 * 111.00280 * 206.22881 * 15 4 2 32 32 H 1.08998 * 111.04118 * 82.38860 * 15 4 2 33 33 H 1.09001 * 110.36558 * 278.16829 * 16 15 4 34 34 H 1.09002 * 110.36654 * 155.85370 * 16 15 4 35 35 H 1.08003 * 126.46306 * 359.95555 * 21 20 18 36 36 H 1.07997 * 126.06596 * 180.15470 * 22 21 20 37 37 H 1.08001 * 125.56161 * 179.71968 * 23 22 21 38 38 H 1.08997 * 109.47161 * 274.65292 * 25 24 23 39 39 H 1.08994 * 109.47333 * 34.65537 * 25 24 23 40 40 H 1.09006 * 109.47186 * 154.65757 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2427 5 1 1.3049 -1.4512 1.6168 6 7 2.4472 0.1954 2.2888 7 6 2.5495 -0.2238 3.5884 8 1 2.3385 -1.2521 3.8423 9 6 2.9244 0.6730 4.5794 10 7 3.1811 1.9262 4.2699 11 14 3.0633 0.1014 6.3524 12 1 4.4445 -0.3787 6.6108 13 1 2.7540 1.2329 7.2629 14 1 2.1018 -1.0045 6.5927 15 6 3.2888 -1.5101 0.6934 16 6 2.8191 -1.8763 -0.7366 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1244 0.6126 -2.7192 20 6 2.3872 -1.1548 -3.5552 21 6 3.0440 -2.3601 -3.4256 22 6 3.4238 -2.7612 -4.7103 23 6 3.0098 -1.8105 -5.5817 24 7 2.3786 -0.8289 -4.8925 25 6 1.7862 0.3782 -5.4739 26 1 -0.3633 -1.0276 -0.0064 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5194 -0.8868 29 1 2.6364 1.1189 2.0606 30 1 3.4434 2.5528 4.9624 31 1 3.4896 -2.4065 1.2802 32 1 4.1642 -0.8614 0.6629 33 1 2.1971 -2.7712 -0.7141 34 1 3.6776 -2.0265 -1.3911 35 1 3.2287 -2.8947 -2.5055 36 1 3.9566 -3.6662 -4.9623 37 1 3.1588 -1.8310 -6.6512 38 1 2.5537 1.1450 -5.5794 39 1 1.3703 0.1432 -6.4536 40 1 0.9938 0.7448 -4.8213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986002070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = 25.160493 kcal Electronic energy + Delta-G solvation = -21783.561287 eV Core-core repulsion = 18599.326738 eV Total energy + Delta-G solvation = -3184.234550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39649 -40.77710 -38.64654 -36.00171 -34.07335 -33.20580 -32.41091 -31.14341 -29.62620 -27.51031 -26.83116 -24.94982 -24.66669 -22.31242 -21.78056 -21.11371 -20.08920 -19.15715 -18.03463 -17.64396 -16.88099 -16.59194 -16.38572 -15.85060 -15.35257 -15.31325 -14.87030 -14.66430 -14.44881 -14.27243 -13.96222 -13.65196 -13.42801 -13.29147 -13.13963 -13.03107 -12.90750 -12.82019 -12.57502 -12.26569 -12.14179 -12.06994 -11.69593 -11.49746 -10.98136 -10.85033 -9.80071 -9.63270 -9.14244 -9.01471 -7.92824 -5.22971 0.49389 1.50288 1.52102 1.56515 1.60701 1.86419 2.28413 2.35451 2.59105 3.36910 3.48651 3.72927 3.82196 3.98469 4.03400 4.15856 4.22005 4.32815 4.36373 4.40104 4.44407 4.55204 4.57516 4.64448 4.71563 4.77452 4.91357 5.01965 5.18943 5.20329 5.22668 5.27716 5.35313 5.45835 5.56291 5.88242 6.02455 6.27241 6.35600 6.50799 7.08024 7.33814 8.05204 8.29514 9.30862 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035169 B = 0.003902 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.971410 B = 7174.628197 C = 7578.427992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.137 3.863 3 H 0.046 0.954 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.729 5.729 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.075 4.075 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.287 1.287 13 H -0.301 1.301 14 H -0.266 1.266 15 C -0.148 4.148 16 C 0.093 3.907 17 N -0.597 5.597 18 C 0.592 3.408 19 O -0.590 6.590 20 C -0.087 4.087 21 C -0.150 4.150 22 C -0.220 4.220 23 C 0.023 3.977 24 N -0.423 5.423 25 C 0.059 3.941 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.371 0.629 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.205 0.795 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -11.694 -20.498 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 H 0.064 0.936 4 C 0.062 3.938 5 H 0.091 0.909 6 N -0.368 5.368 7 C -0.368 4.368 8 H 0.103 0.897 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.214 1.214 13 H -0.228 1.228 14 H -0.190 1.190 15 C -0.189 4.189 16 C -0.029 4.029 17 N -0.328 5.328 18 C 0.384 3.616 19 O -0.474 6.474 20 C -0.199 4.199 21 C -0.176 4.176 22 C -0.243 4.243 23 C -0.112 4.112 24 N -0.096 5.096 25 C -0.081 4.081 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.222 0.778 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.029 -10.933 -20.657 23.395 hybrid contribution 0.197 0.877 1.129 1.443 sum -0.833 -10.057 -19.528 21.981 Atomic orbital electron populations 1.21937 0.94060 1.02453 1.01726 1.21637 0.94985 0.95324 0.84790 0.93595 1.21440 0.95045 0.91085 0.86242 0.90866 1.42519 1.81549 1.09103 1.03677 1.19636 1.37040 0.95350 0.84756 0.89735 1.25576 1.03184 0.95795 1.02198 1.69840 1.54939 1.04161 1.33357 0.85132 0.77873 0.76825 0.79871 1.21419 1.22784 1.19037 1.23427 0.98955 1.01490 0.95009 1.23050 0.96123 0.88215 0.95475 1.48151 1.51719 1.29235 1.03733 1.17043 0.79833 0.83197 0.81484 1.90700 1.42561 1.30408 1.83729 1.19886 1.14734 1.00690 0.84599 1.22341 1.00181 0.94594 1.00524 1.21261 1.08755 1.02446 0.91886 1.22735 0.99681 0.88945 0.99867 1.44101 1.42009 1.18475 1.04988 1.22393 0.99938 0.84969 1.00821 0.91276 0.92047 0.92931 0.79757 0.94143 0.88781 0.92667 0.88459 0.87596 0.81103 0.81414 0.77806 0.90348 0.86716 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.10 71.98 0.66 -4.31 16 2 C 0.14 5.05 3.21 45.34 0.15 5.20 16 3 H 0.05 1.98 7.68 -2.39 -0.02 1.97 16 4 C 0.17 6.54 3.11 46.17 0.14 6.68 16 5 H 0.07 2.70 7.84 -2.39 -0.02 2.68 16 6 N -0.73 -36.05 5.25 -317.33 -1.67 -37.71 16 7 C -0.24 -12.63 9.98 84.03 0.84 -11.79 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 10 N -0.97 -59.51 13.06 21.65 0.28 -59.22 16 11 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 C -0.15 -4.67 6.76 31.98 0.22 -4.45 16 16 C 0.09 2.34 5.24 86.86 0.46 2.79 16 17 N -0.60 -19.18 3.07 -792.73 -2.43 -21.61 16 18 C 0.59 20.05 7.61 86.45 0.66 20.71 16 19 O -0.59 -23.25 13.57 -4.33 -0.06 -23.31 16 20 C -0.09 -2.39 6.84 40.35 0.28 -2.12 16 21 C -0.15 -3.28 9.17 22.57 0.21 -3.08 16 22 C -0.22 -3.80 10.81 22.01 0.24 -3.56 16 23 C 0.02 0.38 11.38 83.48 0.95 1.33 16 24 N -0.42 -9.60 3.16 -534.32 -1.69 -11.29 16 25 C 0.06 1.13 10.80 127.77 1.38 2.51 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.91 6.84 -2.39 -0.02 1.89 16 29 H 0.37 20.34 7.50 -92.71 -0.70 19.64 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 1.96 8.01 -2.39 -0.02 1.94 16 34 H 0.11 2.29 5.31 -2.39 -0.01 2.27 16 35 H 0.17 3.10 4.70 -2.91 -0.01 3.08 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 2.06 5.94 -2.38 -0.01 2.05 16 Total: -1.00 -71.16 323.41 3.45 -67.71 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.36 Total: 32.01 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.63 Total: 6.12 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.50 Total: -129.84 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.16 3.45 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986002070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.872 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds