Wall clock time and date at job start Mon Mar 30 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.00025 * 2 1 4 4 C 1.54329 * 109.88274 * 121.09882 * 2 1 3 5 5 H 1.08998 * 110.72117 * 23.24617 * 4 2 1 6 6 N 1.46500 * 110.71710 * 259.97150 * 4 2 1 7 7 C 1.36944 * 119.99513 * 154.99981 * 6 4 2 8 8 H 1.08000 * 119.99844 * 359.97438 * 7 6 4 9 9 C 1.38808 * 119.99721 * 180.02562 * 7 6 4 10 10 N 1.31626 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00066 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47097 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47415 * 119.99916 * 11 9 7 14 14 H 1.48498 * 109.47071 * 239.99753 * 11 9 7 15 15 C 1.55157 * 102.94386 * 141.60863 * 4 2 1 16 16 C 1.55132 * 101.48193 * 324.33207 * 15 4 2 17 17 N 1.47028 * 109.88240 * 238.90380 * 2 1 3 18 18 C 1.34780 * 125.64601 * 61.60649 * 17 2 1 19 19 O 1.21632 * 119.99716 * 5.58343 * 18 17 2 20 20 C 1.47259 * 119.99989 * 185.58421 * 18 17 2 21 21 C 1.46694 * 126.94212 * 7.00730 * 20 18 17 22 22 C 1.34482 * 106.33225 * 180.24001 * 21 20 18 23 23 N 1.36451 * 108.85732 * 359.77438 * 22 21 20 24 24 C 1.46492 * 124.85107 * 179.97438 * 23 22 21 25 25 C 1.34660 * 110.29488 * 0.02562 * 23 22 21 26 26 H 1.09002 * 109.46751 * 179.64011 * 1 2 3 27 27 H 1.09000 * 109.46772 * 299.63976 * 1 2 3 28 28 H 1.08998 * 109.47149 * 59.64195 * 1 2 3 29 29 H 0.96990 * 120.00072 * 334.99977 * 6 4 2 30 30 H 0.96998 * 119.99821 * 179.97438 * 10 9 7 31 31 H 1.08995 * 111.00191 * 82.57036 * 15 4 2 32 32 H 1.08993 * 111.00682 * 206.38837 * 15 4 2 33 33 H 1.08999 * 110.49846 * 278.44901 * 16 15 4 34 34 H 1.09007 * 110.33614 * 156.06151 * 16 15 4 35 35 H 1.08002 * 126.83106 * 0.02562 * 21 20 18 36 36 H 1.08005 * 125.57368 * 179.80125 * 22 21 20 37 37 H 1.09006 * 109.46904 * 270.02296 * 24 23 22 38 38 H 1.08997 * 109.47399 * 30.02415 * 24 23 22 39 39 H 1.09002 * 109.47336 * 150.02669 * 24 23 22 40 40 H 1.08005 * 125.79918 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 1.3052 -1.4460 1.6182 6 7 2.4555 0.1960 2.2875 7 6 2.4583 -0.1947 3.6000 8 1 2.1647 -1.1997 3.8649 9 6 2.8374 0.7014 4.5900 10 7 3.1937 1.9267 4.2673 11 14 2.8404 0.1688 6.3805 12 1 2.4005 -1.2463 6.4767 13 1 4.2124 0.2998 6.9336 14 1 1.9104 1.0296 7.1545 15 6 3.2876 -1.5143 0.6924 16 6 2.8098 -1.8825 -0.7369 17 7 2.0301 -0.7141 -1.1840 18 6 1.8074 -0.3620 -2.4658 19 8 1.2288 0.6774 -2.7192 20 6 2.2647 -1.2358 -3.5594 21 6 2.8438 -2.5776 -3.4324 22 6 3.1163 -2.9917 -4.6825 23 7 2.7465 -2.0153 -5.5610 24 6 2.8888 -2.1011 -7.0165 25 6 2.2331 -0.9612 -4.8988 26 1 -0.3633 -1.0277 -0.0065 27 1 -0.3633 0.5082 0.8932 28 1 -0.3633 0.5194 -0.8867 29 1 2.7188 1.0986 2.0496 30 1 3.4583 2.5529 4.9591 31 1 4.1654 -0.8690 0.6604 32 1 3.4856 -2.4108 1.2799 33 1 2.1801 -2.7718 -0.7115 34 1 3.6655 -2.0413 -1.3932 35 1 3.0198 -3.1227 -2.5168 36 1 3.5556 -3.9420 -4.9478 37 1 3.8618 -1.7072 -7.3102 38 1 2.8091 -3.1424 -7.3286 39 1 2.1015 -1.5175 -7.4936 40 1 1.8629 -0.0518 -5.3487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986163375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:50 Heat of formation + Delta-G solvation = 40.299618 kcal Electronic energy + Delta-G solvation = -21474.834888 eV Core-core repulsion = 18291.256820 eV Total energy + Delta-G solvation = -3183.578068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31496 -39.44042 -37.07490 -34.07704 -33.03970 -31.38374 -30.75944 -29.37701 -28.88020 -26.77201 -25.13892 -23.32467 -23.01596 -21.06821 -20.49892 -19.66738 -18.84424 -17.22997 -17.08356 -16.05830 -15.68205 -15.46245 -14.84403 -14.51431 -14.00716 -13.63373 -13.55550 -13.29806 -13.18319 -12.97359 -12.75703 -12.51112 -12.43232 -12.09709 -11.95861 -11.71463 -11.28630 -11.01684 -10.93669 -10.75810 -10.50436 -10.15488 -9.92635 -9.71020 -9.45849 -8.89503 -8.69292 -8.48371 -8.10683 -6.97027 -5.76880 -3.06812 1.83236 2.36789 2.65854 3.43741 3.46404 3.50860 3.52031 3.79931 4.42540 4.59427 4.75410 4.77241 4.88619 5.01990 5.03014 5.18868 5.40033 5.45474 5.49836 5.61357 5.72346 5.75173 5.84576 5.92116 5.96970 6.10805 6.21634 6.23869 6.41489 6.58061 6.66512 6.69498 6.72466 6.84837 7.00379 7.03169 7.09610 7.70671 8.02051 8.40611 8.65392 9.52057 10.07787 10.42649 11.45475 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.003583 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.545343 B = 7812.251885 C = 8148.432563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.241 4.241 8 H 0.073 0.927 9 C -0.012 4.012 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.158 4.158 16 C 0.097 3.903 17 N -0.603 5.603 18 C 0.602 3.398 19 O -0.558 6.558 20 C -0.222 4.222 21 C -0.174 4.174 22 C -0.024 4.024 23 N -0.450 5.450 24 C 0.070 3.930 25 C 0.068 3.932 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.386 0.614 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -11.652 -21.190 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.199 4.199 16 C -0.027 4.027 17 N -0.336 5.336 18 C 0.393 3.607 19 O -0.438 6.438 20 C -0.232 4.232 21 C -0.198 4.198 22 C -0.150 4.150 23 N -0.126 5.126 24 C -0.072 4.072 25 C -0.067 4.067 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.360 -11.197 -21.554 24.291 hybrid contribution 0.263 -0.053 0.872 0.912 sum -0.097 -11.249 -20.682 23.543 Atomic orbital electron populations 1.22028 0.95107 1.01463 1.02500 1.21917 0.94247 0.97002 0.84528 0.90575 1.21247 0.93571 0.91554 0.87188 0.91544 1.42367 1.79275 1.11921 1.01922 1.19270 1.38060 0.96899 0.82955 0.90952 1.24766 1.02099 0.95890 0.98060 1.69683 1.51365 1.04604 1.32137 0.86113 0.77164 0.77595 0.85264 1.20512 1.21889 1.21872 1.23633 1.01316 1.01595 0.93378 1.22683 0.94859 0.88379 0.96744 1.48273 1.52247 1.28353 1.04701 1.17001 0.78596 0.84371 0.80781 1.90741 1.44295 1.25223 1.83590 1.20385 1.13091 0.97163 0.92590 1.22574 1.04630 0.95475 0.97115 1.21776 1.08710 0.95413 0.89116 1.43603 1.47922 1.14230 1.06882 1.22086 1.03414 1.04167 0.77491 1.21741 1.00869 0.92612 0.91495 0.93163 0.91217 0.92235 0.77983 0.93477 0.90730 0.90730 0.91892 0.90498 0.82707 0.81781 0.90765 0.89729 0.89704 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.11 37.16 0.34 -2.41 16 2 C 0.13 2.42 3.18 -66.95 -0.21 2.21 16 3 H 0.08 1.64 7.72 -51.93 -0.40 1.24 16 4 C 0.18 3.52 3.14 -66.09 -0.21 3.31 16 5 H 0.07 1.32 7.80 -51.93 -0.41 0.91 16 6 N -0.71 -17.82 5.22 -51.65 -0.27 -18.09 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 11 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C -0.16 -2.71 6.78 -24.46 -0.17 -2.87 16 16 C 0.10 1.39 5.13 -2.41 -0.01 1.38 16 17 N -0.60 -10.39 3.06 -164.18 -0.50 -10.89 16 18 C 0.60 10.76 7.58 -12.59 -0.10 10.67 16 19 O -0.56 -11.64 16.17 5.25 0.08 -11.56 16 20 C -0.22 -3.22 6.18 -103.35 -0.64 -3.85 16 21 C -0.17 -2.03 9.25 -37.50 -0.35 -2.38 16 22 C -0.02 -0.22 11.34 -16.82 -0.19 -0.41 16 23 N -0.45 -4.11 3.09 -124.53 -0.38 -4.49 16 24 C 0.07 0.32 11.03 59.84 0.66 0.98 16 25 C 0.07 0.81 11.12 -16.84 -0.19 0.62 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.11 7.07 -51.93 -0.37 0.74 16 29 H 0.39 10.41 7.56 -40.82 -0.31 10.10 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 34 H 0.08 0.99 5.89 -51.93 -0.31 0.69 16 35 H 0.16 1.61 5.16 -52.49 -0.27 1.34 16 36 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 39 H 0.08 0.30 8.13 -51.93 -0.42 -0.13 16 40 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -33.85 328.98 -7.53 -41.38 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.81 Total: 8.76 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.30 Total: 0.09 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.43 Total: -60.82 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.85 -7.53 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986163375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.679 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds