Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.99624 * 2 1 4 4 C 1.54329 * 109.77473 * 121.16483 * 2 1 3 5 5 H 1.09007 * 110.51542 * 215.80760 * 4 2 1 6 6 N 1.46503 * 110.85206 * 339.02867 * 4 2 1 7 7 C 1.36935 * 119.99678 * 200.14880 * 6 4 2 8 8 H 1.08005 * 120.00215 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99771 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00125 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46976 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46624 * 119.99937 * 11 9 7 14 14 H 1.48496 * 109.47423 * 240.00027 * 11 9 7 15 15 C 1.55159 * 103.02245 * 97.49837 * 4 2 1 16 16 C 1.54910 * 101.58155 * 35.30330 * 15 4 2 17 17 N 1.47019 * 109.88284 * 238.90296 * 2 1 3 18 18 C 1.34784 * 125.64840 * 59.56182 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 C 1.50698 * 109.47173 * 180.02562 * 20 18 17 22 22 C 1.34856 * 125.89364 * 84.99462 * 21 20 18 23 23 C 1.40893 * 107.41920 * 180.02562 * 22 21 20 24 24 C 1.34850 * 107.41636 * 0.02562 * 23 22 21 25 25 N 1.36347 * 108.22135 * 359.73331 * 24 23 22 26 26 H 0.96998 * 125.64107 * 180.26630 * 25 24 23 27 27 H 1.08993 * 109.47184 * 179.63924 * 1 2 3 28 28 H 1.08997 * 109.47190 * 299.64700 * 1 2 3 29 29 H 1.09003 * 109.46714 * 59.64018 * 1 2 3 30 30 H 0.96998 * 120.00116 * 20.14829 * 6 4 2 31 31 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00081 * 277.23050 * 15 4 2 33 33 H 1.08998 * 111.03932 * 153.39244 * 15 4 2 34 34 H 1.09002 * 110.36832 * 204.15743 * 16 15 4 35 35 H 1.08998 * 110.46009 * 81.87490 * 16 15 4 36 36 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 37 37 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 38 38 H 1.07993 * 126.29033 * 359.97438 * 22 21 20 39 39 H 1.07995 * 126.29553 * 180.02562 * 23 22 21 40 40 H 1.07996 * 125.89307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9606 -0.2815 1.6197 6 7 1.0256 -0.8101 2.2863 7 6 1.3837 -1.0487 3.5862 8 1 2.4229 -1.1941 3.8422 9 6 0.4110 -1.1046 4.5750 10 7 -0.8554 -0.9278 4.2630 11 14 0.8994 -1.4308 6.3483 12 1 2.3730 -1.5926 6.4341 13 1 0.4772 -0.2871 7.1963 14 1 0.2362 -2.6713 6.8243 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8466 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5728 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9283 -0.6306 -4.9095 22 6 2.5317 0.3797 -5.5682 23 6 1.8079 0.6001 -6.7567 24 6 0.7894 -0.2834 -6.7788 25 7 0.8613 -1.0453 -5.6503 26 1 0.2528 -1.7622 -5.4126 27 1 -0.3633 -1.0276 -0.0065 28 1 -0.3633 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8868 30 1 0.0923 -0.6798 2.0564 31 1 -1.5352 -0.9673 4.9539 32 1 1.4521 -2.7778 0.6579 33 1 3.1325 -2.6598 1.2790 34 1 2.7177 -2.7049 -1.3932 35 1 3.9125 -1.5595 -0.7133 36 1 3.4492 -1.1857 -3.5197 37 1 2.0109 -2.2343 -3.5035 38 1 3.4081 0.9209 -5.2438 39 1 2.0282 1.3406 -7.5113 40 1 0.0472 -0.3747 -7.5580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987560770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 32.203792 kcal Electronic energy + Delta-G solvation = -21462.237540 eV Core-core repulsion = 18278.308411 eV Total energy + Delta-G solvation = -3183.929129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18844 -39.82796 -37.43130 -34.19952 -32.35014 -31.26849 -30.92911 -30.67903 -28.89526 -26.45606 -25.22571 -23.48780 -22.58480 -20.70176 -20.35657 -19.69408 -18.63647 -17.57681 -17.38908 -16.85318 -15.74494 -15.18948 -14.76891 -14.41228 -13.95785 -13.70704 -13.61975 -13.45153 -13.19450 -13.10397 -12.47921 -12.35444 -12.28011 -12.05093 -11.88486 -11.61705 -11.52083 -11.22563 -10.99528 -10.84929 -10.48037 -10.21639 -9.98643 -9.75209 -9.50862 -8.97859 -8.84511 -8.38784 -8.04650 -7.04734 -5.84078 -3.13944 2.17400 2.80410 2.94794 3.22224 3.38848 3.39429 3.45304 3.47239 4.53075 4.61742 4.76868 4.93089 5.03591 5.14619 5.27417 5.30614 5.37291 5.49719 5.52597 5.57651 5.62773 5.70331 5.80977 6.03482 6.09489 6.20464 6.20897 6.29822 6.30944 6.53888 6.55411 6.70222 6.82037 6.97169 6.97491 7.10962 7.53912 7.64521 7.78411 8.34145 8.38542 9.46176 10.01377 10.36220 11.38474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047934 B = 0.003382 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.999763 B = 8277.369286 C = 8527.689275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.063 0.937 6 N -0.718 5.718 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.153 4.153 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.524 3.476 19 O -0.530 6.530 20 C -0.068 4.068 21 C 0.036 3.964 22 C -0.182 4.182 23 C -0.201 4.201 24 C -0.015 4.015 25 N -0.553 5.553 26 H 0.411 0.589 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -3.112 -18.676 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.089 0.911 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.195 4.195 16 C -0.027 4.027 17 N -0.346 5.346 18 C 0.311 3.689 19 O -0.406 6.406 20 C -0.109 4.109 21 C -0.077 4.077 22 C -0.207 4.207 23 C -0.226 4.226 24 C -0.146 4.146 25 N -0.148 5.148 26 H 0.247 0.753 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.618 -2.694 -18.666 19.987 hybrid contribution -0.365 -0.571 1.058 1.256 sum 6.253 -3.265 -17.608 18.969 Atomic orbital electron populations 1.21993 0.94683 1.02279 1.02636 1.21814 0.95324 0.95768 0.84530 0.91106 1.21178 0.93200 0.92038 0.87445 0.91956 1.42681 1.05142 1.85280 1.03035 1.19285 0.93030 1.41117 0.84024 0.90993 1.24764 0.95297 1.02517 0.98177 1.69671 0.99296 1.56410 1.32513 0.86105 0.77524 0.77433 0.85012 1.20498 1.21818 1.21863 1.23542 1.01635 1.01315 0.92975 1.22394 0.94555 0.88433 0.97292 1.48633 1.50285 1.30712 1.04952 1.20099 0.81300 0.85309 0.82149 1.90719 1.38130 1.28705 1.83065 1.20112 1.02773 0.99367 0.88615 1.19547 0.92501 1.01075 0.94568 1.20606 1.03164 1.00066 0.96826 1.20845 0.98574 1.03015 1.00183 1.21750 1.03073 0.97511 0.92250 1.41887 1.24551 1.30197 1.18148 0.75313 0.92650 0.90289 0.92218 0.77106 0.93420 0.90735 0.90579 0.91470 0.91542 0.87016 0.88674 0.85076 0.84940 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 7.93 37.16 0.29 -2.70 16 2 C 0.13 2.28 3.49 -66.95 -0.23 2.05 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.27 3.45 -66.09 -0.23 3.04 16 5 H 0.06 1.18 8.12 -51.92 -0.42 0.75 16 6 N -0.72 -17.20 5.02 -51.64 -0.26 -17.46 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 11 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 C -0.15 -2.41 6.77 -24.58 -0.17 -2.58 16 16 C 0.10 1.18 6.69 -2.53 -0.02 1.16 16 17 N -0.61 -9.09 3.08 -163.01 -0.50 -9.59 16 18 C 0.52 7.87 7.63 -10.99 -0.08 7.79 16 19 O -0.53 -10.09 14.92 5.56 0.08 -10.01 16 20 C -0.07 -0.73 5.24 -29.04 -0.15 -0.88 16 21 C 0.04 0.44 5.66 -81.79 -0.46 -0.02 16 22 C -0.18 -2.33 10.77 -39.78 -0.43 -2.76 16 23 C -0.20 -2.36 10.86 -39.78 -0.43 -2.79 16 24 C -0.01 -0.15 11.94 -16.75 -0.20 -0.35 16 25 N -0.55 -5.88 6.08 -9.12 -0.06 -5.94 16 26 H 0.41 3.33 8.96 -40.82 -0.37 2.96 16 27 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 28 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 29 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 30 H 0.39 9.95 4.94 -40.82 -0.20 9.75 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.65 7.48 -51.93 -0.39 0.27 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -32.94 328.83 -8.26 -41.20 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.83 Total: 11.88 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.36 Total: -5.08 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.09 Total: -59.73 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.94 -8.26 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987560770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.404 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds