Wall clock time and date at job start Mon Mar 30 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.99624 * 2 1 4 4 C 1.54329 * 109.77473 * 121.16483 * 2 1 3 5 5 H 1.09007 * 110.51542 * 215.80760 * 4 2 1 6 6 N 1.46503 * 110.85206 * 339.02867 * 4 2 1 7 7 C 1.36935 * 119.99678 * 200.14880 * 6 4 2 8 8 H 1.08005 * 120.00215 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99771 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00125 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46976 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46624 * 119.99937 * 11 9 7 14 14 H 1.48496 * 109.47423 * 240.00027 * 11 9 7 15 15 C 1.55159 * 103.02245 * 97.49837 * 4 2 1 16 16 C 1.54910 * 101.58155 * 35.30330 * 15 4 2 17 17 N 1.47019 * 109.88284 * 238.90296 * 2 1 3 18 18 C 1.34784 * 125.64840 * 59.56182 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 C 1.50698 * 109.47173 * 180.02562 * 20 18 17 22 22 C 1.34856 * 125.89364 * 84.99462 * 21 20 18 23 23 C 1.40893 * 107.41920 * 180.02562 * 22 21 20 24 24 C 1.34850 * 107.41636 * 0.02562 * 23 22 21 25 25 N 1.36347 * 108.22135 * 359.73331 * 24 23 22 26 26 H 0.96998 * 125.64107 * 180.26630 * 25 24 23 27 27 H 1.08993 * 109.47184 * 179.63924 * 1 2 3 28 28 H 1.08997 * 109.47190 * 299.64700 * 1 2 3 29 29 H 1.09003 * 109.46714 * 59.64018 * 1 2 3 30 30 H 0.96998 * 120.00116 * 20.14829 * 6 4 2 31 31 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 32 32 H 1.08997 * 111.00081 * 277.23050 * 15 4 2 33 33 H 1.08998 * 111.03932 * 153.39244 * 15 4 2 34 34 H 1.09002 * 110.36832 * 204.15743 * 16 15 4 35 35 H 1.08998 * 110.46009 * 81.87490 * 16 15 4 36 36 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 37 37 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 38 38 H 1.07993 * 126.29033 * 359.97438 * 22 21 20 39 39 H 1.07995 * 126.29553 * 180.02562 * 23 22 21 40 40 H 1.07996 * 125.89307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9606 -0.2815 1.6197 6 7 1.0256 -0.8101 2.2863 7 6 1.3837 -1.0487 3.5862 8 1 2.4229 -1.1941 3.8422 9 6 0.4110 -1.1046 4.5750 10 7 -0.8554 -0.9278 4.2630 11 14 0.8994 -1.4308 6.3483 12 1 2.3730 -1.5926 6.4341 13 1 0.4772 -0.2871 7.1963 14 1 0.2362 -2.6713 6.8243 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8466 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5728 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 6 1.9283 -0.6306 -4.9095 22 6 2.5317 0.3797 -5.5682 23 6 1.8079 0.6001 -6.7567 24 6 0.7894 -0.2834 -6.7788 25 7 0.8613 -1.0453 -5.6503 26 1 0.2528 -1.7622 -5.4126 27 1 -0.3633 -1.0276 -0.0065 28 1 -0.3633 0.5083 0.8931 29 1 -0.3633 0.5194 -0.8868 30 1 0.0923 -0.6798 2.0564 31 1 -1.5352 -0.9673 4.9539 32 1 1.4521 -2.7778 0.6579 33 1 3.1325 -2.6598 1.2790 34 1 2.7177 -2.7049 -1.3932 35 1 3.9125 -1.5595 -0.7133 36 1 3.4492 -1.1857 -3.5197 37 1 2.0109 -2.2343 -3.5035 38 1 3.4081 0.9209 -5.2438 39 1 2.0282 1.3406 -7.5113 40 1 0.0472 -0.3747 -7.5580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987560770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:04 Heat of formation + Delta-G solvation = 10.436813 kcal Electronic energy + Delta-G solvation = -21463.181427 eV Core-core repulsion = 18278.308411 eV Total energy + Delta-G solvation = -3184.873016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05223 -41.05285 -38.78771 -35.90895 -33.73225 -32.67200 -32.00304 -31.76289 -30.48718 -27.41990 -26.77848 -25.31254 -23.80773 -21.62212 -21.31867 -20.84110 -19.93869 -19.43484 -18.27496 -18.10885 -17.04654 -16.43761 -16.42729 -15.83233 -15.50420 -14.88050 -14.70130 -14.51212 -14.44147 -14.20988 -13.85603 -13.63792 -13.33527 -13.18733 -13.09458 -12.99024 -12.90686 -12.86315 -12.59769 -12.43607 -12.04481 -12.00571 -11.60015 -11.50891 -10.92557 -10.81011 -9.69375 -9.62595 -9.00770 -8.89581 -7.93697 -5.22634 1.29143 1.49466 1.50285 1.59979 1.67521 1.98346 2.25578 2.55644 2.59013 3.37922 3.57556 3.79817 3.82204 3.93721 4.08577 4.20488 4.24337 4.39292 4.43473 4.47936 4.55810 4.58954 4.66473 4.67652 4.82908 4.87749 4.89850 5.06752 5.20819 5.27816 5.34246 5.39100 5.44757 5.52348 5.56521 6.12077 6.25951 6.28302 6.61992 6.83501 7.22003 7.35408 8.09492 8.32623 9.30302 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047934 B = 0.003382 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.999763 B = 8277.369286 C = 8527.689275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 H 0.060 0.940 4 C 0.164 3.836 5 H 0.065 0.935 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.299 1.299 14 H -0.296 1.296 15 C -0.145 4.145 16 C 0.103 3.897 17 N -0.610 5.610 18 C 0.521 3.479 19 O -0.578 6.578 20 C -0.056 4.056 21 C 0.020 3.980 22 C -0.208 4.208 23 C -0.228 4.228 24 C -0.011 4.011 25 N -0.551 5.551 26 H 0.422 0.578 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.380 0.620 31 H 0.250 0.750 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -4.784 -19.915 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.078 0.922 4 C 0.054 3.946 5 H 0.083 0.917 6 N -0.377 5.377 7 C -0.367 4.367 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.226 1.226 14 H -0.223 1.223 15 C -0.186 4.186 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.311 3.689 19 O -0.457 6.457 20 C -0.096 4.096 21 C -0.094 4.094 22 C -0.233 4.233 23 C -0.253 4.253 24 C -0.143 4.143 25 N -0.147 5.147 26 H 0.260 0.740 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.216 0.784 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.161 0.839 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 8.645 -4.406 -19.936 22.172 hybrid contribution -0.948 0.004 1.342 1.643 sum 7.697 -4.402 -18.594 20.600 Atomic orbital electron populations 1.21794 0.96038 1.01245 1.00958 1.21523 0.94082 0.95649 0.85728 0.92176 1.21399 0.91929 0.94511 0.86744 0.91661 1.42870 1.05732 1.85534 1.03532 1.19695 0.93301 1.38602 0.85126 0.89986 1.25559 0.95385 1.03876 1.02113 1.69833 1.00307 1.58885 1.33274 0.85079 0.77983 0.76473 0.80243 1.18606 1.22611 1.22311 1.23348 1.01408 0.98332 0.95469 1.22578 0.95237 0.88693 0.95326 1.48663 1.50416 1.31080 1.04222 1.20925 0.80377 0.84982 0.82643 1.90704 1.40322 1.30988 1.83708 1.20157 1.04124 0.99638 0.85718 1.19782 0.92981 1.01353 0.95234 1.20872 1.03848 1.00799 0.97787 1.21159 0.99383 1.04166 1.00560 1.22284 1.02953 0.96471 0.92571 1.41986 1.24317 1.30385 1.18006 0.73971 0.93287 0.92807 0.92837 0.78428 0.94151 0.92590 0.89330 0.87630 0.88623 0.84226 0.85607 0.85167 0.83921 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 7.93 71.98 0.57 -4.99 16 2 C 0.13 4.73 3.49 45.35 0.16 4.88 16 3 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.16 6.05 3.45 46.18 0.16 6.21 16 5 H 0.07 2.37 8.12 -2.38 -0.02 2.35 16 6 N -0.73 -35.53 5.02 -317.30 -1.59 -37.12 16 7 C -0.24 -12.50 9.98 84.03 0.84 -11.66 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 11 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 15 C -0.14 -4.18 6.77 31.99 0.22 -3.96 16 16 C 0.10 2.08 6.69 86.86 0.58 2.66 16 17 N -0.61 -16.74 3.08 -788.04 -2.43 -19.17 16 18 C 0.52 14.58 7.63 87.65 0.67 15.24 16 19 O -0.58 -21.77 14.92 -3.04 -0.05 -21.82 16 20 C -0.06 -1.01 5.24 29.10 0.15 -0.86 16 21 C 0.02 0.44 5.66 41.08 0.23 0.67 16 22 C -0.21 -5.12 10.77 22.14 0.24 -4.88 16 23 C -0.23 -5.09 10.86 22.14 0.24 -4.85 16 24 C -0.01 -0.21 11.94 83.21 0.99 0.78 16 25 N -0.55 -10.49 6.08 -182.76 -1.11 -11.60 16 26 H 0.42 5.77 8.96 -92.71 -0.83 4.94 16 27 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 28 H 0.05 2.35 6.73 -2.39 -0.02 2.33 16 29 H 0.05 2.13 6.74 -2.39 -0.02 2.11 16 30 H 0.38 19.97 4.94 -92.71 -0.46 19.51 16 31 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.11 1.42 7.48 -2.39 -0.02 1.41 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.13 1.51 7.85 -2.39 -0.02 1.49 16 38 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -73.68 328.83 2.42 -71.26 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.24 Total: 34.54 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.52 Total: -4.61 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -4.85 Total: -126.51 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.68 2.42 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987560770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.697 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds