Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.33285 * 2 1 4 4 C 1.54916 * 110.36895 * 122.23645 * 2 1 3 5 5 C 1.55160 * 101.58255 * 155.84690 * 4 2 1 6 6 H 1.08999 * 110.71957 * 82.85970 * 5 4 2 7 7 N 1.46501 * 110.71885 * 205.96022 * 5 4 2 8 8 C 1.36941 * 119.99604 * 202.55703 * 7 5 4 9 9 H 1.07996 * 120.00398 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99786 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00080 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47297 * 89.99587 * 12 10 8 14 14 H 1.48500 * 109.47215 * 209.99529 * 12 10 8 15 15 H 1.48497 * 109.47174 * 329.99651 * 12 10 8 16 16 C 1.54327 * 102.94204 * 324.50109 * 5 4 2 17 17 N 1.47021 * 107.27292 * 22.19040 * 16 5 4 18 18 C 1.34777 * 125.64848 * 181.10610 * 17 16 5 19 19 O 1.21692 * 119.99536 * 175.26640 * 18 17 16 20 20 C 1.46673 * 120.00237 * 355.26236 * 18 17 16 21 21 C 1.37873 * 126.22972 * 5.58137 * 20 18 17 22 22 C 1.39835 * 107.08435 * 179.97438 * 21 20 18 23 23 C 1.35453 * 107.86524 * 359.97438 * 22 21 20 24 24 N 1.35535 * 108.86921 * 359.77146 * 23 22 21 25 25 C 1.46502 * 125.67614 * 180.26131 * 24 23 22 26 26 H 1.09010 * 109.46923 * 297.76053 * 1 2 3 27 27 H 1.08995 * 109.47559 * 57.76225 * 1 2 3 28 28 H 1.09002 * 109.47201 * 177.76653 * 1 2 3 29 29 H 1.09000 * 110.99857 * 37.77587 * 4 2 1 30 30 H 1.09001 * 111.00516 * 273.92160 * 4 2 1 31 31 H 0.96997 * 120.00103 * 22.56004 * 7 5 4 32 32 H 0.97009 * 119.99598 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.88298 * 141.61196 * 16 5 4 34 34 H 1.08997 * 109.88114 * 262.77611 * 16 5 4 35 35 H 1.08000 * 126.46281 * 359.97438 * 21 20 18 36 36 H 1.08000 * 126.06998 * 180.02562 * 22 21 20 37 37 H 1.08003 * 125.56729 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47305 * 274.70925 * 25 24 23 39 39 H 1.08998 * 109.47059 * 34.71393 * 25 24 23 40 40 H 1.09004 * 109.47122 * 154.71309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 1.2284 5 6 3.4778 -1.1990 0.7354 6 1 4.1945 -0.3893 0.8725 7 7 3.9267 -2.4091 1.4285 8 6 5.2633 -2.6964 1.5082 9 1 5.9864 -2.0308 1.0606 10 6 5.6886 -3.8433 2.1645 11 7 4.8074 -4.6542 2.7104 12 14 7.5118 -4.2349 2.2740 13 1 8.0769 -3.6216 3.5028 14 1 7.6998 -5.7071 2.3241 15 1 8.2082 -3.6872 1.0822 16 6 3.2493 -1.4776 -0.7653 17 7 2.0430 -0.7396 -1.1676 18 6 1.4963 -0.7400 -2.3994 19 8 0.4454 -0.1596 -2.5988 20 6 2.1678 -1.4399 -3.4997 21 6 3.2975 -2.2236 -3.3979 22 6 3.5899 -2.6916 -4.6828 23 6 2.6542 -2.1971 -5.5281 24 7 1.7811 -1.4393 -4.8207 25 6 0.6208 -0.7342 -5.3711 26 1 -0.3633 0.4787 0.9095 27 1 -0.3634 0.5482 -0.8692 28 1 -0.3634 -1.0269 -0.0401 29 1 1.4510 -1.6466 1.4424 30 1 2.1399 -0.1243 2.1003 31 1 3.2773 -3.0068 1.8308 32 1 5.1047 -5.4555 3.1694 33 1 4.1064 -1.1294 -1.3416 34 1 3.1013 -2.5455 -0.9257 35 1 3.8522 -2.4361 -2.4959 36 1 4.4149 -3.3341 -4.9531 37 1 2.6086 -2.3803 -6.5915 38 1 0.9335 0.2380 -5.7519 39 1 0.1903 -1.3210 -6.1825 40 1 -0.1247 -0.5950 -4.5881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988128671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = 42.755802 kcal Electronic energy + Delta-G solvation = -21942.922673 eV Core-core repulsion = 18759.451113 eV Total energy + Delta-G solvation = -3183.471560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29117 -39.48383 -37.18788 -34.20275 -33.02682 -31.75293 -31.39409 -28.78636 -28.35851 -26.53226 -25.42603 -24.04716 -22.79056 -20.93038 -20.40606 -19.91451 -18.82005 -17.27901 -16.76011 -16.35508 -15.66663 -15.39159 -14.86346 -14.46273 -13.92650 -13.71852 -13.59558 -13.37385 -13.10479 -12.98193 -12.65686 -12.35866 -12.28749 -12.03190 -11.87124 -11.81990 -11.68437 -11.21468 -10.94585 -10.67906 -10.60703 -10.30547 -10.04047 -9.75129 -9.45146 -8.98391 -8.63555 -8.37437 -8.05101 -7.09493 -5.84772 -3.15848 1.63482 2.68961 2.87680 3.40166 3.44551 3.47204 3.47773 3.59609 4.51647 4.70324 4.82620 5.01633 5.10976 5.17023 5.21123 5.24452 5.48794 5.49579 5.54845 5.59307 5.68758 5.69617 5.84879 5.89586 6.10316 6.14836 6.20585 6.26638 6.32027 6.43505 6.48503 6.53133 6.69202 6.85736 6.94782 7.10899 7.29978 7.63738 7.81501 8.32305 8.40767 9.44684 9.98240 10.33153 11.37148 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.005244 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.000810 B = 5338.573251 C = 6635.019964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.170 3.830 6 H 0.067 0.933 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.067 3.933 17 N -0.596 5.596 18 C 0.602 3.398 19 O -0.564 6.564 20 C -0.050 4.050 21 C -0.146 4.146 22 C -0.209 4.209 23 C 0.006 3.994 24 N -0.416 5.416 25 C 0.064 3.936 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.387 0.613 32 H 0.257 0.743 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 7.882 -13.017 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.058 3.942 6 H 0.085 0.915 7 N -0.352 5.352 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.058 4.058 17 N -0.328 5.328 18 C 0.393 3.607 19 O -0.446 6.446 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.234 4.234 23 C -0.129 4.129 24 N -0.090 5.090 25 C -0.077 4.077 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.222 0.778 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.532 8.350 -13.276 17.398 hybrid contribution 0.940 -0.662 0.005 1.150 sum -6.592 7.688 -13.271 16.694 Atomic orbital electron populations 1.22139 0.94181 1.02710 1.02593 1.21889 0.94866 0.95191 0.84390 0.90835 1.23178 0.97903 1.00376 0.96179 1.21218 0.93191 0.91176 0.88614 0.91460 1.42379 1.05520 1.23401 1.63913 1.19259 0.83487 1.05158 1.30150 0.90875 1.24762 0.97690 0.97433 1.00499 1.69665 1.32399 1.14554 1.41017 0.86194 0.84851 0.77315 0.77831 1.21640 1.21733 1.20578 1.23686 0.85368 0.96776 0.99996 1.48204 1.28637 1.47791 1.08149 1.16581 0.83491 0.79633 0.80967 1.90652 1.23019 1.47721 1.83220 1.20025 1.01288 1.10204 0.84747 1.22243 0.96497 0.99015 0.99381 1.20906 1.02347 1.06948 0.93157 1.21962 0.93442 0.99586 0.97866 1.43790 1.21756 1.37268 1.06143 1.22272 0.87706 0.96612 1.01106 0.92417 0.90112 0.92741 0.90449 0.90065 0.77834 0.93339 0.91531 0.90177 0.81988 0.84100 0.81776 0.91115 0.90414 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.52 37.15 0.32 -1.94 16 2 C 0.14 2.09 3.79 -66.42 -0.25 1.83 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -2.16 6.12 -24.58 -0.15 -2.31 16 5 C 0.17 3.15 3.59 -66.09 -0.24 2.91 16 6 H 0.07 1.24 8.11 -51.93 -0.42 0.81 16 7 N -0.71 -16.67 5.17 -51.65 -0.27 -16.94 16 8 C -0.25 -6.51 9.97 -15.06 -0.15 -6.66 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 12 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.07 1.17 4.74 -3.06 -0.01 1.15 16 17 N -0.60 -9.84 3.24 -164.57 -0.53 -10.37 16 18 C 0.60 10.37 7.63 -12.86 -0.10 10.28 16 19 O -0.56 -10.13 12.17 5.20 0.06 -10.07 16 20 C -0.05 -0.81 6.86 -81.98 -0.56 -1.37 16 21 C -0.15 -2.30 9.32 -39.12 -0.36 -2.66 16 22 C -0.21 -2.84 10.81 -39.98 -0.43 -3.28 16 23 C 0.01 0.08 11.38 -16.91 -0.19 -0.12 16 24 N -0.42 -5.71 3.16 -120.24 -0.38 -6.09 16 25 C 0.06 0.69 10.76 59.85 0.64 1.33 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.08 1.25 6.09 -51.93 -0.32 0.93 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.29 7.92 -51.93 -0.41 0.87 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.39 9.75 7.74 -40.82 -0.32 9.43 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 1.12 6.90 -51.93 -0.36 0.76 16 34 H 0.08 1.53 6.83 -51.93 -0.35 1.17 16 35 H 0.16 2.64 4.42 -52.49 -0.23 2.41 16 36 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.36 5.98 -51.93 -0.31 1.05 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -30.46 321.76 -7.80 -38.27 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.65 Total: 11.25 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.59 Total: -1.12 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.46 Total: -59.68 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.06 Total: -10.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.46 -7.80 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988128671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.022 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds