Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.33285 * 2 1 4 4 C 1.54916 * 110.36895 * 122.23645 * 2 1 3 5 5 C 1.55160 * 101.58255 * 155.84690 * 4 2 1 6 6 H 1.08999 * 110.71957 * 82.85970 * 5 4 2 7 7 N 1.46501 * 110.71885 * 205.96022 * 5 4 2 8 8 C 1.36941 * 119.99604 * 202.55703 * 7 5 4 9 9 H 1.07996 * 120.00398 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99786 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00080 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47297 * 89.99587 * 12 10 8 14 14 H 1.48500 * 109.47215 * 209.99529 * 12 10 8 15 15 H 1.48497 * 109.47174 * 329.99651 * 12 10 8 16 16 C 1.54327 * 102.94204 * 324.50109 * 5 4 2 17 17 N 1.47021 * 107.27292 * 22.19040 * 16 5 4 18 18 C 1.34777 * 125.64848 * 181.10610 * 17 16 5 19 19 O 1.21692 * 119.99536 * 175.26640 * 18 17 16 20 20 C 1.46673 * 120.00237 * 355.26236 * 18 17 16 21 21 C 1.37873 * 126.22972 * 5.58137 * 20 18 17 22 22 C 1.39835 * 107.08435 * 179.97438 * 21 20 18 23 23 C 1.35453 * 107.86524 * 359.97438 * 22 21 20 24 24 N 1.35535 * 108.86921 * 359.77146 * 23 22 21 25 25 C 1.46502 * 125.67614 * 180.26131 * 24 23 22 26 26 H 1.09010 * 109.46923 * 297.76053 * 1 2 3 27 27 H 1.08995 * 109.47559 * 57.76225 * 1 2 3 28 28 H 1.09002 * 109.47201 * 177.76653 * 1 2 3 29 29 H 1.09000 * 110.99857 * 37.77587 * 4 2 1 30 30 H 1.09001 * 111.00516 * 273.92160 * 4 2 1 31 31 H 0.96997 * 120.00103 * 22.56004 * 7 5 4 32 32 H 0.97009 * 119.99598 * 180.02562 * 11 10 8 33 33 H 1.09002 * 109.88298 * 141.61196 * 16 5 4 34 34 H 1.08997 * 109.88114 * 262.77611 * 16 5 4 35 35 H 1.08000 * 126.46281 * 359.97438 * 21 20 18 36 36 H 1.08000 * 126.06998 * 180.02562 * 22 21 20 37 37 H 1.08003 * 125.56729 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.47305 * 274.70925 * 25 24 23 39 39 H 1.08998 * 109.47059 * 34.71393 * 25 24 23 40 40 H 1.09004 * 109.47122 * 154.71309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 1.2284 5 6 3.4778 -1.1990 0.7354 6 1 4.1945 -0.3893 0.8725 7 7 3.9267 -2.4091 1.4285 8 6 5.2633 -2.6964 1.5082 9 1 5.9864 -2.0308 1.0606 10 6 5.6886 -3.8433 2.1645 11 7 4.8074 -4.6542 2.7104 12 14 7.5118 -4.2349 2.2740 13 1 8.0769 -3.6216 3.5028 14 1 7.6998 -5.7071 2.3241 15 1 8.2082 -3.6872 1.0822 16 6 3.2493 -1.4776 -0.7653 17 7 2.0430 -0.7396 -1.1676 18 6 1.4963 -0.7400 -2.3994 19 8 0.4454 -0.1596 -2.5988 20 6 2.1678 -1.4399 -3.4997 21 6 3.2975 -2.2236 -3.3979 22 6 3.5899 -2.6916 -4.6828 23 6 2.6542 -2.1971 -5.5281 24 7 1.7811 -1.4393 -4.8207 25 6 0.6208 -0.7342 -5.3711 26 1 -0.3633 0.4787 0.9095 27 1 -0.3634 0.5482 -0.8692 28 1 -0.3634 -1.0269 -0.0401 29 1 1.4510 -1.6466 1.4424 30 1 2.1399 -0.1243 2.1003 31 1 3.2773 -3.0068 1.8308 32 1 5.1047 -5.4555 3.1694 33 1 4.1064 -1.1294 -1.3416 34 1 3.1013 -2.5455 -0.9257 35 1 3.8522 -2.4361 -2.4959 36 1 4.4149 -3.3341 -4.9531 37 1 2.6086 -2.3803 -6.5915 38 1 0.9335 0.2380 -5.7519 39 1 0.1903 -1.3210 -6.1825 40 1 -0.1247 -0.5950 -4.5881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988128671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = 24.148629 kcal Electronic energy + Delta-G solvation = -21943.729540 eV Core-core repulsion = 18759.451113 eV Total energy + Delta-G solvation = -3184.278427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39807 -40.76441 -38.58533 -35.96655 -34.12276 -33.20268 -32.92081 -30.15574 -29.78373 -27.52568 -26.68734 -25.87425 -24.14806 -22.16403 -21.80091 -21.08847 -20.00277 -19.18616 -17.91643 -17.70327 -17.03236 -16.50247 -16.38928 -15.83264 -15.45281 -15.22466 -15.03545 -14.57163 -14.38252 -14.21366 -14.01279 -13.60480 -13.31827 -13.21286 -13.11066 -13.02399 -12.91319 -12.83588 -12.77678 -12.26282 -12.10095 -11.98010 -11.70370 -11.53322 -10.98132 -10.66216 -9.76107 -9.63313 -9.16132 -9.04394 -7.92124 -5.22285 0.46815 1.52606 1.53138 1.59683 1.61791 1.82128 2.30083 2.34356 2.59779 3.38836 3.41388 3.83113 3.88450 3.90855 4.00180 4.18280 4.19930 4.30699 4.39370 4.44773 4.51324 4.53308 4.57915 4.72564 4.74774 4.81701 4.86691 5.09591 5.14976 5.16074 5.24554 5.29517 5.33280 5.52815 5.57390 5.84232 5.99447 6.28312 6.34884 6.48525 7.10510 7.36303 8.07213 8.31425 9.30908 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.005244 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.000810 B = 5338.573251 C = 6635.019964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.074 0.926 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.082 0.918 10 C -0.069 4.069 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.288 1.288 14 H -0.300 1.300 15 H -0.267 1.267 16 C 0.086 3.914 17 N -0.599 5.599 18 C 0.596 3.404 19 O -0.576 6.576 20 C -0.085 4.085 21 C -0.160 4.160 22 C -0.229 4.229 23 C 0.030 3.970 24 N -0.419 5.419 25 C 0.062 3.938 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.375 0.625 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.211 0.789 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 9.006 -14.874 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.092 0.908 7 N -0.362 5.362 8 C -0.374 4.374 9 H 0.100 0.900 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.798 3.202 13 H -0.215 1.215 14 H -0.226 1.226 15 H -0.192 1.192 16 C -0.039 4.039 17 N -0.331 5.331 18 C 0.388 3.612 19 O -0.460 6.460 20 C -0.197 4.197 21 C -0.187 4.187 22 C -0.252 4.252 23 C -0.106 4.106 24 N -0.092 5.092 25 C -0.078 4.078 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.176 0.824 37 H 0.227 0.773 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.341 9.535 -15.160 19.356 hybrid contribution 0.820 -0.956 0.473 1.345 sum -6.522 8.579 -14.688 18.217 Atomic orbital electron populations 1.22039 0.93441 1.01767 1.03386 1.22032 0.95434 0.95623 0.83277 0.89117 1.23086 0.95676 1.00371 0.97284 1.21411 0.94896 0.89484 0.88859 0.90762 1.42506 1.04533 1.24688 1.64497 1.19653 0.84820 1.04626 1.28293 0.90016 1.25507 1.01414 0.97880 1.01350 1.69817 1.34091 1.15093 1.42826 0.85210 0.80539 0.76367 0.78063 1.21532 1.22643 1.19189 1.23267 0.86036 0.95625 0.99009 1.48234 1.28353 1.47866 1.08636 1.16826 0.83430 0.79583 0.81324 1.90641 1.23448 1.48411 1.83484 1.19988 1.02164 1.11690 0.85886 1.22257 0.96691 0.99631 1.00083 1.21204 1.03717 1.07829 0.92472 1.22668 0.91528 0.96924 0.99488 1.44091 1.22502 1.37234 1.05394 1.22430 0.86392 0.97845 1.01165 0.89827 0.91207 0.94320 0.91597 0.88069 0.79222 0.94071 0.91153 0.92404 0.83499 0.82447 0.77278 0.89788 0.86925 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.52 71.98 0.61 -3.47 16 2 C 0.14 4.00 3.79 45.47 0.17 4.17 16 3 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.13 -3.84 6.12 31.99 0.20 -3.64 16 5 C 0.16 6.02 3.59 46.18 0.17 6.18 16 6 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 7 N -0.72 -34.25 5.17 -317.32 -1.64 -35.90 16 8 C -0.24 -12.66 9.97 84.03 0.84 -11.82 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 11 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 12 Si 0.97 44.55 29.55 68.60 2.03 46.57 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.09 3.03 4.74 86.73 0.41 3.44 16 17 N -0.60 -19.76 3.24 -792.81 -2.57 -22.33 16 18 C 0.60 20.58 7.63 86.45 0.66 21.24 16 19 O -0.58 -20.68 12.17 -4.32 -0.05 -20.73 16 20 C -0.08 -2.72 6.86 40.35 0.28 -2.44 16 21 C -0.16 -5.06 9.32 22.57 0.21 -4.85 16 22 C -0.23 -5.84 10.81 22.01 0.24 -5.61 16 23 C 0.03 0.63 11.38 83.48 0.95 1.58 16 24 N -0.42 -10.69 3.16 -534.31 -1.69 -12.38 16 25 C 0.06 1.18 10.76 127.77 1.38 2.55 16 26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.07 2.10 6.09 -2.39 -0.01 2.08 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 30 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.38 19.40 7.74 -92.71 -0.72 18.69 16 32 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 33 H 0.07 2.39 6.90 -2.39 -0.02 2.38 16 34 H 0.06 2.30 6.83 -2.39 -0.02 2.28 16 35 H 0.15 4.96 4.42 -2.91 -0.01 4.95 16 36 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 2.07 5.98 -2.39 -0.01 2.05 16 Total: -1.00 -66.51 321.76 3.26 -63.24 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.33 Total: 34.78 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.57 Total: 4.00 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.62 Total: -127.87 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.51 3.26 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988128671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.392 kcal (2) G-P(sol) polarization free energy of solvation -66.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds