Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99750 * 2 1 4 4 C 1.54316 * 109.88131 * 121.10060 * 2 1 3 5 5 C 1.55151 * 102.94466 * 141.60867 * 4 2 1 6 6 H 1.09000 * 111.00473 * 206.42094 * 5 4 2 7 7 N 1.46507 * 111.00407 * 82.60740 * 5 4 2 8 8 C 1.36937 * 120.00004 * 155.00354 * 7 5 4 9 9 H 1.08008 * 120.00033 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00148 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99775 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00131 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46907 * 89.99662 * 12 10 8 14 14 H 1.48501 * 109.47086 * 209.99957 * 12 10 8 15 15 H 1.48494 * 109.46863 * 330.00059 * 12 10 8 16 16 C 1.55130 * 101.48489 * 324.33127 * 5 4 2 17 17 N 1.47027 * 109.87726 * 238.90531 * 2 1 3 18 18 C 1.34770 * 125.64922 * 61.61031 * 17 2 1 19 19 O 1.21627 * 120.00310 * 5.58757 * 18 17 2 20 20 C 1.47263 * 119.99831 * 185.59563 * 18 17 2 21 21 C 1.46685 * 126.94397 * 6.85172 * 20 18 17 22 22 C 1.34486 * 106.33256 * 179.74370 * 21 20 18 23 23 N 1.36442 * 108.85762 * 0.24298 * 22 21 20 24 24 C 1.46507 * 124.85169 * 180.02562 * 23 22 21 25 25 C 1.34655 * 110.29777 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47594 * 179.64013 * 1 2 3 27 27 H 1.09004 * 109.47072 * 299.64186 * 1 2 3 28 28 H 1.09007 * 109.47036 * 59.63873 * 1 2 3 29 29 H 1.09010 * 110.71675 * 259.96951 * 4 2 1 30 30 H 1.09004 * 110.72426 * 23.06314 * 4 2 1 31 31 H 0.96996 * 120.00073 * 335.00057 * 7 5 4 32 32 H 0.97000 * 119.99710 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.49268 * 278.45271 * 16 5 4 34 34 H 1.08997 * 110.34506 * 156.06168 * 16 5 4 35 35 H 1.07997 * 126.83306 * 0.02562 * 21 20 18 36 36 H 1.08005 * 125.57211 * 180.24325 * 22 21 20 37 37 H 1.08999 * 109.47012 * 89.97712 * 24 23 22 38 38 H 1.08999 * 109.46935 * 209.97611 * 24 23 22 39 39 H 1.09001 * 109.47056 * 329.97291 * 24 23 22 40 40 H 1.08001 * 125.80020 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2875 -1.5143 0.6923 6 1 3.4851 -2.4111 1.2795 7 7 4.4676 -0.6471 0.6501 8 6 5.7218 -1.1947 0.6995 9 1 5.8410 -2.2658 0.7699 10 6 6.8399 -0.3731 0.6590 11 7 6.6946 0.9322 0.5727 12 14 8.5508 -1.1200 0.7271 13 1 9.0201 -1.4086 -0.6520 14 1 9.4827 -0.1640 1.3773 15 1 8.5094 -2.3811 1.5100 16 6 2.8098 -1.8825 -0.7370 17 7 2.0299 -0.7141 -1.1840 18 6 1.8073 -0.3620 -2.4657 19 8 1.2289 0.6774 -2.7192 20 6 2.2643 -1.2360 -3.5593 21 6 2.8459 -2.5766 -3.4322 22 6 3.1068 -2.9959 -4.6831 23 7 2.7373 -2.0194 -5.5615 24 6 2.8678 -2.1105 -7.0179 25 6 2.2345 -0.9606 -4.8987 26 1 -0.3634 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5195 -0.8868 29 1 2.3530 -0.0460 2.0200 30 1 1.3039 -1.4437 1.6200 31 1 4.3606 0.3149 0.5872 32 1 7.4759 1.5063 0.5448 33 1 2.1800 -2.7718 -0.7115 34 1 3.6654 -2.0412 -1.3933 35 1 3.0244 -3.1207 -2.5165 36 1 3.5383 -3.9496 -4.9489 37 1 1.9594 -2.5424 -7.4378 38 1 3.0213 -1.1139 -7.4319 39 1 3.7198 -2.7428 -7.2676 40 1 1.8671 -0.0501 -5.3485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988607708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = 39.403114 kcal Electronic energy + Delta-G solvation = -21955.014084 eV Core-core repulsion = 18771.397141 eV Total energy + Delta-G solvation = -3183.616943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.06839 -39.31439 -36.96022 -33.86302 -32.96156 -31.24623 -31.06136 -28.99596 -28.32135 -26.60167 -25.39898 -23.74756 -22.88752 -20.63159 -20.41678 -19.41741 -18.60523 -17.24620 -16.89791 -16.03132 -15.45880 -15.31821 -14.59531 -14.50411 -13.76966 -13.73473 -13.37926 -13.26783 -13.14880 -12.85065 -12.63015 -12.37486 -12.22072 -12.07694 -11.84808 -11.61033 -11.46786 -11.04698 -10.87214 -10.61188 -10.44104 -10.22852 -9.93334 -9.65792 -9.34259 -8.94531 -8.43085 -8.24647 -7.90820 -6.95349 -5.76076 -3.05799 2.06568 2.63633 2.89038 3.43408 3.48101 3.50340 3.69035 4.04265 4.58453 4.62690 4.95505 4.98053 5.05734 5.14449 5.19719 5.28358 5.43771 5.59456 5.62961 5.68436 5.70516 5.80635 5.93391 6.01036 6.08607 6.11805 6.23241 6.33156 6.38033 6.53086 6.56595 6.74672 6.81555 6.92785 7.02759 7.21993 7.33875 7.69374 8.22651 8.41361 8.85933 9.52900 10.09900 10.44434 11.46131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.006302 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.007579 B = 4441.968653 C = 5879.711397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.139 4.139 5 C 0.166 3.834 6 H 0.072 0.928 7 N -0.711 5.711 8 C -0.244 4.244 9 H 0.072 0.928 10 C -0.010 4.010 11 N -0.929 5.929 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.281 1.281 16 C 0.067 3.933 17 N -0.593 5.593 18 C 0.606 3.394 19 O -0.568 6.568 20 C -0.219 4.219 21 C -0.166 4.166 22 C -0.027 4.027 23 N -0.451 5.451 24 C 0.072 3.928 25 C 0.065 3.935 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 -8.581 -9.929 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.178 4.178 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.090 0.910 10 C -0.206 4.206 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.059 4.059 17 N -0.324 5.324 18 C 0.397 3.603 19 O -0.449 6.449 20 C -0.229 4.229 21 C -0.190 4.190 22 C -0.153 4.153 23 N -0.127 5.127 24 C -0.070 4.070 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.631 -8.156 -10.449 16.992 hybrid contribution 1.092 -0.090 -0.170 1.109 sum -9.539 -8.247 -10.619 16.486 Atomic orbital electron populations 1.22122 0.95684 1.01592 1.02212 1.21433 0.93325 0.96802 0.84864 0.90955 1.23075 0.98315 1.00019 0.96427 1.21408 0.86997 0.94285 0.91912 0.90978 1.42320 1.00044 1.05521 1.87117 1.19235 0.83244 0.91969 1.43049 0.90991 1.24754 0.97854 0.95339 1.02682 1.69673 1.28921 1.02155 1.56875 0.86212 0.84678 0.77909 0.77495 1.21793 1.21824 1.20681 1.23688 0.94690 0.86982 1.00587 1.48098 1.51763 1.28366 1.04188 1.16957 0.78289 0.84172 0.80905 1.90700 1.45117 1.25306 1.83790 1.20341 1.12845 0.97199 0.92500 1.22590 1.03933 0.95435 0.97054 1.21748 1.09015 0.95403 0.89116 1.43559 1.48460 1.14001 1.06699 1.22057 1.03103 1.04202 0.77673 1.21682 1.01293 0.92476 0.91520 0.92934 0.92143 0.91832 0.89962 0.90905 0.78005 0.93462 0.92925 0.89322 0.82675 0.81876 0.90979 0.89805 0.89774 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 37.16 0.34 -2.05 16 2 C 0.14 2.46 3.42 -66.95 -0.23 2.23 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.14 -2.27 6.07 -24.90 -0.15 -2.42 16 5 C 0.17 3.18 3.72 -65.66 -0.24 2.93 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -17.49 5.25 -51.23 -0.27 -17.76 16 8 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 9 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 10 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 11 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 12 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.07 1.18 4.84 -2.41 -0.01 1.17 16 17 N -0.59 -11.22 3.06 -164.20 -0.50 -11.72 16 18 C 0.61 12.25 7.58 -12.60 -0.10 12.16 16 19 O -0.57 -12.76 16.17 5.25 0.08 -12.68 16 20 C -0.22 -3.86 6.18 -103.35 -0.64 -4.50 16 21 C -0.17 -2.55 9.25 -37.50 -0.35 -2.89 16 22 C -0.03 -0.34 11.34 -16.83 -0.19 -0.53 16 23 N -0.45 -5.44 3.09 -124.52 -0.38 -5.83 16 24 C 0.07 0.51 11.04 59.85 0.66 1.17 16 25 C 0.07 0.97 11.12 -16.84 -0.19 0.78 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.08 7.07 -51.93 -0.37 0.71 16 29 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 31 H 0.39 10.46 7.86 -40.82 -0.32 10.14 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.05 0.79 7.78 -51.93 -0.40 0.39 16 34 H 0.09 1.73 5.88 -51.93 -0.31 1.43 16 35 H 0.16 2.26 5.16 -52.49 -0.27 1.99 16 36 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 40 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -34.21 329.54 -7.59 -41.80 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.85 Total: 10.66 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.34 Total: 0.92 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.43 Total: -62.85 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.21 -7.59 -41.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988607708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.200 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds