Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99750 * 2 1 4 4 C 1.54316 * 109.88131 * 121.10060 * 2 1 3 5 5 C 1.55151 * 102.94466 * 141.60867 * 4 2 1 6 6 H 1.09000 * 111.00473 * 206.42094 * 5 4 2 7 7 N 1.46507 * 111.00407 * 82.60740 * 5 4 2 8 8 C 1.36937 * 120.00004 * 155.00354 * 7 5 4 9 9 H 1.08008 * 120.00033 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00148 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99775 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00131 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46907 * 89.99662 * 12 10 8 14 14 H 1.48501 * 109.47086 * 209.99957 * 12 10 8 15 15 H 1.48494 * 109.46863 * 330.00059 * 12 10 8 16 16 C 1.55130 * 101.48489 * 324.33127 * 5 4 2 17 17 N 1.47027 * 109.87726 * 238.90531 * 2 1 3 18 18 C 1.34770 * 125.64922 * 61.61031 * 17 2 1 19 19 O 1.21627 * 120.00310 * 5.58757 * 18 17 2 20 20 C 1.47263 * 119.99831 * 185.59563 * 18 17 2 21 21 C 1.46685 * 126.94397 * 6.85172 * 20 18 17 22 22 C 1.34486 * 106.33256 * 179.74370 * 21 20 18 23 23 N 1.36442 * 108.85762 * 0.24298 * 22 21 20 24 24 C 1.46507 * 124.85169 * 180.02562 * 23 22 21 25 25 C 1.34655 * 110.29777 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47594 * 179.64013 * 1 2 3 27 27 H 1.09004 * 109.47072 * 299.64186 * 1 2 3 28 28 H 1.09007 * 109.47036 * 59.63873 * 1 2 3 29 29 H 1.09010 * 110.71675 * 259.96951 * 4 2 1 30 30 H 1.09004 * 110.72426 * 23.06314 * 4 2 1 31 31 H 0.96996 * 120.00073 * 335.00057 * 7 5 4 32 32 H 0.97000 * 119.99710 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.49268 * 278.45271 * 16 5 4 34 34 H 1.08997 * 110.34506 * 156.06168 * 16 5 4 35 35 H 1.07997 * 126.83306 * 0.02562 * 21 20 18 36 36 H 1.08005 * 125.57211 * 180.24325 * 22 21 20 37 37 H 1.08999 * 109.47012 * 89.97712 * 24 23 22 38 38 H 1.08999 * 109.46935 * 209.97611 * 24 23 22 39 39 H 1.09001 * 109.47056 * 329.97291 * 24 23 22 40 40 H 1.08001 * 125.80020 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2875 -1.5143 0.6923 6 1 3.4851 -2.4111 1.2795 7 7 4.4676 -0.6471 0.6501 8 6 5.7218 -1.1947 0.6995 9 1 5.8410 -2.2658 0.7699 10 6 6.8399 -0.3731 0.6590 11 7 6.6946 0.9322 0.5727 12 14 8.5508 -1.1200 0.7271 13 1 9.0201 -1.4086 -0.6520 14 1 9.4827 -0.1640 1.3773 15 1 8.5094 -2.3811 1.5100 16 6 2.8098 -1.8825 -0.7370 17 7 2.0299 -0.7141 -1.1840 18 6 1.8073 -0.3620 -2.4657 19 8 1.2289 0.6774 -2.7192 20 6 2.2643 -1.2360 -3.5593 21 6 2.8459 -2.5766 -3.4322 22 6 3.1068 -2.9959 -4.6831 23 7 2.7373 -2.0194 -5.5615 24 6 2.8678 -2.1105 -7.0179 25 6 2.2345 -0.9606 -4.8987 26 1 -0.3634 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5195 -0.8868 29 1 2.3530 -0.0460 2.0200 30 1 1.3039 -1.4437 1.6200 31 1 4.3606 0.3149 0.5872 32 1 7.4759 1.5063 0.5448 33 1 2.1800 -2.7718 -0.7115 34 1 3.6654 -2.0412 -1.3933 35 1 3.0244 -3.1207 -2.5165 36 1 3.5383 -3.9496 -4.9489 37 1 1.9594 -2.5424 -7.4378 38 1 3.0213 -1.1139 -7.4319 39 1 3.7198 -2.7428 -7.2676 40 1 1.8671 -0.0501 -5.3485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988607708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 16.729052 kcal Electronic energy + Delta-G solvation = -21955.997305 eV Core-core repulsion = 18771.397141 eV Total energy + Delta-G solvation = -3184.600164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15494 -40.73485 -38.52194 -35.74767 -34.01939 -33.09879 -32.32040 -30.19214 -29.97756 -27.48379 -26.76395 -25.71076 -24.24337 -21.90638 -21.73801 -20.67197 -19.89641 -19.23277 -18.11105 -17.54607 -16.82816 -16.41288 -16.14265 -15.89676 -15.39310 -15.25314 -14.86551 -14.64150 -14.42668 -14.12395 -13.76619 -13.49147 -13.24953 -13.19760 -13.14154 -12.98538 -12.86890 -12.81550 -12.65335 -12.19726 -12.14089 -11.90249 -11.60819 -11.44730 -11.00504 -10.79566 -9.66860 -9.45351 -9.21500 -8.91675 -7.90432 -5.19394 0.81235 1.49127 1.50842 1.56298 1.59246 1.94672 2.34382 2.58686 2.64347 3.41067 3.64924 3.91670 3.98938 4.01931 4.06316 4.10133 4.17878 4.34705 4.41866 4.48037 4.51756 4.63611 4.73317 4.73692 4.79868 4.81819 4.98953 5.05358 5.08966 5.15537 5.22723 5.27863 5.39257 5.57543 5.64744 5.79701 6.11056 6.30216 6.40353 6.75693 7.35529 7.36824 8.11724 8.34457 9.33565 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.006302 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.007579 B = 4441.968653 C = 5879.711397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.035 0.965 4 C -0.123 4.123 5 C 0.154 3.846 6 H 0.091 0.909 7 N -0.726 5.726 8 C -0.233 4.233 9 H 0.087 0.913 10 C -0.080 4.080 11 N -0.975 5.975 12 Si 0.972 3.028 13 H -0.292 1.292 14 H -0.302 1.302 15 H -0.261 1.261 16 C 0.079 3.921 17 N -0.597 5.597 18 C 0.592 3.408 19 O -0.607 6.607 20 C -0.264 4.264 21 C -0.192 4.192 22 C -0.011 4.011 23 N -0.443 5.443 24 C 0.062 3.938 25 C 0.062 3.938 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.368 0.632 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.203 0.797 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 -11.743 -10.703 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.161 4.161 5 C 0.044 3.956 6 H 0.109 0.891 7 N -0.363 5.363 8 C -0.364 4.364 9 H 0.105 0.895 10 C -0.271 4.271 11 N -0.626 5.626 12 Si 0.801 3.199 13 H -0.220 1.220 14 H -0.229 1.229 15 H -0.186 1.186 16 C -0.046 4.046 17 N -0.328 5.328 18 C 0.385 3.615 19 O -0.492 6.492 20 C -0.274 4.274 21 C -0.215 4.215 22 C -0.138 4.138 23 N -0.117 5.117 24 C -0.078 4.078 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.199 0.801 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.175 0.825 36 H 0.220 0.780 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.021 -11.406 -11.227 19.432 hybrid contribution 1.127 0.839 -0.013 1.405 sum -9.895 -10.567 -11.239 18.327 Atomic orbital electron populations 1.22006 0.93421 1.02668 1.02192 1.21533 0.95117 0.95162 0.85337 0.94666 1.23001 0.97778 1.00048 0.95300 1.21749 0.86193 0.94446 0.93190 0.89087 1.42539 1.01214 1.05276 1.87310 1.19722 0.84195 0.92585 1.39936 0.89474 1.25579 1.01761 0.95706 1.04087 1.69859 1.29260 1.03693 1.59789 0.85157 0.79957 0.77504 0.77268 1.21959 1.22893 1.18569 1.23569 0.94627 0.87780 0.98646 1.48233 1.51617 1.28690 1.04254 1.17539 0.77929 0.84184 0.81884 1.90650 1.47078 1.27033 1.84419 1.20432 1.15610 0.98512 0.92857 1.22684 1.05422 0.94808 0.98620 1.22310 1.06902 0.96313 0.88254 1.43905 1.46410 1.12702 1.08688 1.22451 1.05168 1.05669 0.74468 1.21823 1.01009 0.93500 0.91145 0.91129 0.89778 0.94257 0.90698 0.86839 0.80105 0.94395 0.89246 0.91253 0.82507 0.77983 0.88920 0.88845 0.87508 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.10 71.98 0.66 -3.62 16 2 C 0.13 4.70 3.42 45.34 0.16 4.86 16 3 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -3.81 6.07 31.78 0.19 -3.62 16 5 C 0.15 5.69 3.72 46.46 0.17 5.86 16 6 H 0.09 3.04 8.09 -2.39 -0.02 3.02 16 7 N -0.73 -36.03 5.25 -316.00 -1.66 -37.69 16 8 C -0.23 -12.52 9.96 84.03 0.84 -11.69 16 9 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 10 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 11 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 12 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 C 0.08 2.71 4.84 86.93 0.42 3.13 16 17 N -0.60 -22.90 3.06 -791.64 -2.43 -25.33 16 18 C 0.59 24.83 7.58 86.62 0.66 25.48 16 19 O -0.61 -28.82 16.17 -4.12 -0.07 -28.89 16 20 C -0.26 -9.41 6.18 -19.04 -0.12 -9.52 16 21 C -0.19 -5.67 9.25 23.62 0.22 -5.45 16 22 C -0.01 -0.24 11.34 83.12 0.94 0.70 16 23 N -0.44 -9.63 3.09 -547.88 -1.69 -11.33 16 24 C 0.06 0.67 11.04 127.77 1.41 2.08 16 25 C 0.06 1.84 11.12 83.92 0.93 2.77 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 1.35 7.07 -2.38 -0.02 1.33 16 29 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.11 2.64 7.85 -2.39 -0.02 2.62 16 31 H 0.37 20.70 7.86 -92.71 -0.73 19.97 16 32 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.09 2.44 7.78 -2.38 -0.02 2.42 16 34 H 0.07 2.69 5.88 -2.39 -0.01 2.67 16 35 H 0.16 4.37 5.16 -2.91 -0.02 4.35 16 36 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.86 8.13 -2.39 -0.02 0.85 16 39 H 0.11 0.72 8.13 -2.39 -0.02 0.70 16 40 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -78.05 329.54 3.73 -74.32 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.31 Total: 35.04 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.94 Total: 6.88 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.49 Total: -135.37 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.07 Total: -28.89 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.05 3.73 -74.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988607708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.052 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds