Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00120 * 2 1 4 4 C 1.54328 * 109.88181 * 238.90929 * 2 1 3 5 5 C 1.55157 * 102.94166 * 262.77715 * 4 2 1 6 6 H 1.09000 * 111.04127 * 82.57971 * 5 4 2 7 7 N 1.46501 * 111.00752 * 206.42639 * 5 4 2 8 8 C 1.36929 * 120.00215 * 198.65022 * 7 5 4 9 9 H 1.07997 * 120.00070 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00217 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99559 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00218 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47072 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47247 * 300.00585 * 12 10 8 15 15 H 1.48507 * 109.46718 * 60.00450 * 12 10 8 16 16 C 1.54916 * 101.58157 * 324.49544 * 5 4 2 17 17 N 1.47022 * 109.88309 * 121.10332 * 2 1 3 18 18 C 1.34780 * 125.64407 * 300.43607 * 17 2 1 19 19 O 1.21631 * 119.99971 * 358.00846 * 18 17 2 20 20 C 1.47263 * 119.99683 * 178.00356 * 18 17 2 21 21 C 1.46682 * 126.94336 * 7.84301 * 20 18 17 22 22 C 1.34491 * 106.33371 * 179.88707 * 21 20 18 23 23 N 1.36442 * 108.85273 * 0.37102 * 22 21 20 24 24 C 1.46503 * 124.85173 * 179.77297 * 23 22 21 25 25 C 1.34657 * 110.30416 * 359.75342 * 23 22 21 26 26 H 1.08998 * 109.46904 * 300.35329 * 1 2 3 27 27 H 1.08997 * 109.47077 * 60.35587 * 1 2 3 28 28 H 1.09007 * 109.47050 * 180.35414 * 1 2 3 29 29 H 1.08998 * 110.72446 * 144.41549 * 4 2 1 30 30 H 1.09001 * 110.71960 * 21.13475 * 4 2 1 31 31 H 0.97004 * 119.99330 * 18.64275 * 7 5 4 32 32 H 0.96993 * 119.99972 * 359.97438 * 11 10 8 33 33 H 1.09003 * 110.36625 * 155.84795 * 16 5 4 34 34 H 1.08995 * 110.37037 * 278.17142 * 16 5 4 35 35 H 1.08002 * 126.83570 * 359.97438 * 21 20 18 36 36 H 1.07994 * 125.57430 * 180.08890 * 22 21 20 37 37 H 1.09001 * 109.47058 * 269.97542 * 24 23 22 38 38 H 1.09004 * 109.46948 * 29.97636 * 24 23 22 39 39 H 1.09001 * 109.47601 * 149.97580 * 24 23 22 40 40 H 1.07995 * 125.80924 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 6 2.3518 -2.1695 -0.6926 6 1 1.4455 -2.7742 -0.6605 7 7 3.3937 -2.8312 -1.4818 8 6 3.5388 -4.1914 -1.4207 9 1 2.8854 -4.7764 -0.7904 10 6 4.5256 -4.8185 -2.1689 11 7 5.3222 -4.1055 -2.9368 12 14 4.7240 -6.6740 -2.0850 13 1 5.8405 -7.0930 -2.9700 14 1 5.0228 -7.0772 -0.6874 15 1 3.4668 -7.3269 -2.5306 16 6 2.8568 -1.8499 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7754 -0.3847 2.4657 19 8 1.1070 0.5993 2.7193 20 6 2.3064 -1.2161 3.5590 21 6 3.2521 -2.3309 3.4394 22 6 3.4544 -2.7908 4.6870 23 7 2.7038 -2.0536 5.5557 24 6 2.6565 -2.2605 7.0053 25 6 2.0129 -1.1084 4.8906 26 1 -0.3633 0.5193 0.8868 27 1 -0.3633 0.5083 -0.8931 28 1 -0.3633 -1.0277 0.0064 29 1 2.9657 -0.2831 -1.6183 30 1 1.2917 -0.7889 -2.0201 31 1 3.9806 -2.3057 -2.0478 32 1 5.2194 -3.1420 -2.9800 33 1 2.7088 -2.7082 1.3920 34 1 3.9091 -1.5669 0.7127 35 1 3.6983 -2.7068 2.5305 36 1 4.1014 -3.6124 4.9565 37 1 1.8625 -2.9674 7.2457 38 1 3.6124 -2.6577 7.3469 39 1 2.4597 -1.3103 7.5018 40 1 1.3415 -0.3875 5.3332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988607711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 42.366833 kcal Electronic energy + Delta-G solvation = -21721.723849 eV Core-core repulsion = 18538.235422 eV Total energy + Delta-G solvation = -3183.488427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20965 -39.50088 -37.15207 -34.39921 -33.11932 -31.39846 -31.15154 -29.12060 -28.02028 -26.72321 -25.49402 -23.81130 -22.82746 -20.76236 -20.75077 -19.55828 -18.77546 -17.46760 -17.14914 -16.03909 -15.57584 -15.27461 -15.11712 -14.41930 -14.11314 -13.77542 -13.61768 -13.40903 -13.21281 -12.96555 -12.92155 -12.51248 -12.41102 -12.19935 -11.96231 -11.77850 -11.67367 -10.89539 -10.85023 -10.61134 -10.41368 -10.13402 -10.00120 -9.55333 -9.20802 -8.96408 -8.56314 -8.40322 -8.08956 -7.11675 -6.14922 -3.16701 1.89800 2.52215 2.76674 3.46010 3.50250 3.52958 3.70556 3.83049 4.51962 4.62988 4.86084 4.86403 4.90919 5.02964 5.10697 5.19987 5.28504 5.41669 5.50327 5.58367 5.64075 5.68474 5.89119 5.89999 5.99624 6.02724 6.07524 6.23925 6.26413 6.32825 6.48044 6.57930 6.76597 6.81941 6.88379 7.08636 7.21800 7.76664 8.00096 8.63568 8.70762 9.15443 10.02038 10.16141 11.33049 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.005440 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.967208 B = 5145.368364 C = 6767.854794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.069 0.931 4 C -0.138 4.138 5 C 0.176 3.824 6 H 0.064 0.936 7 N -0.725 5.725 8 C -0.337 4.337 9 H 0.066 0.934 10 C -0.040 4.040 11 N -0.941 5.941 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C 0.068 3.932 17 N -0.603 5.603 18 C 0.604 3.396 19 O -0.567 6.567 20 C -0.226 4.226 21 C -0.171 4.171 22 C -0.024 4.024 23 N -0.450 5.450 24 C 0.071 3.929 25 C 0.066 3.934 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.370 0.630 32 H 0.256 0.744 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 4.653 16.128 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.177 4.177 5 C 0.065 3.935 6 H 0.082 0.918 7 N -0.366 5.366 8 C -0.467 4.467 9 H 0.084 0.916 10 C -0.238 4.238 11 N -0.586 5.586 12 Si 0.909 3.091 13 H -0.210 1.210 14 H -0.222 1.222 15 H -0.222 1.222 16 C -0.057 4.057 17 N -0.336 5.336 18 C 0.396 3.604 19 O -0.449 6.449 20 C -0.236 4.236 21 C -0.195 4.195 22 C -0.150 4.150 23 N -0.126 5.126 24 C -0.071 4.071 25 C -0.069 4.069 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.204 0.796 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.623 3.640 16.210 17.540 hybrid contribution -0.621 1.356 0.544 1.588 sum -6.244 4.996 16.754 18.565 Atomic orbital electron populations 1.22125 0.95113 1.02231 1.02331 1.21436 0.94337 0.95863 0.84675 0.91332 1.22992 1.01528 0.97089 0.96076 1.21262 0.92458 0.90963 0.88859 0.91795 1.42324 1.37455 1.05017 1.51848 1.20043 1.17066 0.83348 1.26278 0.91557 1.25769 0.94830 1.06726 0.96521 1.70887 1.39987 1.07101 1.40612 0.83260 0.75919 0.74159 0.75715 1.21041 1.22198 1.22212 1.23781 0.94650 0.88006 0.99297 1.48328 1.50330 1.30637 1.04291 1.17030 0.79094 0.83444 0.80867 1.90700 1.41905 1.28444 1.83801 1.20322 1.07577 1.03005 0.92701 1.22861 1.01415 0.97680 0.97532 1.21840 1.02451 1.01331 0.89349 1.43610 1.35219 1.26519 1.07299 1.22077 1.03836 1.03432 0.77771 1.21671 0.99111 0.94671 0.91448 0.91445 0.92087 0.92502 0.90834 0.90236 0.79644 0.93292 0.89762 0.91540 0.81909 0.81629 0.90821 0.89686 0.89821 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.06 37.16 0.34 -2.04 16 2 C 0.14 2.28 3.48 -66.95 -0.23 2.04 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.14 -2.28 6.12 -24.89 -0.15 -2.43 16 5 C 0.18 3.45 3.69 -65.78 -0.24 3.21 16 6 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 7 N -0.72 -17.33 5.27 -51.35 -0.27 -17.60 16 8 C -0.34 -9.04 9.98 -15.06 -0.15 -9.19 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 11 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 12 Si 1.08 25.11 29.92 -169.99 -5.09 20.03 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 16 C 0.07 1.24 5.02 -2.53 -0.01 1.23 16 17 N -0.60 -10.60 3.08 -164.33 -0.51 -11.10 16 18 C 0.60 11.04 7.60 -12.59 -0.10 10.94 16 19 O -0.57 -11.40 15.89 5.25 0.08 -11.31 16 20 C -0.23 -3.64 6.20 -103.35 -0.64 -4.29 16 21 C -0.17 -2.57 9.27 -37.50 -0.35 -2.92 16 22 C -0.02 -0.29 11.34 -16.83 -0.19 -0.48 16 23 N -0.45 -4.93 3.09 -124.53 -0.38 -5.31 16 24 C 0.07 0.43 11.03 59.85 0.66 1.09 16 25 C 0.07 0.87 11.13 -16.84 -0.19 0.69 16 26 H 0.07 1.09 6.80 -51.93 -0.35 0.74 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 30 H 0.08 1.22 7.83 -51.93 -0.41 0.81 16 31 H 0.37 9.12 6.54 -40.82 -0.27 8.85 16 32 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 33 H 0.08 1.54 5.15 -51.93 -0.27 1.27 16 34 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.16 2.58 5.07 -52.49 -0.27 2.31 16 36 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 39 H 0.08 0.39 8.13 -51.93 -0.42 -0.04 16 40 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -33.30 326.85 -7.51 -40.81 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.68 Total: 10.43 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.35 Total: -3.38 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.40 Total: -61.50 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.30 -7.51 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988607711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.178 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds