Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00120 * 2 1 4 4 C 1.54328 * 109.88181 * 238.90929 * 2 1 3 5 5 C 1.55157 * 102.94166 * 262.77715 * 4 2 1 6 6 H 1.09000 * 111.04127 * 82.57971 * 5 4 2 7 7 N 1.46501 * 111.00752 * 206.42639 * 5 4 2 8 8 C 1.36929 * 120.00215 * 198.65022 * 7 5 4 9 9 H 1.07997 * 120.00070 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00217 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99559 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00218 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47072 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47247 * 300.00585 * 12 10 8 15 15 H 1.48507 * 109.46718 * 60.00450 * 12 10 8 16 16 C 1.54916 * 101.58157 * 324.49544 * 5 4 2 17 17 N 1.47022 * 109.88309 * 121.10332 * 2 1 3 18 18 C 1.34780 * 125.64407 * 300.43607 * 17 2 1 19 19 O 1.21631 * 119.99971 * 358.00846 * 18 17 2 20 20 C 1.47263 * 119.99683 * 178.00356 * 18 17 2 21 21 C 1.46682 * 126.94336 * 7.84301 * 20 18 17 22 22 C 1.34491 * 106.33371 * 179.88707 * 21 20 18 23 23 N 1.36442 * 108.85273 * 0.37102 * 22 21 20 24 24 C 1.46503 * 124.85173 * 179.77297 * 23 22 21 25 25 C 1.34657 * 110.30416 * 359.75342 * 23 22 21 26 26 H 1.08998 * 109.46904 * 300.35329 * 1 2 3 27 27 H 1.08997 * 109.47077 * 60.35587 * 1 2 3 28 28 H 1.09007 * 109.47050 * 180.35414 * 1 2 3 29 29 H 1.08998 * 110.72446 * 144.41549 * 4 2 1 30 30 H 1.09001 * 110.71960 * 21.13475 * 4 2 1 31 31 H 0.97004 * 119.99330 * 18.64275 * 7 5 4 32 32 H 0.96993 * 119.99972 * 359.97438 * 11 10 8 33 33 H 1.09003 * 110.36625 * 155.84795 * 16 5 4 34 34 H 1.08995 * 110.37037 * 278.17142 * 16 5 4 35 35 H 1.08002 * 126.83570 * 359.97438 * 21 20 18 36 36 H 1.07994 * 125.57430 * 180.08890 * 22 21 20 37 37 H 1.09001 * 109.47058 * 269.97542 * 24 23 22 38 38 H 1.09004 * 109.46948 * 29.97636 * 24 23 22 39 39 H 1.09001 * 109.47601 * 149.97580 * 24 23 22 40 40 H 1.07995 * 125.80924 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7494 -1.2428 5 6 2.3518 -2.1695 -0.6926 6 1 1.4455 -2.7742 -0.6605 7 7 3.3937 -2.8312 -1.4818 8 6 3.5388 -4.1914 -1.4207 9 1 2.8854 -4.7764 -0.7904 10 6 4.5256 -4.8185 -2.1689 11 7 5.3222 -4.1055 -2.9368 12 14 4.7240 -6.6740 -2.0850 13 1 5.8405 -7.0930 -2.9700 14 1 5.0228 -7.0772 -0.6874 15 1 3.4668 -7.3269 -2.5306 16 6 2.8568 -1.8499 0.7366 17 7 2.0300 -0.7142 1.1838 18 6 1.7754 -0.3847 2.4657 19 8 1.1070 0.5993 2.7193 20 6 2.3064 -1.2161 3.5590 21 6 3.2521 -2.3309 3.4394 22 6 3.4544 -2.7908 4.6870 23 7 2.7038 -2.0536 5.5557 24 6 2.6565 -2.2605 7.0053 25 6 2.0129 -1.1084 4.8906 26 1 -0.3633 0.5193 0.8868 27 1 -0.3633 0.5083 -0.8931 28 1 -0.3633 -1.0277 0.0064 29 1 2.9657 -0.2831 -1.6183 30 1 1.2917 -0.7889 -2.0201 31 1 3.9806 -2.3057 -2.0478 32 1 5.2194 -3.1420 -2.9800 33 1 2.7088 -2.7082 1.3920 34 1 3.9091 -1.5669 0.7127 35 1 3.6983 -2.7068 2.5305 36 1 4.1014 -3.6124 4.9565 37 1 1.8625 -2.9674 7.2457 38 1 3.6124 -2.6577 7.3469 39 1 2.4597 -1.3103 7.5018 40 1 1.3415 -0.3875 5.3332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988607711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = 21.404462 kcal Electronic energy + Delta-G solvation = -21722.632845 eV Core-core repulsion = 18538.235422 eV Total energy + Delta-G solvation = -3184.397423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23822 -40.86265 -38.65032 -36.27177 -34.12427 -33.16526 -32.42033 -30.18199 -29.72310 -27.53576 -26.87318 -25.70783 -24.22206 -22.20767 -21.90781 -20.74603 -20.00567 -19.45955 -18.28921 -17.43917 -16.86336 -16.54191 -16.19785 -16.07546 -15.61462 -15.39141 -14.92057 -14.70465 -14.48645 -14.38942 -13.89430 -13.72208 -13.35440 -13.28481 -13.10213 -13.04649 -12.91217 -12.69304 -12.62199 -12.15910 -11.91408 -11.81978 -11.65880 -11.18828 -11.04166 -10.80803 -9.76304 -9.53845 -9.27400 -9.11757 -8.34998 -5.31266 0.74820 1.47797 1.63026 1.72123 1.86238 1.88569 2.19374 2.52629 2.74838 3.41136 3.42159 3.78716 3.88588 3.96058 4.00079 4.04998 4.05575 4.26157 4.29181 4.40254 4.42641 4.47278 4.57729 4.67954 4.73028 4.74141 4.84875 4.94008 4.99864 5.08369 5.09669 5.19284 5.31663 5.48858 5.65082 5.72486 6.05950 6.34330 6.53590 6.59052 7.09526 7.24874 7.99603 8.11120 9.16613 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.005440 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.967208 B = 5145.368364 C = 6767.854794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.058 0.942 7 N -0.735 5.735 8 C -0.331 4.331 9 H 0.069 0.931 10 C -0.097 4.097 11 N -0.975 5.975 12 Si 1.124 2.876 13 H -0.296 1.296 14 H -0.276 1.276 15 H -0.279 1.279 16 C 0.087 3.913 17 N -0.606 5.606 18 C 0.598 3.402 19 O -0.592 6.592 20 C -0.268 4.268 21 C -0.203 4.203 22 C -0.009 4.009 23 N -0.441 5.441 24 C 0.061 3.939 25 C 0.076 3.924 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.364 0.636 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.146 0.854 36 H 0.198 0.802 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 3.950 18.263 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.163 4.163 5 C 0.060 3.940 6 H 0.076 0.924 7 N -0.376 5.376 8 C -0.463 4.463 9 H 0.087 0.913 10 C -0.289 4.289 11 N -0.623 5.623 12 Si 0.949 3.051 13 H -0.222 1.222 14 H -0.202 1.202 15 H -0.205 1.205 16 C -0.039 4.039 17 N -0.338 5.338 18 C 0.391 3.609 19 O -0.476 6.476 20 C -0.278 4.278 21 C -0.226 4.226 22 C -0.136 4.136 23 N -0.115 5.115 24 C -0.078 4.078 25 C -0.061 4.061 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.196 0.804 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.163 0.837 36 H 0.214 0.786 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.342 2.952 18.400 19.685 hybrid contribution -0.449 1.623 0.013 1.684 sum -6.791 4.574 18.413 20.152 Atomic orbital electron populations 1.22047 0.93801 1.02071 1.02940 1.21553 0.95372 0.95748 0.83956 0.91065 1.22906 1.02077 0.94780 0.96580 1.21374 0.91012 0.92278 0.89289 0.92408 1.42430 1.38349 1.04365 1.52461 1.20350 1.16183 0.84722 1.24997 0.91316 1.27096 0.94967 1.10295 0.96540 1.70991 1.41752 1.06707 1.42810 0.82671 0.76028 0.69931 0.76430 1.22181 1.20172 1.20532 1.23406 0.93815 0.88382 0.98258 1.48361 1.50248 1.30392 1.04773 1.17442 0.78694 0.83401 0.81333 1.90666 1.43239 1.29580 1.84124 1.20377 1.09703 1.04298 0.93432 1.22748 1.02744 0.98702 0.98447 1.22233 1.01650 1.01136 0.88544 1.43943 1.33426 1.24931 1.09194 1.22481 1.05722 1.05104 0.74507 1.21912 0.98662 0.94875 0.90691 0.92811 0.89475 0.92949 0.90836 0.88603 0.80353 0.94416 0.89827 0.92985 0.83693 0.78550 0.89260 0.87591 0.88069 0.79471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.06 71.98 0.65 -3.69 16 2 C 0.14 4.39 3.48 45.34 0.16 4.55 16 3 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.07 6.12 31.78 0.19 -3.87 16 5 C 0.17 6.74 3.69 46.39 0.17 6.91 16 6 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 7 N -0.73 -35.64 5.27 -316.37 -1.67 -37.31 16 8 C -0.33 -17.87 9.98 84.04 0.84 -17.03 16 9 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 10 C -0.10 -5.47 5.50 84.86 0.47 -5.00 16 11 N -0.97 -59.52 13.70 21.65 0.30 -59.23 16 12 Si 1.12 50.36 29.92 68.60 2.05 52.42 16 13 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 14 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.09 3.25 5.02 86.86 0.44 3.69 16 17 N -0.61 -21.57 3.08 -792.05 -2.44 -24.00 16 18 C 0.60 22.13 7.60 86.62 0.66 22.79 16 19 O -0.59 -24.01 15.89 -4.13 -0.07 -24.08 16 20 C -0.27 -8.62 6.20 -19.04 -0.12 -8.74 16 21 C -0.20 -6.07 9.27 23.62 0.22 -5.85 16 22 C -0.01 -0.19 11.34 83.12 0.94 0.75 16 23 N -0.44 -8.41 3.09 -547.89 -1.69 -10.10 16 24 C 0.06 0.50 11.03 127.77 1.41 1.91 16 25 C 0.08 1.89 11.13 83.92 0.93 2.83 16 26 H 0.05 1.71 6.80 -2.39 -0.02 1.69 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 30 H 0.10 2.81 7.83 -2.39 -0.02 2.79 16 31 H 0.36 18.40 6.54 -92.71 -0.61 17.80 16 32 H 0.25 14.89 6.77 -92.71 -0.63 14.27 16 33 H 0.08 3.14 5.15 -2.39 -0.01 3.13 16 34 H 0.05 2.08 8.08 -2.39 -0.02 2.06 16 35 H 0.15 4.75 5.07 -2.91 -0.01 4.73 16 36 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.48 8.13 -2.38 -0.02 0.46 16 39 H 0.10 0.52 8.13 -2.39 -0.02 0.50 16 40 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -72.79 326.85 4.03 -68.76 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.58 Total: 34.31 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.96 Total: -0.77 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.50 Total: -130.64 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.42 kcal Total: -72.79 4.03 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988607711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.167 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds