Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.70539 * 2 1 4 4 C 1.53189 * 109.58980 * 239.64181 * 2 1 3 5 5 H 1.09005 * 109.49765 * 305.56310 * 4 2 1 6 6 N 1.46502 * 109.49877 * 65.62559 * 4 2 1 7 7 C 1.34773 * 120.00048 * 204.72272 * 6 4 2 8 8 O 1.21689 * 120.00105 * 0.28320 * 7 6 4 9 9 C 1.46682 * 119.99641 * 180.27301 * 7 6 4 10 10 C 1.37877 * 126.23129 * 180.02562 * 9 7 6 11 11 C 1.39829 * 107.08495 * 179.97438 * 10 9 7 12 12 C 1.35455 * 107.86418 * 359.97438 * 11 10 9 13 13 N 1.35527 * 108.87289 * 359.77442 * 12 11 10 14 14 H 0.97001 * 125.67867 * 180.26665 * 13 12 11 15 15 C 1.53041 * 109.31538 * 185.58123 * 4 2 1 16 16 C 1.53040 * 109.53823 * 61.36095 * 15 4 2 17 17 C 1.53184 * 109.31697 * 298.63743 * 16 15 4 18 18 N 1.46926 * 108.77400 * 54.63573 * 17 16 15 19 19 C 1.36937 * 120.63334 * 126.41512 * 18 17 16 20 20 H 1.07998 * 120.00017 * 209.03584 * 19 18 17 21 21 C 1.38812 * 119.99913 * 29.03362 * 19 18 17 22 22 N 1.31621 * 119.99789 * 15.05049 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 195.05634 * 21 19 18 24 24 H 1.48501 * 109.47121 * 59.99826 * 23 21 19 25 25 H 1.48499 * 109.46930 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46813 * 299.99735 * 23 21 19 27 27 H 1.08999 * 109.46808 * 180.35357 * 1 2 3 28 28 H 1.08992 * 109.47420 * 300.35733 * 1 2 3 29 29 H 1.08999 * 109.46833 * 60.36243 * 1 2 3 30 30 H 0.97005 * 119.99563 * 25.00572 * 6 4 2 31 31 H 1.08006 * 126.45584 * 359.97438 * 10 9 7 32 32 H 1.07997 * 126.06765 * 179.97438 * 11 10 9 33 33 H 1.08002 * 125.56119 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.45873 * 181.38725 * 15 4 2 35 35 H 1.09007 * 109.45714 * 301.34364 * 15 4 2 36 36 H 1.09002 * 109.49248 * 178.68247 * 16 15 4 37 37 H 1.09002 * 109.52265 * 58.60823 * 16 15 4 38 38 H 1.08999 * 109.58759 * 294.84888 * 17 16 15 39 39 H 1.08995 * 109.70749 * 174.49266 * 17 16 15 40 40 H 0.97007 * 119.99807 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0266 -2.4435 7 6 1.5528 -0.6041 -3.6287 8 8 1.7512 -1.8024 -3.7027 9 6 1.1852 0.1540 -4.8294 10 6 1.0292 -0.3577 -6.1002 11 6 0.6777 0.7096 -6.9325 12 6 0.6257 1.8296 -6.1724 13 7 0.9269 1.5046 -4.8916 14 1 0.9572 2.1214 -4.1436 15 6 3.5676 -0.8481 -1.1700 16 6 3.9569 -1.6657 0.0637 17 6 3.4650 -0.9469 1.3239 18 7 2.0225 -0.6996 1.1946 19 6 1.1537 -1.1126 2.1690 20 1 0.1360 -1.3675 1.9124 21 6 1.5809 -1.2038 3.4866 22 7 2.7037 -0.6247 3.8559 23 14 0.5624 -2.1486 4.7355 24 1 0.4340 -3.5629 4.3012 25 1 1.2306 -2.0958 6.0606 26 1 -0.7872 -1.5376 4.8374 27 1 -0.3633 -1.0277 0.0063 28 1 -0.3634 0.5193 0.8867 29 1 -0.3633 0.5082 -0.8932 30 1 1.5125 0.9818 -2.3845 31 1 1.1548 -1.3885 -6.3969 32 1 0.4823 0.6512 -7.9930 33 1 0.3801 2.8193 -6.5282 34 1 3.9379 -1.3449 -2.0667 35 1 4.0062 0.1473 -1.0992 36 1 5.0412 -1.7696 0.1039 37 1 3.4988 -2.6531 0.0058 38 1 3.9903 0.0020 1.4318 39 1 3.6520 -1.5696 2.1987 40 1 3.0020 -0.6881 4.7768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993024188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = 26.210177 kcal Electronic energy + Delta-G solvation = -21917.971425 eV Core-core repulsion = 18733.782393 eV Total energy + Delta-G solvation = -3184.189032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32358 -39.32148 -37.50747 -34.38573 -32.63626 -31.79985 -31.10828 -29.85522 -28.65541 -26.23285 -25.04713 -23.25242 -21.60503 -20.77895 -20.48627 -20.10602 -19.68460 -18.52282 -16.46439 -15.81283 -15.61056 -15.13234 -14.88110 -14.04866 -13.97474 -13.82567 -13.77489 -13.50000 -13.29749 -12.83041 -12.69280 -12.55117 -12.40175 -11.73453 -11.57344 -11.15721 -10.93273 -10.78009 -10.61370 -10.33414 -10.18429 -10.06952 -10.01525 -9.67744 -9.41115 -9.14464 -8.78410 -8.48566 -8.30632 -6.70900 -5.81931 -3.26666 1.45638 2.65074 2.96976 3.31201 3.37089 3.42783 3.45188 3.50510 4.46911 4.88331 4.89802 5.22571 5.25656 5.31971 5.37787 5.49072 5.57749 5.76126 5.92853 5.94741 6.03887 6.05187 6.17095 6.29149 6.35861 6.49899 6.56871 6.59808 6.67555 6.72939 6.77767 6.85261 6.93657 7.02818 7.21812 7.38021 7.65380 7.69693 7.78703 8.34408 8.42664 9.17381 9.79845 10.35877 11.26584 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.004125 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.902575 B = 6786.099635 C = 7084.946272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.026 0.974 4 C 0.131 3.869 5 H 0.089 0.911 6 N -0.719 5.719 7 C 0.584 3.416 8 O -0.531 6.531 9 C -0.048 4.048 10 C -0.113 4.113 11 C -0.213 4.213 12 C 0.016 3.984 13 N -0.540 5.540 14 H 0.416 0.584 15 C -0.117 4.117 16 C -0.140 4.140 17 C 0.169 3.831 18 N -0.581 5.581 19 C -0.254 4.254 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.283 1.283 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.389 0.611 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.090 0.910 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 6.433 -16.351 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.368 5.368 7 C 0.371 3.629 8 O -0.407 6.407 9 C -0.162 4.162 10 C -0.140 4.140 11 C -0.238 4.238 12 C -0.120 4.120 13 N -0.136 5.136 14 H 0.253 0.747 15 C -0.156 4.156 16 C -0.180 4.180 17 C 0.043 3.957 18 N -0.305 5.305 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.209 1.209 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.221 0.779 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.186 0.814 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.108 0.892 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.955 5.625 -16.012 17.084 hybrid contribution -0.477 0.442 0.968 1.166 sum -2.432 6.067 -15.044 16.402 Atomic orbital electron populations 1.21818 0.95650 1.01848 1.00078 1.20556 0.93224 0.93484 0.86746 0.95650 1.21839 0.95225 0.96925 0.83428 0.89337 1.46055 1.70519 1.11670 1.08576 1.17079 0.77334 0.86808 0.81700 1.90837 1.50937 1.13774 1.85138 1.20661 1.15578 0.83359 0.96570 1.21326 1.02309 0.99723 0.90624 1.20889 1.10708 0.92253 0.99942 1.22003 1.06230 1.00331 0.83431 1.42066 1.53539 1.08149 1.09843 0.74673 1.21769 0.95258 1.00050 0.98501 1.22183 0.99289 0.99750 0.96775 1.20860 0.82985 0.97236 0.94589 1.44028 1.03199 1.65057 1.18180 1.19138 0.94853 1.38182 0.86180 0.91204 1.25071 0.97806 0.99563 0.96935 1.70012 1.23327 1.44360 1.17001 0.86365 0.79570 0.80255 0.80545 1.20922 1.21627 1.20885 0.92514 0.91719 0.94517 0.77872 0.83605 0.84077 0.81367 0.93064 0.92857 0.92945 0.92430 0.96354 0.89162 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.84 37.16 0.29 -2.20 16 2 C 0.17 3.32 3.03 -67.60 -0.21 3.12 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.37 1.99 -67.81 -0.14 2.24 16 5 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 6 N -0.72 -10.49 4.57 -55.00 -0.25 -10.74 16 7 C 0.58 9.27 7.75 -12.85 -0.10 9.17 16 8 O -0.53 -10.50 16.55 5.20 0.09 -10.41 16 9 C -0.05 -0.63 7.06 -81.98 -0.58 -1.20 16 10 C -0.11 -1.42 10.65 -39.12 -0.42 -1.83 16 11 C -0.21 -2.08 10.81 -39.98 -0.43 -2.51 16 12 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 13 N -0.54 -4.94 5.99 -9.39 -0.06 -5.00 16 14 H 0.42 2.68 8.19 -40.82 -0.33 2.35 16 15 C -0.12 -2.12 5.46 -26.69 -0.15 -2.26 16 16 C -0.14 -2.77 6.08 -26.62 -0.16 -2.93 16 17 C 0.17 3.96 5.29 -3.71 -0.02 3.94 16 18 N -0.58 -14.03 2.99 -164.78 -0.49 -14.53 16 19 C -0.25 -6.71 8.61 -15.06 -0.13 -6.84 16 20 H 0.07 1.80 6.20 -52.49 -0.33 1.48 16 21 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 22 N -0.90 -25.58 11.14 55.49 0.62 -24.96 16 23 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.06 1.10 7.40 -51.93 -0.38 0.72 16 28 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 29 H 0.04 0.55 7.78 -51.93 -0.40 0.14 16 30 H 0.39 4.48 7.73 -40.82 -0.32 4.16 16 31 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -31.73 323.50 -8.38 -40.11 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.81 Total: 5.62 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.32 Total: -1.34 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.18 Total: -55.23 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.73 -8.38 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993024188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.322 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds