Wall clock time and date at job start Mon Mar 30 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.70539 * 2 1 4 4 C 1.53189 * 109.58980 * 239.64181 * 2 1 3 5 5 H 1.09005 * 109.49765 * 305.56310 * 4 2 1 6 6 N 1.46502 * 109.49877 * 65.62559 * 4 2 1 7 7 C 1.34773 * 120.00048 * 204.72272 * 6 4 2 8 8 O 1.21689 * 120.00105 * 0.28320 * 7 6 4 9 9 C 1.46682 * 119.99641 * 180.27301 * 7 6 4 10 10 C 1.37877 * 126.23129 * 180.02562 * 9 7 6 11 11 C 1.39829 * 107.08495 * 179.97438 * 10 9 7 12 12 C 1.35455 * 107.86418 * 359.97438 * 11 10 9 13 13 N 1.35527 * 108.87289 * 359.77442 * 12 11 10 14 14 H 0.97001 * 125.67867 * 180.26665 * 13 12 11 15 15 C 1.53041 * 109.31538 * 185.58123 * 4 2 1 16 16 C 1.53040 * 109.53823 * 61.36095 * 15 4 2 17 17 C 1.53184 * 109.31697 * 298.63743 * 16 15 4 18 18 N 1.46926 * 108.77400 * 54.63573 * 17 16 15 19 19 C 1.36937 * 120.63334 * 126.41512 * 18 17 16 20 20 H 1.07998 * 120.00017 * 209.03584 * 19 18 17 21 21 C 1.38812 * 119.99913 * 29.03362 * 19 18 17 22 22 N 1.31621 * 119.99789 * 15.05049 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 195.05634 * 21 19 18 24 24 H 1.48501 * 109.47121 * 59.99826 * 23 21 19 25 25 H 1.48499 * 109.46930 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46813 * 299.99735 * 23 21 19 27 27 H 1.08999 * 109.46808 * 180.35357 * 1 2 3 28 28 H 1.08992 * 109.47420 * 300.35733 * 1 2 3 29 29 H 1.08999 * 109.46833 * 60.36243 * 1 2 3 30 30 H 0.97005 * 119.99563 * 25.00572 * 6 4 2 31 31 H 1.08006 * 126.45584 * 359.97438 * 10 9 7 32 32 H 1.07997 * 126.06765 * 179.97438 * 11 10 9 33 33 H 1.08002 * 125.56119 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.45873 * 181.38725 * 15 4 2 35 35 H 1.09007 * 109.45714 * 301.34364 * 15 4 2 36 36 H 1.09002 * 109.49248 * 178.68247 * 16 15 4 37 37 H 1.09002 * 109.52265 * 58.60823 * 16 15 4 38 38 H 1.08999 * 109.58759 * 294.84888 * 17 16 15 39 39 H 1.08995 * 109.70749 * 174.49266 * 17 16 15 40 40 H 0.97007 * 119.99807 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0266 -2.4435 7 6 1.5528 -0.6041 -3.6287 8 8 1.7512 -1.8024 -3.7027 9 6 1.1852 0.1540 -4.8294 10 6 1.0292 -0.3577 -6.1002 11 6 0.6777 0.7096 -6.9325 12 6 0.6257 1.8296 -6.1724 13 7 0.9269 1.5046 -4.8916 14 1 0.9572 2.1214 -4.1436 15 6 3.5676 -0.8481 -1.1700 16 6 3.9569 -1.6657 0.0637 17 6 3.4650 -0.9469 1.3239 18 7 2.0225 -0.6996 1.1946 19 6 1.1537 -1.1126 2.1690 20 1 0.1360 -1.3675 1.9124 21 6 1.5809 -1.2038 3.4866 22 7 2.7037 -0.6247 3.8559 23 14 0.5624 -2.1486 4.7355 24 1 0.4340 -3.5629 4.3012 25 1 1.2306 -2.0958 6.0606 26 1 -0.7872 -1.5376 4.8374 27 1 -0.3633 -1.0277 0.0063 28 1 -0.3634 0.5193 0.8867 29 1 -0.3633 0.5082 -0.8932 30 1 1.5125 0.9818 -2.3845 31 1 1.1548 -1.3885 -6.3969 32 1 0.4823 0.6512 -7.9930 33 1 0.3801 2.8193 -6.5282 34 1 3.9379 -1.3449 -2.0667 35 1 4.0062 0.1473 -1.0992 36 1 5.0412 -1.7696 0.1039 37 1 3.4988 -2.6531 0.0058 38 1 3.9903 0.0020 1.4318 39 1 3.6520 -1.5696 2.1987 40 1 3.0020 -0.6881 4.7768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993024188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:06 Heat of formation + Delta-G solvation = 5.010060 kcal Electronic energy + Delta-G solvation = -21918.890731 eV Core-core repulsion = 18733.782393 eV Total energy + Delta-G solvation = -3185.108338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.19349 -40.64999 -39.05817 -35.96831 -34.32091 -33.47811 -32.01346 -31.27994 -29.84267 -27.84850 -26.88757 -24.61039 -22.97394 -22.38390 -21.38959 -21.30726 -20.92787 -19.77371 -18.28380 -17.33396 -16.79970 -16.63908 -16.24514 -15.63275 -15.53663 -15.15842 -14.97150 -14.76913 -14.52001 -14.38605 -14.25945 -13.55944 -13.36853 -13.26917 -13.13104 -12.81227 -12.73404 -12.56017 -12.40683 -12.03544 -11.87344 -11.80757 -11.66967 -11.28339 -11.07211 -10.53086 -10.14505 -9.92384 -9.15112 -8.67157 -7.86526 -5.32743 0.49818 1.46592 1.49680 1.55340 1.88485 2.03497 2.28302 2.39767 2.53408 3.29099 3.59500 3.81153 3.94398 4.03756 4.17917 4.32917 4.37252 4.44995 4.48362 4.56242 4.58356 4.74244 4.85381 4.88317 5.00757 5.10677 5.14272 5.17201 5.24466 5.31436 5.40943 5.44475 5.56945 5.69032 5.75109 5.78679 5.96024 6.40628 6.49077 6.65119 7.14269 7.17626 7.85211 8.36482 9.20208 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.004125 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.902575 B = 6786.099635 C = 7084.946272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.166 3.834 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.058 0.942 6 N -0.705 5.705 7 C 0.585 3.415 8 O -0.580 6.580 9 C -0.080 4.080 10 C -0.128 4.128 11 C -0.229 4.229 12 C 0.047 3.953 13 N -0.528 5.528 14 H 0.430 0.570 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.175 3.825 18 N -0.600 5.600 19 C -0.257 4.257 20 H 0.072 0.928 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.961 3.039 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.274 1.274 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.407 0.593 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.216 0.784 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.005 0.995 39 H 0.057 0.943 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 8.529 -18.416 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.059 3.941 3 H 0.054 0.946 4 C 0.041 3.959 5 H 0.076 0.924 6 N -0.356 5.356 7 C 0.374 3.626 8 O -0.460 6.460 9 C -0.193 4.193 10 C -0.155 4.155 11 C -0.253 4.253 12 C -0.090 4.090 13 N -0.125 5.125 14 H 0.270 0.730 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.050 3.950 18 N -0.324 5.324 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.221 1.221 26 H -0.200 1.200 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.243 0.757 31 H 0.151 0.849 32 H 0.180 0.820 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.023 0.977 39 H 0.075 0.925 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.945 7.768 -18.089 19.905 hybrid contribution -0.204 -0.142 1.466 1.487 sum -3.149 7.626 -16.622 18.557 Atomic orbital electron populations 1.21729 0.94443 1.01099 1.01250 1.20711 0.94261 0.93520 0.85628 0.94626 1.21349 0.94973 0.95586 0.84037 0.92420 1.45746 1.70246 1.12318 1.07261 1.17448 0.76262 0.86395 0.82446 1.90808 1.53248 1.16026 1.85905 1.20142 1.18864 0.85088 0.95253 1.21515 1.02408 1.00192 0.91390 1.21211 1.11157 0.91832 1.01078 1.22762 1.02337 1.01653 0.82253 1.42053 1.52602 1.06813 1.11008 0.72999 1.21689 0.95263 1.00415 0.97447 1.22026 1.00385 0.98739 0.95814 1.20652 0.83113 0.96220 0.95030 1.44260 1.03181 1.65885 1.19057 1.19424 0.95197 1.37296 0.86798 0.91045 1.25742 0.98998 1.00801 0.98639 1.70152 1.24872 1.45959 1.16881 0.85440 0.78490 0.78927 0.78186 1.20930 1.22053 1.19980 0.94162 0.93021 0.90820 0.75715 0.84926 0.81997 0.76771 0.92834 0.91423 0.90856 0.93806 0.97657 0.92496 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.84 71.98 0.56 -3.97 16 2 C 0.17 6.44 3.03 44.97 0.14 6.58 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 5.24 1.99 45.07 0.09 5.33 16 5 H 0.06 2.46 7.58 -2.38 -0.02 2.44 16 6 N -0.71 -19.52 4.57 -446.13 -2.04 -21.56 16 7 C 0.59 18.21 7.75 86.45 0.67 18.88 16 8 O -0.58 -23.43 16.55 -4.31 -0.07 -23.50 16 9 C -0.08 -1.95 7.06 40.35 0.28 -1.67 16 10 C -0.13 -3.05 10.65 22.57 0.24 -2.81 16 11 C -0.23 -3.74 10.81 22.01 0.24 -3.50 16 12 C 0.05 0.54 11.89 83.48 0.99 1.53 16 13 N -0.53 -7.73 5.99 -183.62 -1.10 -8.83 16 14 H 0.43 3.73 8.19 -92.71 -0.76 2.97 16 15 C -0.11 -3.87 5.46 30.62 0.17 -3.70 16 16 C -0.13 -5.15 6.08 30.67 0.19 -4.97 16 17 C 0.18 8.42 5.29 86.36 0.46 8.88 16 18 N -0.60 -29.31 2.99 -675.24 -2.02 -31.33 16 19 C -0.26 -13.76 8.61 84.03 0.72 -13.04 16 20 H 0.07 3.73 6.20 -2.91 -0.02 3.71 16 21 C -0.05 -2.55 4.96 84.86 0.42 -2.12 16 22 N -0.93 -54.16 11.14 21.65 0.24 -53.91 16 23 Si 0.96 44.66 29.58 68.60 2.03 46.69 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 H 0.04 1.55 7.40 -2.39 -0.02 1.53 16 28 H 0.05 1.96 7.66 -2.39 -0.02 1.94 16 29 H 0.07 2.03 7.78 -2.39 -0.02 2.01 16 30 H 0.41 8.25 7.73 -92.70 -0.72 7.53 16 31 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.06 3.11 6.06 -2.39 -0.01 3.09 16 40 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -71.46 323.50 1.79 -69.67 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.42 Total: 17.36 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.17 Total: 5.42 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.92 Total: -115.64 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.07 Total: -23.50 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.46 1.79 -69.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993024188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.680 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds