Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.70566 * 2 1 4 4 C 1.53626 * 109.66224 * 120.59878 * 2 1 3 5 5 H 1.08996 * 109.45884 * 294.42884 * 4 2 1 6 6 N 1.46502 * 109.63760 * 54.55350 * 4 2 1 7 7 C 1.34777 * 120.00134 * 204.83490 * 6 4 2 8 8 O 1.21692 * 119.99805 * 0.02562 * 7 6 4 9 9 C 1.46669 * 119.99921 * 179.97438 * 7 6 4 10 10 C 1.37871 * 126.23265 * 180.02562 * 9 7 6 11 11 C 1.39837 * 107.08831 * 179.97438 * 10 9 7 12 12 C 1.35452 * 107.86315 * 0.02562 * 11 10 9 13 13 N 1.35539 * 108.87071 * 359.76686 * 12 11 10 14 14 H 0.97003 * 125.67622 * 180.26557 * 13 12 11 15 15 C 1.53042 * 109.24163 * 174.54449 * 4 2 1 16 16 C 1.53040 * 109.53577 * 298.50901 * 15 4 2 17 17 C 1.53188 * 109.31368 * 61.36819 * 16 15 4 18 18 N 1.46927 * 108.77455 * 305.36227 * 17 16 15 19 19 C 1.36936 * 120.63108 * 233.58941 * 18 17 16 20 20 H 1.08004 * 120.00259 * 151.11722 * 19 18 17 21 21 C 1.38810 * 119.99982 * 331.11292 * 19 18 17 22 22 N 1.31616 * 120.00200 * 343.75142 * 21 19 18 23 23 Si 1.86807 * 119.99986 * 163.74361 * 21 19 18 24 24 H 1.48494 * 109.47234 * 84.98632 * 23 21 19 25 25 H 1.48500 * 109.46836 * 324.98462 * 23 21 19 26 26 H 1.48504 * 109.47145 * 204.98739 * 23 21 19 27 27 H 1.08996 * 109.47302 * 180.35445 * 1 2 3 28 28 H 1.09001 * 109.46655 * 300.35682 * 1 2 3 29 29 H 1.08995 * 109.46879 * 60.34878 * 1 2 3 30 30 H 0.97002 * 119.99865 * 24.83213 * 6 4 2 31 31 H 1.07996 * 126.46146 * 359.92651 * 10 9 7 32 32 H 1.08003 * 126.07254 * 180.02562 * 11 10 9 33 33 H 1.08002 * 125.56582 * 180.02562 * 12 11 10 34 34 H 1.08996 * 109.46207 * 178.48805 * 15 4 2 35 35 H 1.09000 * 109.45894 * 58.52597 * 15 4 2 36 36 H 1.08994 * 109.49812 * 301.41119 * 16 15 4 37 37 H 1.09002 * 109.52238 * 181.32668 * 16 15 4 38 38 H 1.09001 * 109.59108 * 185.57403 * 17 16 15 39 39 H 1.09003 * 109.59182 * 65.14719 * 17 16 15 40 40 H 0.97002 * 120.00677 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0470 -0.7364 1.2452 5 1 1.7689 -0.1778 2.1389 6 7 1.4591 -2.0770 1.3039 7 6 1.3427 -2.7106 2.4877 8 8 1.7255 -2.1689 3.5080 9 6 0.7536 -4.0525 2.5465 10 6 0.5728 -4.8141 3.6814 11 6 -0.0188 -6.0159 3.2799 12 6 -0.1848 -5.9688 1.9364 13 7 0.2761 -4.7789 1.4792 14 1 0.2715 -4.4883 0.5538 15 6 3.5712 -0.8500 1.1675 16 6 3.9614 -1.6630 -0.0690 17 6 3.4656 -0.9421 -1.3264 18 7 2.0225 -0.6995 -1.1945 19 6 1.1537 -1.1126 -2.1690 20 1 0.1364 -1.3690 -1.9122 21 6 1.5803 -1.2017 -3.4869 22 7 2.6898 -0.6010 -3.8615 23 14 0.5797 -2.1744 -4.7288 24 1 -0.4941 -1.3119 -5.2838 25 1 -0.0279 -3.3532 -4.0605 26 1 1.4658 -2.6316 -5.8293 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5084 -0.8931 30 1 1.1536 -2.5086 0.4907 31 1 0.8386 -4.5356 4.6904 32 1 -0.2944 -6.8362 3.9261 33 1 -0.6179 -6.7499 1.3291 34 1 3.9443 -1.3483 2.0623 35 1 4.0066 0.1469 1.0989 36 1 3.5060 -2.6517 -0.0130 37 1 5.0459 -1.7638 -0.1113 38 1 3.6531 -1.5637 -2.2020 39 1 3.9877 0.0088 -1.4324 40 1 2.9882 -0.6635 -4.7824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993024191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = 25.852011 kcal Electronic energy + Delta-G solvation = -22546.332467 eV Core-core repulsion = 19362.127904 eV Total energy + Delta-G solvation = -3184.204563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14612 -39.32479 -37.42688 -34.02048 -32.51696 -31.84481 -30.90565 -29.84238 -28.67139 -26.30609 -25.08972 -23.12007 -21.74468 -20.80871 -20.51778 -19.92743 -18.78671 -18.67309 -16.50171 -15.77189 -15.29857 -15.03106 -14.90837 -14.09223 -13.93868 -13.87773 -13.58412 -13.34326 -13.00615 -12.99580 -12.61077 -12.57298 -12.25441 -11.90350 -11.33991 -11.29530 -11.06218 -10.78015 -10.69997 -10.59688 -10.20022 -10.08768 -9.78232 -9.69603 -9.36606 -8.97221 -8.66694 -8.55507 -8.12999 -6.76746 -5.90579 -3.35619 1.63897 2.81306 3.19286 3.25970 3.31918 3.34622 3.57491 3.67063 4.35699 5.07683 5.12811 5.24372 5.24520 5.38510 5.47828 5.53508 5.58252 5.70240 5.90954 6.04848 6.11691 6.16140 6.17828 6.29715 6.36767 6.48552 6.60669 6.62416 6.71874 6.75398 6.88187 6.89242 6.96266 7.06079 7.30644 7.42052 7.58230 7.67701 7.95884 8.32350 8.54104 9.08532 9.71979 10.29665 11.17145 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.006479 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.433528 B = 4320.693508 C = 5256.289616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.042 0.958 4 C 0.135 3.865 5 H 0.078 0.922 6 N -0.700 5.700 7 C 0.582 3.418 8 O -0.545 6.545 9 C -0.047 4.047 10 C -0.117 4.117 11 C -0.216 4.216 12 C 0.017 3.983 13 N -0.537 5.537 14 H 0.420 0.580 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.260 4.260 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.897 5.897 23 Si 0.899 3.101 24 H -0.286 1.286 25 H -0.282 1.282 26 H -0.290 1.290 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.402 0.598 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -7.123 8.730 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.029 3.971 5 H 0.096 0.904 6 N -0.351 5.351 7 C 0.369 3.631 8 O -0.423 6.423 9 C -0.160 4.160 10 C -0.144 4.144 11 C -0.240 4.240 12 C -0.120 4.120 13 N -0.132 5.132 14 H 0.258 0.742 15 C -0.160 4.160 16 C -0.179 4.179 17 C 0.045 3.955 18 N -0.310 5.310 19 C -0.390 4.390 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.213 1.213 25 H -0.207 1.207 26 H -0.216 1.216 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.238 0.762 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.203 -6.596 9.096 11.683 hybrid contribution -0.554 -0.618 -1.658 1.854 sum -3.757 -7.214 7.438 11.022 Atomic orbital electron populations 1.21774 0.95644 1.01215 1.00618 1.20830 0.93310 0.93980 0.86802 0.94072 1.21633 0.92977 0.82611 0.99925 0.90400 1.45888 1.61894 1.18713 1.08556 1.17110 0.78515 0.83419 0.84105 1.90787 1.50819 1.66408 1.34263 1.20643 1.11756 0.95418 0.88216 1.21263 1.01973 0.93762 0.97376 1.20849 1.09065 0.99816 0.94282 1.22008 1.04561 0.89498 0.95905 1.42158 1.47062 1.14417 1.09594 0.74230 1.21776 0.95412 1.00544 0.98282 1.22129 0.98990 0.99443 0.97301 1.20807 0.83100 0.97221 0.94340 1.44189 1.03067 1.64942 1.18798 1.19103 0.94865 1.38660 0.86344 0.91319 1.25093 0.97779 0.99416 0.96932 1.70020 1.23959 1.43207 1.16850 0.86387 0.79406 0.80011 0.81285 1.21307 1.20728 1.21596 0.93111 0.94066 0.91689 0.76231 0.83790 0.84220 0.81461 0.92989 0.91790 0.93092 0.93382 0.89592 0.96318 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.75 37.16 0.29 -2.10 16 2 C 0.16 3.05 3.22 -67.37 -0.22 2.83 16 3 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.13 2.38 2.33 -67.58 -0.16 2.23 16 5 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.70 -11.73 3.47 -54.78 -0.19 -11.92 16 7 C 0.58 10.07 7.75 -12.86 -0.10 9.97 16 8 O -0.54 -10.93 16.55 5.20 0.09 -10.84 16 9 C -0.05 -0.70 7.06 -81.99 -0.58 -1.28 16 10 C -0.12 -1.65 10.65 -39.12 -0.42 -2.06 16 11 C -0.22 -2.49 10.81 -39.98 -0.43 -2.92 16 12 C 0.02 0.18 11.89 -16.91 -0.20 -0.03 16 13 N -0.54 -6.59 5.99 -9.39 -0.06 -6.64 16 14 H 0.42 4.63 8.19 -40.82 -0.33 4.29 16 15 C -0.12 -2.15 5.57 -26.69 -0.15 -2.30 16 16 C -0.14 -2.61 5.93 -26.61 -0.16 -2.77 16 17 C 0.17 3.80 5.29 -3.71 -0.02 3.78 16 18 N -0.59 -13.03 2.64 -164.52 -0.43 -13.47 16 19 C -0.26 -6.29 8.59 -15.06 -0.13 -6.42 16 20 H 0.07 1.60 6.22 -52.48 -0.33 1.27 16 21 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 22 N -0.90 -24.46 11.21 55.49 0.62 -23.84 16 23 Si 0.90 20.11 29.58 -169.99 -5.03 15.08 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.05 0.88 6.42 -51.93 -0.33 0.54 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 30 H 0.40 6.67 6.92 -40.82 -0.28 6.38 16 31 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.97 7.53 -51.93 -0.39 0.58 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.15 6.10 -51.93 -0.32 1.83 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -28.93 320.44 -8.24 -37.17 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.71 Total: 10.59 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.36 Total: -0.96 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.06 Total: -55.86 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.93 -8.24 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993024191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.021 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds