Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.70566 * 2 1 4 4 C 1.53626 * 109.66224 * 120.59878 * 2 1 3 5 5 H 1.08996 * 109.45884 * 294.42884 * 4 2 1 6 6 N 1.46502 * 109.63760 * 54.55350 * 4 2 1 7 7 C 1.34777 * 120.00134 * 204.83490 * 6 4 2 8 8 O 1.21692 * 119.99805 * 0.02562 * 7 6 4 9 9 C 1.46669 * 119.99921 * 179.97438 * 7 6 4 10 10 C 1.37871 * 126.23265 * 180.02562 * 9 7 6 11 11 C 1.39837 * 107.08831 * 179.97438 * 10 9 7 12 12 C 1.35452 * 107.86315 * 0.02562 * 11 10 9 13 13 N 1.35539 * 108.87071 * 359.76686 * 12 11 10 14 14 H 0.97003 * 125.67622 * 180.26557 * 13 12 11 15 15 C 1.53042 * 109.24163 * 174.54449 * 4 2 1 16 16 C 1.53040 * 109.53577 * 298.50901 * 15 4 2 17 17 C 1.53188 * 109.31368 * 61.36819 * 16 15 4 18 18 N 1.46927 * 108.77455 * 305.36227 * 17 16 15 19 19 C 1.36936 * 120.63108 * 233.58941 * 18 17 16 20 20 H 1.08004 * 120.00259 * 151.11722 * 19 18 17 21 21 C 1.38810 * 119.99982 * 331.11292 * 19 18 17 22 22 N 1.31616 * 120.00200 * 343.75142 * 21 19 18 23 23 Si 1.86807 * 119.99986 * 163.74361 * 21 19 18 24 24 H 1.48494 * 109.47234 * 84.98632 * 23 21 19 25 25 H 1.48500 * 109.46836 * 324.98462 * 23 21 19 26 26 H 1.48504 * 109.47145 * 204.98739 * 23 21 19 27 27 H 1.08996 * 109.47302 * 180.35445 * 1 2 3 28 28 H 1.09001 * 109.46655 * 300.35682 * 1 2 3 29 29 H 1.08995 * 109.46879 * 60.34878 * 1 2 3 30 30 H 0.97002 * 119.99865 * 24.83213 * 6 4 2 31 31 H 1.07996 * 126.46146 * 359.92651 * 10 9 7 32 32 H 1.08003 * 126.07254 * 180.02562 * 11 10 9 33 33 H 1.08002 * 125.56582 * 180.02562 * 12 11 10 34 34 H 1.08996 * 109.46207 * 178.48805 * 15 4 2 35 35 H 1.09000 * 109.45894 * 58.52597 * 15 4 2 36 36 H 1.08994 * 109.49812 * 301.41119 * 16 15 4 37 37 H 1.09002 * 109.52238 * 181.32668 * 16 15 4 38 38 H 1.09001 * 109.59108 * 185.57403 * 17 16 15 39 39 H 1.09003 * 109.59182 * 65.14719 * 17 16 15 40 40 H 0.97002 * 120.00677 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0470 -0.7364 1.2452 5 1 1.7689 -0.1778 2.1389 6 7 1.4591 -2.0770 1.3039 7 6 1.3427 -2.7106 2.4877 8 8 1.7255 -2.1689 3.5080 9 6 0.7536 -4.0525 2.5465 10 6 0.5728 -4.8141 3.6814 11 6 -0.0188 -6.0159 3.2799 12 6 -0.1848 -5.9688 1.9364 13 7 0.2761 -4.7789 1.4792 14 1 0.2715 -4.4883 0.5538 15 6 3.5712 -0.8500 1.1675 16 6 3.9614 -1.6630 -0.0690 17 6 3.4656 -0.9421 -1.3264 18 7 2.0225 -0.6995 -1.1945 19 6 1.1537 -1.1126 -2.1690 20 1 0.1364 -1.3690 -1.9122 21 6 1.5803 -1.2017 -3.4869 22 7 2.6898 -0.6010 -3.8615 23 14 0.5797 -2.1744 -4.7288 24 1 -0.4941 -1.3119 -5.2838 25 1 -0.0279 -3.3532 -4.0605 26 1 1.4658 -2.6316 -5.8293 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5084 -0.8931 30 1 1.1536 -2.5086 0.4907 31 1 0.8386 -4.5356 4.6904 32 1 -0.2944 -6.8362 3.9261 33 1 -0.6179 -6.7499 1.3291 34 1 3.9443 -1.3483 2.0623 35 1 4.0066 0.1469 1.0989 36 1 3.5060 -2.6517 -0.0130 37 1 5.0459 -1.7638 -0.1113 38 1 3.6531 -1.5637 -2.2020 39 1 3.9877 0.0088 -1.4324 40 1 2.9882 -0.6635 -4.7824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993024191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = 8.611508 kcal Electronic energy + Delta-G solvation = -22547.080071 eV Core-core repulsion = 19362.127904 eV Total energy + Delta-G solvation = -3184.952168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17584 -40.71300 -38.94523 -35.65238 -34.09133 -33.46577 -31.96675 -31.33901 -29.85780 -27.86838 -26.85569 -24.47244 -23.26889 -22.37925 -21.54420 -20.97668 -20.29068 -19.90460 -18.26962 -17.20592 -16.74771 -16.45866 -16.35331 -15.72352 -15.34792 -15.15659 -14.87991 -14.70268 -14.45052 -14.36545 -14.19988 -13.66518 -13.45883 -13.14930 -12.97004 -12.89505 -12.74422 -12.43293 -12.37618 -12.20745 -11.95806 -11.70765 -11.40890 -11.13713 -11.03565 -10.50788 -10.04386 -9.91782 -9.13396 -8.63214 -7.82801 -5.29192 0.53710 1.49123 1.51097 1.58087 1.89614 2.19108 2.33057 2.44248 2.52979 3.33404 3.56871 3.87742 4.04429 4.06151 4.18218 4.34680 4.36657 4.46933 4.53777 4.55762 4.63381 4.75801 4.92264 4.96671 5.01608 5.09669 5.15824 5.19687 5.29865 5.32685 5.41525 5.52245 5.58442 5.72340 5.77150 5.82150 5.99739 6.42253 6.51471 6.66946 7.17342 7.21848 7.87878 8.42082 9.23764 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.006479 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.433528 B = 4320.693508 C = 5256.289616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.033 0.967 4 C 0.143 3.857 5 H 0.080 0.920 6 N -0.695 5.695 7 C 0.583 3.417 8 O -0.580 6.580 9 C -0.082 4.082 10 C -0.125 4.125 11 C -0.224 4.224 12 C 0.038 3.962 13 N -0.533 5.533 14 H 0.425 0.575 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.250 4.250 20 H 0.082 0.918 21 C -0.048 4.048 22 N -0.935 5.935 23 Si 0.959 3.041 24 H -0.290 1.290 25 H -0.263 1.263 26 H -0.303 1.303 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.404 0.596 31 H 0.139 0.861 32 H 0.165 0.835 33 H 0.209 0.791 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.057 0.943 39 H -0.005 1.005 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -9.113 9.465 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.051 0.949 4 C 0.037 3.963 5 H 0.098 0.902 6 N -0.345 5.345 7 C 0.372 3.628 8 O -0.461 6.461 9 C -0.195 4.195 10 C -0.152 4.152 11 C -0.248 4.248 12 C -0.099 4.099 13 N -0.130 5.130 14 H 0.264 0.736 15 C -0.155 4.155 16 C -0.164 4.164 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.380 4.380 20 H 0.099 0.901 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.788 3.212 24 H -0.218 1.218 25 H -0.187 1.187 26 H -0.230 1.230 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.240 0.760 31 H 0.157 0.843 32 H 0.183 0.817 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.013 0.987 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.787 -8.593 9.847 13.919 hybrid contribution -0.102 -0.025 -1.820 1.823 sum -4.890 -8.618 8.028 12.752 Atomic orbital electron populations 1.21691 0.94191 1.01613 1.00948 1.20941 0.94514 0.93460 0.86166 0.94912 1.21430 0.92908 0.83141 0.98847 0.90206 1.45781 1.61818 1.18232 1.08655 1.17388 0.77858 0.84116 0.83421 1.90758 1.52528 1.67542 1.35236 1.20343 1.14474 0.95107 0.89607 1.21493 1.01834 0.94808 0.97106 1.21196 1.08816 0.99568 0.95200 1.22740 1.01974 0.89076 0.96105 1.42189 1.46733 1.14682 1.09347 0.73613 1.21728 0.95520 1.00653 0.97581 1.21939 0.99711 0.98893 0.95843 1.20582 0.83347 0.95809 0.94908 1.44356 1.02855 1.65417 1.19250 1.19470 0.95343 1.36725 0.86487 0.90095 1.25784 0.98906 1.00907 0.98779 1.70183 1.25945 1.45394 1.16579 0.85433 0.77648 0.79230 0.78913 1.21764 1.18712 1.22972 0.92642 0.91864 0.93187 0.76024 0.84293 0.81700 0.77413 0.92781 0.91270 0.93153 0.92033 0.92507 0.98695 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.75 71.98 0.56 -3.74 16 2 C 0.16 5.90 3.22 45.12 0.15 6.04 16 3 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.14 4.93 2.33 45.22 0.11 5.04 16 5 H 0.08 2.77 7.58 -2.39 -0.02 2.75 16 6 N -0.70 -22.48 3.47 -445.44 -1.55 -24.03 16 7 C 0.58 19.69 7.75 86.44 0.67 20.36 16 8 O -0.58 -23.10 16.55 -4.32 -0.07 -23.17 16 9 C -0.08 -2.35 7.06 40.35 0.28 -2.07 16 10 C -0.13 -3.31 10.65 22.57 0.24 -3.07 16 11 C -0.22 -4.44 10.81 22.01 0.24 -4.20 16 12 C 0.04 0.65 11.89 83.48 0.99 1.65 16 13 N -0.53 -11.65 5.99 -183.63 -1.10 -12.76 16 14 H 0.43 8.24 8.19 -92.71 -0.76 7.48 16 15 C -0.12 -4.01 5.57 30.62 0.17 -3.84 16 16 C -0.12 -4.60 5.93 30.67 0.18 -4.42 16 17 C 0.18 8.10 5.29 86.36 0.46 8.56 16 18 N -0.59 -26.38 2.64 -674.41 -1.78 -28.16 16 19 C -0.25 -11.96 8.59 84.03 0.72 -11.23 16 20 H 0.08 3.63 6.22 -2.91 -0.02 3.61 16 21 C -0.05 -2.46 4.93 84.86 0.42 -2.05 16 22 N -0.93 -52.24 11.21 21.65 0.24 -52.00 16 23 Si 0.96 41.23 29.58 68.60 2.03 43.26 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 27 H 0.05 1.81 6.42 -2.39 -0.02 1.79 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.83 7.62 -2.39 -0.02 1.82 16 30 H 0.40 12.80 6.92 -92.71 -0.64 12.16 16 31 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.92 6.10 -2.39 -0.01 2.90 16 39 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -62.78 320.44 2.62 -60.16 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.34 Total: 29.67 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.18 Total: 7.02 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -4.18 Total: -116.94 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -62.78 2.62 -60.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993024191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.769 kcal (2) G-P(sol) polarization free energy of solvation -62.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds