Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70008 * 2 1 4 4 C 1.53194 * 109.58380 * 120.35236 * 2 1 3 5 5 H 1.08995 * 109.49821 * 54.44316 * 4 2 1 6 6 N 1.46500 * 109.49905 * 294.37442 * 4 2 1 7 7 C 1.34778 * 119.99716 * 154.79366 * 6 4 2 8 8 O 1.21627 * 119.99861 * 0.27144 * 7 6 4 9 9 C 1.47256 * 119.99890 * 180.27925 * 7 6 4 10 10 C 1.46691 * 126.94363 * 359.67906 * 9 7 6 11 11 C 1.34487 * 106.33580 * 179.83328 * 10 9 7 12 12 N 1.36451 * 108.85162 * 0.43603 * 11 10 9 13 13 H 0.96998 * 124.85149 * 179.68539 * 12 11 10 14 14 C 1.34663 * 110.30024 * 359.71110 * 12 11 10 15 15 C 1.53038 * 109.33492 * 174.40964 * 4 2 1 16 16 C 1.53048 * 109.54161 * 298.68321 * 15 4 2 17 17 C 1.53200 * 109.33571 * 61.31646 * 16 15 4 18 18 N 1.46921 * 109.58701 * 239.64699 * 2 1 3 19 19 C 1.36935 * 120.63323 * 6.57991 * 18 2 1 20 20 H 1.08000 * 119.99981 * 330.16952 * 19 18 2 21 21 C 1.38811 * 120.00088 * 150.16860 * 19 18 2 22 22 N 1.31612 * 119.99838 * 344.50071 * 21 19 18 23 23 Si 1.86799 * 119.99884 * 164.50048 * 21 19 18 24 24 H 1.48497 * 109.46986 * 90.00124 * 23 21 19 25 25 H 1.48497 * 109.47194 * 209.99966 * 23 21 19 26 26 H 1.48498 * 109.47366 * 329.99929 * 23 21 19 27 27 H 1.09000 * 109.47349 * 299.64338 * 1 2 3 28 28 H 1.09001 * 109.47261 * 59.64544 * 1 2 3 29 29 H 1.08999 * 109.46949 * 179.64584 * 1 2 3 30 30 H 0.97002 * 120.00061 * 335.06937 * 6 4 2 31 31 H 1.08000 * 126.83374 * 0.02562 * 10 9 7 32 32 H 1.07996 * 125.57817 * 180.14744 * 11 10 9 33 33 H 1.07993 * 125.79711 * 180.02562 * 14 12 11 34 34 H 1.08998 * 109.46264 * 58.67260 * 15 4 2 35 35 H 1.09006 * 109.45929 * 178.63461 * 15 4 2 36 36 H 1.09000 * 109.46950 * 301.37006 * 16 15 4 37 37 H 1.08999 * 109.52533 * 181.29977 * 16 15 4 38 38 H 1.09000 * 109.58510 * 185.59475 * 17 16 15 39 39 H 1.08999 * 109.69992 * 65.24221 * 17 16 15 40 40 H 0.97005 * 119.99802 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 1 1.6025 -1.7250 1.2917 6 7 1.6705 0.0268 2.4435 7 6 1.5430 -0.6055 3.6269 8 8 1.7426 -1.8030 3.7011 9 6 1.1620 0.1534 4.8300 10 6 0.8932 1.5929 4.9159 11 6 0.5803 1.8433 6.1997 12 7 0.6459 0.6771 6.9050 13 1 0.4680 0.5930 7.8548 14 6 0.9933 -0.3404 6.0942 15 6 3.5674 -0.8485 1.1707 16 6 3.9570 -1.6656 -0.0634 17 6 3.4651 -0.9468 -1.3237 18 7 2.0226 -0.6995 -1.1945 19 6 1.1537 -1.1134 -2.1686 20 1 0.1399 -1.3809 -1.9097 21 6 1.5760 -1.1893 -3.4887 22 7 2.6864 -0.5882 -3.8599 23 14 0.5683 -2.1446 -4.7382 24 1 -0.4259 -1.2393 -5.3685 25 1 1.4683 -2.6955 -5.7829 26 1 -0.1388 -3.2584 -4.0565 27 1 -0.3634 0.5083 0.8931 28 1 -0.3634 0.5193 -0.8868 29 1 -0.3633 -1.0276 -0.0064 30 1 1.5113 0.9818 2.3843 31 1 0.9348 2.3087 4.1082 32 1 0.3241 2.8102 6.6069 33 1 1.1171 -1.3712 6.3916 34 1 4.0065 0.1466 1.1001 35 1 3.9372 -1.3457 2.0675 36 1 3.4984 -2.6527 -0.0052 37 1 5.0412 -1.7699 -0.1039 38 1 3.6519 -1.5716 -2.1971 39 1 3.9901 0.0020 -1.4342 40 1 2.9813 -0.6410 -4.7826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993362766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = 3.402003 kcal Electronic energy + Delta-G solvation = -21851.295970 eV Core-core repulsion = 18666.117901 eV Total energy + Delta-G solvation = -3185.178069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94985 -40.59470 -38.95609 -35.79783 -34.24059 -33.40355 -32.07047 -30.65533 -29.91750 -27.84920 -26.85545 -24.67544 -22.88015 -22.30265 -21.50674 -21.09482 -20.31574 -19.56092 -18.23049 -17.23880 -17.00378 -16.59198 -15.97323 -15.60369 -15.48801 -15.06341 -14.79673 -14.73314 -14.52272 -14.34411 -14.19910 -13.82686 -13.33128 -13.22410 -12.96127 -12.78124 -12.70288 -12.48927 -12.35958 -12.00768 -11.80183 -11.74817 -11.59038 -11.16122 -10.83871 -10.51031 -10.01313 -9.64395 -9.22618 -8.62257 -7.83932 -5.30101 0.85821 1.47506 1.49921 1.58968 1.62764 2.20722 2.52659 2.67272 2.69032 3.31787 3.66145 3.90760 4.05193 4.12184 4.22970 4.27358 4.38649 4.46097 4.55022 4.59169 4.64452 4.79383 4.91097 4.95141 5.04159 5.06657 5.15394 5.18515 5.29343 5.32311 5.46407 5.53631 5.65468 5.72462 5.78435 5.82911 6.01982 6.43975 6.69928 6.82182 7.18346 7.45230 7.88408 8.40923 9.23264 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033001 B = 0.004082 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.243508 B = 6857.155808 C = 7156.276690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.165 3.835 3 H 0.033 0.967 4 C 0.148 3.852 5 H 0.054 0.946 6 N -0.704 5.704 7 C 0.583 3.417 8 O -0.603 6.603 9 C -0.267 4.267 10 C -0.190 4.190 11 C -0.002 4.002 12 N -0.537 5.537 13 H 0.436 0.564 14 C 0.072 3.928 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.177 3.823 18 N -0.600 5.600 19 C -0.256 4.256 20 H 0.071 0.929 21 C -0.047 4.047 22 N -0.933 5.933 23 Si 0.961 3.039 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.409 0.591 31 H 0.156 0.844 32 H 0.207 0.793 33 H 0.181 0.819 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 6.747 21.864 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.051 0.949 4 C 0.041 3.959 5 H 0.072 0.928 6 N -0.354 5.354 7 C 0.374 3.626 8 O -0.487 6.487 9 C -0.277 4.277 10 C -0.214 4.214 11 C -0.130 4.130 12 N -0.133 5.133 13 H 0.276 0.724 14 C -0.067 4.067 15 C -0.147 4.147 16 C -0.169 4.169 17 C 0.052 3.948 18 N -0.324 5.324 19 C -0.386 4.386 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.245 0.755 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.198 0.802 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.023 0.977 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.393 5.960 21.877 22.927 hybrid contribution -0.272 -0.299 -0.923 1.008 sum -3.665 5.661 20.954 22.012 Atomic orbital electron populations 1.21711 0.94505 1.00964 1.01180 1.20709 0.94261 0.93436 0.85748 0.94949 1.21256 0.94765 0.95424 0.84408 0.92779 1.45686 1.70034 1.12457 1.07191 1.17929 0.75356 0.86020 0.83324 1.90722 1.54411 1.16877 1.86645 1.20408 1.18461 0.95660 0.93204 1.22324 1.07661 0.93180 0.98196 1.22346 1.07260 0.91657 0.91781 1.41661 1.53052 1.06657 1.11959 0.72390 1.21940 1.00565 0.94548 0.89633 1.21679 0.95498 1.00233 0.97310 1.22026 1.00314 0.98723 0.95828 1.20619 0.83202 0.96111 0.94914 1.44265 1.03161 1.65887 1.19115 1.19438 0.95517 1.36967 0.86680 0.91188 1.25765 0.99093 1.00730 0.98648 1.70167 1.25694 1.45394 1.16635 0.85369 0.77954 0.78817 0.78878 1.20944 1.21980 1.19948 0.90883 0.93114 0.94210 0.75470 0.82672 0.77618 0.80155 0.91671 0.92915 0.93790 0.90863 0.92749 0.97711 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 7.84 71.98 0.56 -4.24 16 2 C 0.17 6.87 3.03 44.98 0.14 7.01 16 3 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.15 5.69 1.99 45.07 0.09 5.78 16 5 H 0.05 2.44 7.57 -2.39 -0.02 2.42 16 6 N -0.70 -22.07 4.57 -445.59 -2.04 -24.10 16 7 C 0.58 19.42 7.78 86.61 0.67 20.09 16 8 O -0.60 -25.01 16.57 -4.12 -0.07 -25.08 16 9 C -0.27 -6.68 6.29 -19.04 -0.12 -6.80 16 10 C -0.19 -3.43 10.56 23.62 0.25 -3.18 16 11 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 12 N -0.54 -5.92 5.90 -194.56 -1.15 -7.07 16 13 H 0.44 1.39 8.96 -92.71 -0.83 0.56 16 14 C 0.07 1.37 11.69 83.91 0.98 2.35 16 15 C -0.11 -4.08 5.46 30.62 0.17 -3.91 16 16 C -0.13 -5.33 6.08 30.68 0.19 -5.14 16 17 C 0.18 8.78 5.28 86.37 0.46 9.24 16 18 N -0.60 -30.48 2.99 -675.22 -2.02 -32.50 16 19 C -0.26 -14.09 8.58 84.03 0.72 -13.37 16 20 H 0.07 3.77 6.23 -2.91 -0.02 3.75 16 21 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 22 N -0.93 -55.28 11.23 21.65 0.24 -55.04 16 23 Si 0.96 45.48 29.58 68.60 2.03 47.51 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 H 0.07 2.26 7.78 -2.39 -0.02 2.24 16 28 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 29 H 0.04 1.61 7.40 -2.39 -0.02 1.60 16 30 H 0.41 10.48 7.73 -92.71 -0.72 9.76 16 31 H 0.16 2.33 7.70 -2.91 -0.02 2.31 16 32 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.05 3.03 6.15 -2.39 -0.01 3.02 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -73.88 324.04 2.03 -71.85 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.49 Total: 17.87 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.51 Total: 6.57 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.96 Total: -118.71 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -73.88 2.03 -71.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.252 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds