Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58546 * 2 1 4 4 C 1.53193 * 109.58786 * 239.57846 * 2 1 3 5 5 H 1.08991 * 109.49890 * 65.59624 * 4 2 1 6 6 N 1.46494 * 109.49750 * 305.52411 * 4 2 1 7 7 C 1.34780 * 120.00249 * 155.00053 * 6 4 2 8 8 O 1.21623 * 119.99460 * 0.02562 * 7 6 4 9 9 C 1.47263 * 119.99914 * 180.02562 * 7 6 4 10 10 C 1.46681 * 126.94362 * 359.68029 * 9 7 6 11 11 C 1.34494 * 106.33167 * 179.89055 * 10 9 7 12 12 N 1.36449 * 108.85580 * 0.37903 * 11 10 9 13 13 H 0.96996 * 124.85101 * 179.76600 * 12 11 10 14 14 C 1.34660 * 110.29854 * 359.74761 * 12 11 10 15 15 C 1.53043 * 109.31394 * 185.57752 * 4 2 1 16 16 C 1.53040 * 109.54040 * 61.36204 * 15 4 2 17 17 C 1.53627 * 109.23985 * 298.51334 * 16 15 4 18 18 N 1.46924 * 109.58848 * 120.28532 * 2 1 3 19 19 C 1.36932 * 120.63036 * 353.37622 * 18 2 1 20 20 H 1.08005 * 120.00090 * 29.70027 * 19 18 2 21 21 C 1.38814 * 120.00097 * 209.70444 * 19 18 2 22 22 N 1.31619 * 120.00142 * 24.34721 * 21 19 18 23 23 Si 1.86805 * 119.99977 * 204.35459 * 21 19 18 24 24 H 1.48497 * 109.47205 * 89.99895 * 23 21 19 25 25 H 1.48497 * 109.46925 * 329.99339 * 23 21 19 26 26 H 1.48500 * 109.46915 * 209.99744 * 23 21 19 27 27 H 1.09000 * 109.47163 * 299.71353 * 1 2 3 28 28 H 1.09003 * 109.47119 * 59.71844 * 1 2 3 29 29 H 1.09001 * 109.46757 * 179.71502 * 1 2 3 30 30 H 0.97009 * 120.00209 * 335.00255 * 6 4 2 31 31 H 1.07999 * 126.83935 * 0.02562 * 10 9 7 32 32 H 1.07995 * 125.57178 * 180.08924 * 11 10 9 33 33 H 1.07999 * 125.80216 * 179.97438 * 14 12 11 34 34 H 1.09000 * 109.45959 * 181.38496 * 15 4 2 35 35 H 1.09006 * 109.45582 * 301.34539 * 15 4 2 36 36 H 1.08996 * 109.49538 * 58.58324 * 16 15 4 37 37 H 1.08995 * 109.49888 * 178.68574 * 16 15 4 38 38 H 1.09002 * 109.74222 * 295.11344 * 17 16 15 39 39 H 1.09009 * 109.66465 * 174.54639 * 17 16 15 40 40 H 0.96999 * 119.99881 * 4.05372 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2446 5 1 1.7656 -0.1696 -2.1366 6 7 1.4515 -2.0694 -1.3047 7 6 1.3285 -2.6994 -2.4898 8 8 1.7095 -2.1566 -3.5094 9 6 0.7329 -4.0448 -2.5502 10 6 0.2320 -4.8386 -1.4230 11 6 -0.2212 -5.9924 -1.9448 12 7 -0.0300 -5.9706 -3.2957 13 1 -0.2709 -6.6891 -3.9012 14 6 0.5405 -4.8091 -3.6681 15 6 3.5675 -0.8493 -1.1692 16 6 3.9570 -1.6656 0.0654 17 6 3.4657 -0.9403 1.3275 18 7 2.0226 -0.6981 1.1953 19 6 1.1538 -1.1101 2.1703 20 1 0.1391 -1.3752 1.9125 21 6 1.5773 -1.1868 3.4900 22 7 2.5879 -0.4505 3.9008 23 14 0.7129 -2.3355 4.6830 24 1 1.3718 -3.6660 4.6544 25 1 -0.7111 -2.4796 4.2874 26 1 0.7910 -1.7738 6.0554 27 1 -0.3633 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8875 29 1 -0.3633 -1.0277 -0.0051 30 1 1.1480 -2.5025 -0.4914 31 1 0.2260 -4.5526 -0.3816 32 1 -0.6599 -6.8053 -1.3854 33 1 0.8021 -4.5289 -4.6778 34 1 3.9378 -1.3472 -2.0653 35 1 4.0061 0.1462 -1.0995 36 1 3.4984 -2.6527 0.0084 37 1 5.0413 -1.7693 0.1057 38 1 3.9878 0.0108 1.4323 39 1 3.6533 -1.5610 2.2037 40 1 2.9989 0.1886 3.2979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993362769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = 24.272857 kcal Electronic energy + Delta-G solvation = -22513.800771 eV Core-core repulsion = 19329.527731 eV Total energy + Delta-G solvation = -3184.273040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02090 -39.29361 -37.38042 -34.01448 -32.44104 -31.80155 -30.77574 -29.22836 -28.84588 -26.24634 -24.87923 -23.16167 -21.49122 -20.88972 -20.61222 -19.32070 -18.70852 -18.57084 -16.94846 -15.86942 -15.27642 -14.81104 -14.49560 -14.18701 -13.91484 -13.78715 -13.54531 -13.42399 -13.03405 -13.00654 -12.92403 -12.53622 -11.98057 -11.70793 -11.39714 -11.17390 -10.92252 -10.74678 -10.57313 -10.16323 -10.07796 -9.97738 -9.72803 -9.44419 -9.09514 -8.82332 -8.47248 -8.34869 -8.20554 -6.83629 -6.04178 -3.22886 1.94678 2.49989 3.16530 3.49778 3.51192 3.67346 3.93152 3.96504 4.58169 4.96581 5.12263 5.21063 5.32473 5.42619 5.53398 5.58530 5.65247 5.73152 5.90403 5.93283 6.11261 6.15813 6.23344 6.33132 6.43573 6.48120 6.59440 6.64928 6.73937 6.76304 6.89317 6.92847 7.02432 7.12566 7.17831 7.29343 7.41192 8.04839 8.24674 8.60318 8.85169 9.13332 9.87139 10.32596 11.24063 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.006465 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.706874 B = 4329.997778 C = 5292.623965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.160 3.840 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.075 0.925 6 N -0.695 5.695 7 C 0.584 3.416 8 O -0.571 6.571 9 C -0.226 4.226 10 C -0.164 4.164 11 C -0.024 4.024 12 N -0.557 5.557 13 H 0.415 0.585 14 C 0.065 3.935 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.152 3.848 18 N -0.593 5.593 19 C -0.350 4.350 20 H 0.062 0.938 21 C -0.023 4.023 22 N -0.917 5.917 23 Si 1.066 2.934 24 H -0.294 1.294 25 H -0.292 1.292 26 H -0.291 1.291 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.409 0.591 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -9.327 -11.841 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.093 0.907 6 N -0.345 5.345 7 C 0.372 3.628 8 O -0.453 6.453 9 C -0.237 4.237 10 C -0.188 4.188 11 C -0.151 4.151 12 N -0.152 5.152 13 H 0.251 0.749 14 C -0.071 4.071 15 C -0.160 4.160 16 C -0.174 4.174 17 C 0.026 3.974 18 N -0.318 5.318 19 C -0.479 4.479 20 H 0.080 0.920 21 C -0.225 4.225 22 N -0.557 5.557 23 Si 0.897 3.103 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.218 1.218 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.003 -9.606 -10.984 15.131 hybrid contribution -0.201 0.056 -1.398 1.414 sum -4.204 -9.550 -12.382 16.192 Atomic orbital electron populations 1.21747 0.95415 1.01598 1.00217 1.20718 0.93625 0.93552 0.86765 0.94678 1.21452 0.92665 0.83452 0.99514 0.90666 1.45777 1.61489 1.18151 1.09102 1.17407 0.77767 0.84110 0.83518 1.90705 1.52167 1.67775 1.34639 1.20527 1.12583 0.96826 0.93725 1.22223 1.03711 0.94205 0.98666 1.21763 1.08958 1.01352 0.83023 1.41607 1.49277 1.16085 1.08267 0.74935 1.21773 0.99767 0.86113 0.99451 1.21771 0.95813 1.00191 0.98176 1.22086 0.98872 0.99753 0.96654 1.21051 0.84223 0.96638 0.95504 1.44238 1.02515 1.65475 1.19541 1.19965 0.96242 1.43517 0.88140 0.92033 1.25820 1.00268 1.00641 0.95792 1.70741 1.26125 1.21144 1.37653 0.83484 0.74877 0.75985 0.75992 1.22128 1.21889 1.21771 0.91925 0.94314 0.92609 0.75433 0.83392 0.81525 0.80878 0.92865 0.92115 0.92334 0.93424 0.96601 0.90466 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.74 37.16 0.29 -2.24 16 2 C 0.16 3.27 3.20 -67.60 -0.22 3.05 16 3 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.14 2.55 2.33 -67.81 -0.16 2.39 16 5 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 6 N -0.70 -12.65 3.45 -54.82 -0.19 -12.84 16 7 C 0.58 10.64 7.78 -12.59 -0.10 10.54 16 8 O -0.57 -11.80 16.57 5.26 0.09 -11.71 16 9 C -0.23 -3.46 6.29 -103.35 -0.65 -4.11 16 10 C -0.16 -2.22 10.56 -37.50 -0.40 -2.61 16 11 C -0.02 -0.24 11.89 -16.82 -0.20 -0.44 16 12 N -0.56 -5.05 5.90 -12.84 -0.08 -5.12 16 13 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 14 C 0.07 0.79 11.69 -16.84 -0.20 0.59 16 15 C -0.12 -2.23 5.58 -26.69 -0.15 -2.38 16 16 C -0.13 -2.61 5.95 -26.38 -0.16 -2.76 16 17 C 0.15 3.44 4.71 -3.48 -0.02 3.42 16 18 N -0.59 -13.76 2.48 -164.50 -0.41 -14.17 16 19 C -0.35 -8.94 8.48 -15.06 -0.13 -9.07 16 20 H 0.06 1.56 6.30 -52.48 -0.33 1.23 16 21 C -0.02 -0.61 4.69 -17.43 -0.08 -0.69 16 22 N -0.92 -26.60 12.51 55.49 0.69 -25.91 16 23 Si 1.07 24.36 29.98 -169.99 -5.10 19.26 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.07 6.39 -51.93 -0.33 0.74 16 30 H 0.41 7.65 6.90 -40.82 -0.28 7.36 16 31 H 0.15 2.01 7.70 -52.49 -0.40 1.61 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 39 H 0.08 1.97 6.41 -51.92 -0.33 1.63 16 40 H 0.27 7.92 6.64 -40.82 -0.27 7.65 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -31.49 319.77 -7.99 -39.48 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.66 Total: 10.49 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.16 Total: -4.30 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.02 Total: -58.04 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.10 Total: 19.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.49 -7.99 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.755 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds