Wall clock time and date at job start Mon Mar 30 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.52455 * 2 1 4 4 C 1.53191 * 109.49757 * 239.91256 * 2 1 3 5 5 N 1.46927 * 108.77184 * 185.41475 * 4 2 1 6 6 C 1.34775 * 120.62979 * 233.58784 * 5 4 2 7 7 O 1.21693 * 120.00338 * 359.88073 * 6 5 4 8 8 C 1.46680 * 120.00407 * 179.88306 * 6 5 4 9 9 C 1.37869 * 126.23692 * 208.87610 * 8 6 5 10 10 C 1.39842 * 107.08674 * 179.84320 * 9 8 6 11 11 C 1.35447 * 107.86240 * 0.41614 * 10 9 8 12 12 N 1.35539 * 108.87547 * 359.73764 * 11 10 9 13 13 H 0.96994 * 125.67823 * 180.02562 * 12 11 10 14 14 C 1.46926 * 118.74303 * 53.61401 * 5 4 2 15 15 C 1.53192 * 108.77149 * 306.39083 * 14 5 4 16 16 C 1.53039 * 109.31490 * 54.63361 * 15 14 5 17 17 H 1.08992 * 109.45965 * 58.65598 * 16 15 14 18 18 N 1.46499 * 109.45767 * 178.61756 * 16 15 14 19 19 C 1.36943 * 119.99567 * 274.99501 * 18 16 15 20 20 H 1.07992 * 120.00163 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99783 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47255 * 120.00013 * 23 21 19 26 26 H 1.48499 * 109.46978 * 239.99916 * 23 21 19 27 27 H 1.09000 * 109.47277 * 299.92262 * 1 2 3 28 28 H 1.09005 * 109.47092 * 59.92418 * 1 2 3 29 29 H 1.09004 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.58248 * 65.63379 * 4 2 1 31 31 H 1.08998 * 109.70535 * 305.27266 * 4 2 1 32 32 H 1.07999 * 126.45494 * 359.97438 * 9 8 6 33 33 H 1.07997 * 126.06411 * 180.15669 * 10 9 8 34 34 H 1.07997 * 125.56627 * 179.72743 * 11 10 9 35 35 H 1.08994 * 109.58812 * 186.60277 * 14 5 4 36 36 H 1.09003 * 109.58545 * 66.17340 * 14 5 4 37 37 H 1.09003 * 109.49393 * 294.67998 * 15 14 5 38 38 H 1.08999 * 109.52170 * 174.60153 * 15 14 5 39 39 H 0.96997 * 120.00345 * 95.00002 * 18 16 15 40 40 H 0.96996 * 120.00083 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2495 5 7 3.5045 -0.8292 -1.1694 6 6 4.2811 -0.3866 -2.1781 7 8 3.7714 0.1040 -3.1683 8 6 5.7407 -0.4962 -2.0825 9 6 6.6614 0.3394 -2.6783 10 6 7.9306 -0.1269 -2.3216 11 6 7.7668 -1.2205 -1.5394 12 7 6.4407 -1.4554 -1.3863 13 1 6.0500 -2.1788 -0.8717 14 6 4.1053 -1.4268 0.0310 15 6 3.5707 -0.6950 1.2661 16 6 2.0407 -0.7231 1.2484 17 1 1.6966 -1.7572 1.2355 18 7 1.5264 -0.0528 2.4453 19 6 1.3950 -0.7495 3.6169 20 1 1.6707 -1.7927 3.6587 21 6 0.9072 -0.1145 4.7509 22 7 0.5706 1.1569 4.6999 23 14 0.7285 -1.0645 6.3493 24 1 1.1713 -2.4670 6.1438 25 1 1.5654 -0.4295 7.3989 26 1 -0.6939 -1.0525 6.7759 27 1 -0.3634 0.5126 0.8907 28 1 -0.3633 0.5150 -0.8893 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7638 -0.1580 -2.1388 31 1 1.6053 -1.7217 -1.3004 32 1 6.4434 1.1943 -3.3012 33 1 8.8740 0.3054 -2.6206 34 1 8.5628 -1.8093 -1.1081 35 1 5.1895 -1.3246 -0.0135 36 1 3.8375 -2.4819 0.0870 37 1 3.9158 0.3389 1.2541 38 1 3.9333 -1.1891 2.1675 39 1 1.2790 0.8843 2.4079 40 1 0.2301 1.6006 5.4923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035912759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:05 Heat of formation + Delta-G solvation = 14.165661 kcal Electronic energy + Delta-G solvation = -21888.600625 eV Core-core repulsion = 18703.889303 eV Total energy + Delta-G solvation = -3184.711321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47686 -40.68876 -38.95153 -36.27500 -34.57422 -33.14434 -32.03701 -31.17003 -30.32384 -27.61281 -26.75234 -24.81426 -23.19165 -22.82298 -21.76277 -21.10836 -20.86113 -19.12652 -18.68464 -17.59877 -16.84563 -16.53583 -16.42875 -15.70952 -15.53818 -15.13021 -14.91523 -14.77089 -14.66068 -14.33823 -13.97501 -13.64134 -13.55714 -13.19545 -13.12127 -12.93184 -12.89066 -12.76093 -12.49279 -12.12354 -12.08531 -11.88051 -11.68986 -11.22796 -11.18471 -10.88380 -9.95055 -9.80762 -9.14760 -8.97842 -7.91871 -5.20010 0.51771 1.48486 1.48975 1.58412 1.74285 1.85480 2.10959 2.43787 2.57746 3.41553 3.47809 3.76051 3.78336 3.90712 4.01336 4.21476 4.29551 4.34986 4.42345 4.43371 4.55327 4.58443 4.70438 4.74814 4.77435 4.90018 4.97681 5.11856 5.15617 5.23889 5.30942 5.36163 5.45944 5.54517 5.58205 5.78550 5.95084 6.27727 6.29826 6.53878 6.99421 7.35857 8.11272 8.34616 9.32014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.004423 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.135132 B = 6329.032954 C = 7110.928309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.049 0.951 4 C 0.127 3.873 5 N -0.603 5.603 6 C 0.584 3.416 7 O -0.577 6.577 8 C -0.078 4.078 9 C -0.132 4.132 10 C -0.225 4.225 11 C 0.038 3.962 12 N -0.533 5.533 13 H 0.431 0.569 14 C 0.096 3.904 15 C -0.141 4.141 16 C 0.180 3.820 17 H 0.054 0.946 18 N -0.732 5.732 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.076 4.076 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.298 1.298 26 H -0.298 1.298 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.215 0.785 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.370 0.630 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.324 -8.822 -12.568 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.067 0.933 4 C 0.004 3.996 5 N -0.335 5.335 6 C 0.374 3.626 7 O -0.457 6.457 8 C -0.190 4.190 9 C -0.159 4.159 10 C -0.249 4.249 11 C -0.098 4.098 12 N -0.135 5.135 13 H 0.276 0.724 14 C -0.027 4.027 15 C -0.182 4.182 16 C 0.071 3.929 17 H 0.072 0.928 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.098 0.902 21 C -0.268 4.268 22 N -0.623 5.623 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.225 1.225 26 H -0.226 1.226 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.231 0.769 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.201 0.799 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.915 -8.881 -12.868 20.279 hybrid contribution -0.697 0.320 1.408 1.603 sum 12.218 -8.561 -11.460 18.812 Atomic orbital electron populations 1.21571 0.93714 1.02204 1.01232 1.21616 0.96867 0.98978 0.94629 0.93277 1.21659 0.78349 1.01688 0.97868 1.48142 1.07233 1.60135 1.17949 1.17514 0.85451 0.77287 0.82312 1.90777 1.74886 1.47530 1.32543 1.20104 0.90688 0.99680 1.08552 1.21494 0.92769 1.00294 1.01322 1.21202 0.97740 1.00150 1.05768 1.22801 0.85226 0.99948 1.01849 1.42776 1.06956 1.24423 1.39371 0.72395 1.22357 0.99090 0.98284 0.82920 1.22457 0.98641 0.99812 0.97251 1.20426 0.91481 0.95551 0.85435 0.92831 1.42610 1.76843 1.10846 1.06789 1.19656 1.33704 0.94484 0.88404 0.90160 1.25498 1.03109 0.96870 1.01334 1.69831 1.52039 1.11216 1.29211 0.85146 0.76553 0.78418 0.80096 1.18646 1.22547 1.22591 0.94074 0.91741 0.91983 0.89774 0.89189 0.84728 0.81990 0.76887 0.88040 0.88227 0.94213 0.90933 0.79873 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.03 71.98 0.65 -3.50 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.32 16 3 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.13 3.53 5.72 86.36 0.49 4.03 16 5 N -0.60 -16.34 2.97 -823.61 -2.45 -18.79 16 6 C 0.58 17.83 7.63 86.45 0.66 18.49 16 7 O -0.58 -21.66 16.41 -4.33 -0.07 -21.73 16 8 C -0.08 -1.96 6.37 40.35 0.26 -1.71 16 9 C -0.13 -3.23 10.77 22.57 0.24 -2.98 16 10 C -0.23 -3.95 10.81 22.01 0.24 -3.71 16 11 C 0.04 0.50 11.89 83.48 0.99 1.49 16 12 N -0.53 -8.89 4.74 -183.62 -0.87 -9.76 16 13 H 0.43 5.06 6.47 -92.71 -0.60 4.46 16 14 C 0.10 2.17 5.57 86.36 0.48 2.65 16 15 C -0.14 -4.42 5.66 30.67 0.17 -4.25 16 16 C 0.18 6.52 2.19 45.02 0.10 6.62 16 17 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 18 N -0.73 -35.04 4.41 -322.82 -1.42 -36.46 16 19 C -0.23 -12.10 9.93 84.03 0.83 -11.26 16 20 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 22 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 23 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H 0.04 1.59 7.36 -2.39 -0.02 1.58 16 28 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.51 7.00 -2.38 -0.02 2.49 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.10 1.88 3.87 -2.39 -0.01 1.88 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.37 19.71 7.51 -92.71 -0.70 19.02 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -71.09 323.58 2.82 -68.26 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.24 Total: 31.30 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.56 Total: -1.23 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -4.46 Total: -123.46 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.07 Total: -21.73 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.09 2.82 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035912759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.431 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds