Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.70126 * 2 1 4 4 C 1.53194 * 109.58673 * 239.64066 * 2 1 3 5 5 C 1.53041 * 109.31262 * 185.57708 * 4 2 1 6 6 H 1.08993 * 109.46000 * 301.34802 * 5 4 2 7 7 N 1.46500 * 109.45795 * 181.38420 * 5 4 2 8 8 C 1.36941 * 119.99607 * 155.00141 * 7 5 4 9 9 H 1.07999 * 120.00023 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99877 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00161 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99719 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47049 * 90.00554 * 12 10 8 14 14 H 1.48499 * 109.47137 * 210.00116 * 12 10 8 15 15 H 1.48496 * 109.47562 * 330.00411 * 12 10 8 16 16 C 1.53044 * 109.53747 * 61.36502 * 5 4 2 17 17 C 1.53623 * 109.24339 * 298.50857 * 16 5 4 18 18 N 1.46926 * 109.58607 * 120.34943 * 2 1 3 19 19 C 1.34772 * 120.63272 * 353.37879 * 18 2 1 20 20 O 1.21691 * 120.00293 * 9.10630 * 19 18 2 21 21 C 1.46685 * 120.00196 * 189.11437 * 19 18 2 22 22 C 1.37864 * 126.23514 * 209.44076 * 21 19 18 23 23 C 1.39832 * 107.08762 * 179.97438 * 22 21 19 24 24 C 1.35453 * 107.86197 * 359.97438 * 23 22 21 25 25 N 1.35527 * 108.87320 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.67717 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.47298 * 302.17359 * 1 2 3 28 28 H 1.08992 * 109.47371 * 62.17655 * 1 2 3 29 29 H 1.09008 * 109.47343 * 182.17920 * 1 2 3 30 30 H 1.09004 * 109.49780 * 305.52551 * 4 2 1 31 31 H 1.08998 * 109.49764 * 65.59331 * 4 2 1 32 32 H 0.96994 * 120.00315 * 335.00114 * 7 5 4 33 33 H 0.96997 * 120.00348 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49993 * 58.58641 * 16 5 4 35 35 H 1.08996 * 109.49907 * 178.68073 * 16 5 4 36 36 H 1.08998 * 109.74164 * 295.12281 * 17 16 5 37 37 H 1.08996 * 109.66496 * 174.54369 * 17 16 5 38 38 H 1.08002 * 126.46105 * 359.97438 * 22 21 19 39 39 H 1.08000 * 126.07321 * 179.73848 * 23 22 21 40 40 H 1.08011 * 125.56343 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0061 0.1472 -1.0993 7 7 4.0651 -1.5159 -2.3753 8 6 5.3497 -1.2989 -2.7973 9 1 5.9957 -0.6351 -2.2420 10 6 5.8211 -1.9313 -3.9396 11 7 7.0558 -1.7232 -4.3450 12 14 4.7034 -3.0788 -4.9005 13 1 3.9690 -2.3045 -5.9332 14 1 5.5207 -4.1299 -5.5581 15 1 3.7321 -3.7143 -3.9743 16 6 3.9569 -1.6657 0.0636 17 6 3.4657 -0.9419 1.3265 18 7 2.0225 -0.6994 1.1945 19 6 1.1674 -1.1060 2.1536 20 8 -0.0331 -1.0461 1.9638 21 6 1.6838 -1.6207 3.4265 22 6 1.0720 -2.5534 4.2367 23 6 1.9080 -2.7506 5.3401 24 6 2.9921 -1.9530 5.1878 25 7 2.8680 -1.2611 4.0291 26 1 3.5075 -0.6197 3.6819 27 1 -0.3634 0.5472 0.8699 28 1 -0.3634 0.4796 -0.9088 29 1 -0.3634 -1.0270 0.0391 30 1 1.6030 -1.7255 -1.2912 31 1 1.7655 -0.1673 -2.1368 32 1 3.4848 -2.1118 -2.8743 33 1 7.3854 -2.1653 -5.1429 34 1 3.4983 -2.6528 0.0055 35 1 5.0411 -1.7696 0.1038 36 1 3.9877 0.0091 1.4323 37 1 3.6532 -1.5636 2.2019 38 1 0.1254 -3.0402 4.0537 39 1 1.7206 -3.4174 6.1688 40 1 3.8200 -1.8797 5.8776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044460730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = 47.161926 kcal Electronic energy + Delta-G solvation = -21997.995877 eV Core-core repulsion = 18814.715381 eV Total energy + Delta-G solvation = -3183.280496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59178 -39.86163 -37.45551 -34.74270 -32.99467 -32.01874 -31.13706 -30.01285 -29.04149 -27.15085 -24.55718 -23.06665 -22.90125 -21.28985 -20.44148 -20.24669 -19.89981 -17.84029 -17.43457 -16.10778 -15.88481 -15.52924 -14.89994 -14.27494 -14.07176 -14.04146 -13.83168 -13.60614 -13.52655 -13.02059 -12.71396 -12.50570 -12.34950 -12.34785 -12.21392 -11.90815 -11.54980 -11.05769 -10.99317 -10.93690 -10.59937 -10.32374 -9.97347 -9.65281 -9.22317 -9.13765 -8.97681 -8.60471 -8.30960 -7.34754 -5.83484 -3.19603 1.45155 2.59497 2.85377 2.94632 3.34138 3.37669 3.38371 3.42330 4.50085 4.54078 4.84747 4.90215 4.93477 5.09256 5.16615 5.20783 5.31839 5.34807 5.37543 5.50674 5.64893 5.74836 5.86635 5.93855 5.96446 5.97979 6.01891 6.20556 6.28934 6.31084 6.37806 6.61267 6.62844 6.73527 6.79546 6.87789 7.20612 7.41541 7.91390 8.15184 8.35579 9.13637 9.86593 10.06282 11.34659 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.004549 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.629586 B = 6154.389044 C = 6755.559575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.247 4.247 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.148 4.148 17 C 0.094 3.906 18 N -0.604 5.604 19 C 0.587 3.413 20 O -0.526 6.526 21 C -0.047 4.047 22 C -0.118 4.118 23 C -0.211 4.211 24 C 0.013 3.987 25 N -0.540 5.540 26 H 0.419 0.581 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 1.860 17.890 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.074 0.926 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.189 4.189 17 C -0.029 4.029 18 N -0.338 5.338 19 C 0.376 3.624 20 O -0.403 6.403 21 C -0.160 4.160 22 C -0.144 4.144 23 C -0.236 4.236 24 C -0.122 4.122 25 N -0.138 5.138 26 H 0.259 0.741 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.194 0.806 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.801 2.112 17.613 20.267 hybrid contribution -0.066 -0.719 -0.866 1.127 sum -9.867 1.394 16.748 19.488 Atomic orbital electron populations 1.22218 0.92631 1.03855 1.00640 1.21315 0.95587 0.94926 0.83535 0.90834 1.22352 0.97423 1.01134 0.96964 1.20131 0.90863 0.95272 0.86322 0.92562 1.42791 1.13191 1.54879 1.28066 1.19053 0.87688 1.23483 1.07407 0.89212 1.24663 0.96088 1.00008 0.98169 1.69694 1.15078 1.47127 1.26142 0.86566 0.80362 0.81279 0.80406 1.21000 1.21711 1.20345 1.22692 1.02067 0.99867 0.94299 1.22207 0.79753 1.00471 1.00481 1.48161 1.07446 1.57692 1.20469 1.17205 0.85932 0.77323 0.81969 1.90879 1.14830 1.54548 1.80010 1.20566 0.90206 1.07129 0.98116 1.21266 1.00263 0.98772 0.94108 1.20871 0.96184 1.05256 1.01241 1.22046 1.01734 0.97932 0.90523 1.42510 1.17862 1.34800 1.18658 0.74109 0.91447 0.93657 0.90824 0.91730 0.90404 0.80579 0.92996 0.92070 0.90143 0.91307 0.90149 0.83835 0.84110 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.59 37.16 0.28 -1.58 16 2 C 0.15 2.03 3.49 -67.60 -0.24 1.80 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 6 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 7 N -0.75 -17.04 4.93 -53.38 -0.26 -17.31 16 8 C -0.25 -6.70 10.41 -15.06 -0.16 -6.86 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 12 Si 0.88 21.87 27.73 -169.99 -4.71 17.16 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 16 C -0.15 -2.36 5.67 -26.39 -0.15 -2.51 16 17 C 0.09 1.15 5.31 -3.48 -0.02 1.13 16 18 N -0.60 -8.07 2.97 -166.48 -0.49 -8.56 16 19 C 0.59 8.44 7.51 -12.85 -0.10 8.35 16 20 O -0.53 -8.74 12.43 5.20 0.06 -8.67 16 21 C -0.05 -0.59 6.16 -81.98 -0.51 -1.09 16 22 C -0.12 -1.42 10.77 -39.12 -0.42 -1.84 16 23 C -0.21 -2.05 10.81 -39.98 -0.43 -2.48 16 24 C 0.01 0.11 11.89 -16.91 -0.20 -0.09 16 25 N -0.54 -5.09 4.69 -9.39 -0.04 -5.13 16 26 H 0.42 3.10 7.07 -40.82 -0.29 2.82 16 27 H 0.07 0.97 6.76 -51.93 -0.35 0.61 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.13 6.74 -51.92 -0.35 0.78 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.87 4.77 -51.93 -0.25 0.62 16 38 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -32.49 316.74 -7.95 -40.44 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.71 Total: 9.53 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.34 Total: -4.26 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.03 Total: -58.96 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.06 Total: -8.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.49 -7.95 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044460730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.604 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds