Wall clock time and date at job start Mon Mar 30 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.70126 * 2 1 4 4 C 1.53194 * 109.58673 * 239.64066 * 2 1 3 5 5 C 1.53041 * 109.31262 * 185.57708 * 4 2 1 6 6 H 1.08993 * 109.46000 * 301.34802 * 5 4 2 7 7 N 1.46500 * 109.45795 * 181.38420 * 5 4 2 8 8 C 1.36941 * 119.99607 * 155.00141 * 7 5 4 9 9 H 1.07999 * 120.00023 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99877 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00161 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99719 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47049 * 90.00554 * 12 10 8 14 14 H 1.48499 * 109.47137 * 210.00116 * 12 10 8 15 15 H 1.48496 * 109.47562 * 330.00411 * 12 10 8 16 16 C 1.53044 * 109.53747 * 61.36502 * 5 4 2 17 17 C 1.53623 * 109.24339 * 298.50857 * 16 5 4 18 18 N 1.46926 * 109.58607 * 120.34943 * 2 1 3 19 19 C 1.34772 * 120.63272 * 353.37879 * 18 2 1 20 20 O 1.21691 * 120.00293 * 9.10630 * 19 18 2 21 21 C 1.46685 * 120.00196 * 189.11437 * 19 18 2 22 22 C 1.37864 * 126.23514 * 209.44076 * 21 19 18 23 23 C 1.39832 * 107.08762 * 179.97438 * 22 21 19 24 24 C 1.35453 * 107.86197 * 359.97438 * 23 22 21 25 25 N 1.35527 * 108.87320 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.67717 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.47298 * 302.17359 * 1 2 3 28 28 H 1.08992 * 109.47371 * 62.17655 * 1 2 3 29 29 H 1.09008 * 109.47343 * 182.17920 * 1 2 3 30 30 H 1.09004 * 109.49780 * 305.52551 * 4 2 1 31 31 H 1.08998 * 109.49764 * 65.59331 * 4 2 1 32 32 H 0.96994 * 120.00315 * 335.00114 * 7 5 4 33 33 H 0.96997 * 120.00348 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49993 * 58.58641 * 16 5 4 35 35 H 1.08996 * 109.49907 * 178.68073 * 16 5 4 36 36 H 1.08998 * 109.74164 * 295.12281 * 17 16 5 37 37 H 1.08996 * 109.66496 * 174.54369 * 17 16 5 38 38 H 1.08002 * 126.46105 * 359.97438 * 22 21 19 39 39 H 1.08000 * 126.07321 * 179.73848 * 23 22 21 40 40 H 1.08011 * 125.56343 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0061 0.1472 -1.0993 7 7 4.0651 -1.5159 -2.3753 8 6 5.3497 -1.2989 -2.7973 9 1 5.9957 -0.6351 -2.2420 10 6 5.8211 -1.9313 -3.9396 11 7 7.0558 -1.7232 -4.3450 12 14 4.7034 -3.0788 -4.9005 13 1 3.9690 -2.3045 -5.9332 14 1 5.5207 -4.1299 -5.5581 15 1 3.7321 -3.7143 -3.9743 16 6 3.9569 -1.6657 0.0636 17 6 3.4657 -0.9419 1.3265 18 7 2.0225 -0.6994 1.1945 19 6 1.1674 -1.1060 2.1536 20 8 -0.0331 -1.0461 1.9638 21 6 1.6838 -1.6207 3.4265 22 6 1.0720 -2.5534 4.2367 23 6 1.9080 -2.7506 5.3401 24 6 2.9921 -1.9530 5.1878 25 7 2.8680 -1.2611 4.0291 26 1 3.5075 -0.6197 3.6819 27 1 -0.3634 0.5472 0.8699 28 1 -0.3634 0.4796 -0.9088 29 1 -0.3634 -1.0270 0.0391 30 1 1.6030 -1.7255 -1.2912 31 1 1.7655 -0.1673 -2.1368 32 1 3.4848 -2.1118 -2.8743 33 1 7.3854 -2.1653 -5.1429 34 1 3.4983 -2.6528 0.0055 35 1 5.0411 -1.7696 0.1038 36 1 3.9877 0.0091 1.4323 37 1 3.6532 -1.5636 2.2019 38 1 0.1254 -3.0402 4.0537 39 1 1.7206 -3.4174 6.1688 40 1 3.8200 -1.8797 5.8776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044460730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:27 Heat of formation + Delta-G solvation = 25.734026 kcal Electronic energy + Delta-G solvation = -21998.925060 eV Core-core repulsion = 18814.715381 eV Total energy + Delta-G solvation = -3184.209679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.46283 -40.89397 -38.75541 -36.34373 -34.18946 -33.79537 -31.96211 -31.60863 -30.01084 -28.37005 -26.03110 -24.53629 -24.07357 -22.37828 -21.57595 -21.27284 -20.90459 -19.67210 -18.57743 -17.17049 -16.90688 -16.72300 -16.59190 -15.93122 -15.34401 -15.05013 -14.81868 -14.72867 -14.67227 -14.56910 -14.07014 -13.83937 -13.44031 -13.40636 -13.16827 -13.12430 -13.00761 -12.75821 -12.62641 -12.17046 -12.10077 -11.98883 -11.80466 -11.42433 -10.96939 -10.33689 -9.91624 -9.70535 -9.33898 -9.11934 -8.03109 -5.36045 0.55452 1.37537 1.38630 1.45846 1.77786 1.86197 2.13680 2.47125 2.47853 3.28307 3.43841 3.54613 3.79574 3.91703 4.01681 4.15582 4.26337 4.36155 4.42856 4.45147 4.54095 4.55890 4.57780 4.64146 4.81048 4.92260 4.98477 5.08912 5.14106 5.21669 5.29552 5.37635 5.42193 5.64229 5.76777 5.81867 5.97992 6.21146 6.34357 6.57429 7.06749 7.08329 7.83369 8.01325 9.18180 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.004549 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.629586 B = 6154.389044 C = 6755.559575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.055 0.945 7 N -0.753 5.753 8 C -0.225 4.225 9 H 0.064 0.936 10 C -0.060 4.060 11 N -0.982 5.982 12 Si 0.948 3.052 13 H -0.279 1.279 14 H -0.298 1.298 15 H -0.259 1.259 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.604 5.604 19 C 0.584 3.416 20 O -0.557 6.557 21 C -0.078 4.078 22 C -0.133 4.133 23 C -0.227 4.227 24 C 0.036 3.964 25 N -0.532 5.532 26 H 0.429 0.571 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.362 0.638 33 H 0.257 0.743 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 1.973 19.749 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.073 0.927 7 N -0.395 5.395 8 C -0.356 4.356 9 H 0.082 0.918 10 C -0.252 4.252 11 N -0.633 5.633 12 Si 0.777 3.223 13 H -0.205 1.205 14 H -0.225 1.225 15 H -0.184 1.184 16 C -0.181 4.181 17 C -0.019 4.019 18 N -0.337 5.337 19 C 0.375 3.625 20 O -0.436 6.436 21 C -0.191 4.191 22 C -0.160 4.160 23 C -0.250 4.250 24 C -0.100 4.100 25 N -0.132 5.132 26 H 0.271 0.729 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.347 2.244 19.513 22.200 hybrid contribution 0.107 -0.718 -1.303 1.491 sum -10.240 1.527 18.210 20.947 Atomic orbital electron populations 1.22059 0.92549 1.02571 1.01057 1.21317 0.95560 0.95516 0.82769 0.89020 1.22229 0.95249 1.01031 0.98313 1.20385 0.92455 0.94950 0.85293 0.92705 1.42855 1.11651 1.55294 1.29717 1.19040 0.88876 1.21399 1.06291 0.91792 1.25396 0.97512 1.02487 0.99789 1.69857 1.17261 1.49172 1.27015 0.85511 0.78645 0.79070 0.79123 1.20526 1.22456 1.18356 1.22486 1.01105 0.99264 0.95233 1.22203 0.79113 1.01636 0.98933 1.48178 1.07783 1.57471 1.20229 1.17483 0.85628 0.76761 0.82669 1.90861 1.16106 1.55844 1.80798 1.20303 0.92020 1.08670 0.98062 1.21463 1.00487 0.98922 0.95151 1.21183 0.96322 1.06284 1.01214 1.22736 1.01875 0.95617 0.89791 1.42498 1.17013 1.34872 1.18772 0.72907 0.92120 0.92134 0.92887 0.92669 0.90008 0.80503 0.93417 0.93422 0.91525 0.88716 0.88373 0.84730 0.82216 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 7.59 71.98 0.55 -2.75 16 2 C 0.15 3.86 3.49 44.97 0.16 4.02 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.13 -3.82 4.84 30.67 0.15 -3.67 16 5 C 0.18 6.16 2.73 45.02 0.12 6.29 16 6 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 7 N -0.75 -33.77 4.93 -322.81 -1.59 -35.36 16 8 C -0.23 -12.31 10.41 84.03 0.87 -11.43 16 9 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 10 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 11 N -0.98 -61.79 13.97 21.65 0.30 -61.49 16 12 Si 0.95 45.29 27.73 68.60 1.90 47.19 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 14 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 15 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 16 C -0.14 -4.29 5.67 30.82 0.17 -4.12 16 17 C 0.10 2.28 5.31 86.51 0.46 2.74 16 18 N -0.60 -15.12 2.97 -798.85 -2.37 -17.49 16 19 C 0.58 16.26 7.51 86.45 0.65 16.91 16 20 O -0.56 -18.52 12.43 -4.32 -0.05 -18.57 16 21 C -0.08 -1.82 6.16 40.35 0.25 -1.58 16 22 C -0.13 -3.07 10.77 22.57 0.24 -2.83 16 23 C -0.23 -3.80 10.81 22.01 0.24 -3.56 16 24 C 0.04 0.46 11.89 83.48 0.99 1.45 16 25 N -0.53 -8.39 4.69 -183.62 -0.86 -9.25 16 26 H 0.43 4.81 7.07 -92.71 -0.66 4.15 16 27 H 0.06 1.69 6.76 -2.39 -0.02 1.67 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.62 6.74 -2.38 -0.02 1.60 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.36 16.08 5.66 -92.71 -0.52 15.56 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.84 4.77 -2.39 -0.01 1.83 16 38 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -71.75 316.74 2.47 -69.28 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.18 Total: 27.21 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.32 Total: -1.53 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -4.52 Total: -123.59 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -71.75 2.47 -69.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044460730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.015 kcal (2) G-P(sol) polarization free energy of solvation -71.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds