Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58339 * 2 1 4 4 C 1.53196 * 109.58738 * 120.28028 * 2 1 3 5 5 C 1.53044 * 109.33522 * 65.13875 * 4 2 1 6 6 H 1.09004 * 109.46052 * 301.35824 * 5 4 2 7 7 N 1.46500 * 109.45818 * 181.40204 * 5 4 2 8 8 C 1.36933 * 119.99994 * 154.99445 * 7 5 4 9 9 H 1.08002 * 120.00086 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00076 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99948 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99905 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46828 * 90.00146 * 12 10 8 14 14 H 1.48499 * 109.47322 * 209.99775 * 12 10 8 15 15 H 1.48494 * 109.47040 * 329.99972 * 12 10 8 16 16 C 1.53096 * 109.50527 * 61.34637 * 5 4 2 17 17 C 1.53194 * 109.33448 * 298.65719 * 16 5 4 18 18 N 1.46924 * 109.58946 * 239.57422 * 2 1 3 19 19 C 1.34772 * 120.63385 * 113.84194 * 18 2 1 20 20 O 1.21623 * 119.99947 * 356.28346 * 19 18 2 21 21 C 1.47259 * 120.00087 * 176.28517 * 19 18 2 22 22 C 1.46697 * 126.94205 * 42.12321 * 21 19 18 23 23 C 1.34490 * 106.33065 * 179.97438 * 22 21 19 24 24 N 1.36443 * 108.85566 * 0.02562 * 23 22 21 25 25 H 0.97007 * 124.84779 * 180.02562 * 24 23 22 26 26 C 1.34664 * 110.30041 * 359.72452 * 24 23 22 27 27 H 1.09000 * 109.47116 * 299.71805 * 1 2 3 28 28 H 1.09000 * 109.47078 * 59.71814 * 1 2 3 29 29 H 1.08998 * 109.47224 * 179.71753 * 1 2 3 30 30 H 1.09000 * 109.49550 * 185.10435 * 4 2 1 31 31 H 1.08996 * 109.49582 * 305.17047 * 4 2 1 32 32 H 0.96996 * 120.00199 * 335.00194 * 7 5 4 33 33 H 0.96997 * 119.99719 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.49307 * 178.69793 * 16 5 4 35 35 H 1.09000 * 109.51769 * 58.62972 * 16 5 4 36 36 H 1.08999 * 109.58340 * 294.84985 * 17 16 5 37 37 H 1.08994 * 109.70378 * 174.49023 * 17 16 5 38 38 H 1.07994 * 126.83154 * 0.03654 * 22 21 19 39 39 H 1.07996 * 125.56564 * 179.97438 * 23 22 21 40 40 H 1.08005 * 125.79913 * 180.29976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 1.6414 -2.2026 1.1737 6 1 0.5565 -2.2802 1.1030 7 7 2.1022 -2.8941 2.3803 8 6 1.4648 -4.0294 2.8044 9 1 0.6226 -4.4153 2.2493 10 6 1.9018 -4.6849 3.9474 11 7 1.2894 -5.7764 4.3547 12 14 3.3589 -4.0179 4.9072 13 1 2.8774 -3.0643 5.9387 14 1 4.0735 -5.1406 5.5661 15 1 4.2841 -3.3185 3.9799 16 6 2.2800 -2.8464 -0.0598 17 6 1.7692 -2.1427 -1.3210 18 7 2.0226 -0.7010 -1.1936 19 6 2.6944 -0.0344 -2.1531 20 8 2.8395 1.1702 -2.0688 21 6 3.2529 -0.7646 -3.3035 22 6 2.6056 -1.8389 -4.0644 23 6 3.4792 -2.2054 -5.0191 24 7 4.6052 -1.4438 -4.9024 25 1 5.3845 -1.5152 -5.4756 26 6 4.4775 -0.5744 -3.8820 27 1 -0.3633 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8874 29 1 -0.3633 -1.0276 -0.0051 30 1 3.1297 -0.6486 1.2922 31 1 1.6079 -0.2753 2.1372 32 1 2.8588 -2.5477 2.8788 33 1 1.5945 -6.2342 5.1536 34 1 2.0123 -3.9024 -0.0987 35 1 3.3640 -2.7479 -0.0021 36 1 0.6987 -2.3174 -1.4287 37 1 2.2924 -2.5297 -2.1953 38 1 1.6229 -2.2524 -3.8928 39 1 3.3162 -2.9771 -5.7568 40 1 5.2173 0.1488 -3.5718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044609352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 30.495136 kcal Electronic energy + Delta-G solvation = -21936.456426 eV Core-core repulsion = 18752.453204 eV Total energy + Delta-G solvation = -3184.003222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30290 -39.69291 -37.38676 -34.58899 -32.74922 -31.79333 -30.70258 -29.74484 -29.20414 -27.34324 -24.38050 -23.21271 -22.81275 -21.04107 -20.83595 -19.67594 -18.96050 -18.11805 -17.25458 -16.34405 -15.44510 -15.02660 -14.84904 -14.17769 -14.02869 -13.97694 -13.76545 -13.59842 -13.44639 -13.03582 -12.78414 -12.69734 -12.46630 -12.06401 -11.84787 -11.64543 -11.31779 -10.97973 -10.86478 -10.75073 -10.45962 -10.18447 -9.71555 -9.64688 -9.56544 -8.95648 -8.79064 -8.55105 -8.30357 -7.24970 -5.76309 -3.11300 1.87406 2.31764 2.95719 3.26525 3.38729 3.42336 3.46247 3.48411 4.60333 4.73983 4.89478 4.98476 5.12545 5.20479 5.27591 5.35570 5.39389 5.51149 5.60922 5.67668 5.73658 5.79829 5.84346 5.89233 5.92864 6.11705 6.17011 6.29693 6.36514 6.46530 6.50006 6.57107 6.67306 6.78935 6.94371 7.03909 7.26667 7.70738 8.00288 8.43150 8.44575 9.21921 9.94952 10.15261 11.42133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.004608 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.434057 B = 6074.456107 C = 6541.585141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.095 0.905 4 C -0.137 4.137 5 C 0.183 3.817 6 H 0.059 0.941 7 N -0.749 5.749 8 C -0.241 4.241 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.278 1.278 16 C -0.149 4.149 17 C 0.096 3.904 18 N -0.594 5.594 19 C 0.591 3.409 20 O -0.559 6.559 21 C -0.221 4.221 22 C -0.170 4.170 23 C -0.017 4.017 24 N -0.556 5.556 25 H 0.416 0.584 26 C 0.059 3.941 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 9.048 -19.033 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.391 5.391 8 C -0.371 4.371 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.583 5.583 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.190 4.190 17 C -0.026 4.026 18 N -0.325 5.325 19 C 0.380 3.620 20 O -0.439 6.439 21 C -0.231 4.231 22 C -0.195 4.195 23 C -0.145 4.145 24 N -0.151 5.151 25 H 0.252 0.748 26 C -0.076 4.076 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.166 0.834 39 H 0.186 0.814 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.522 9.433 -19.009 21.697 hybrid contribution 1.418 0.083 0.569 1.530 sum 5.939 9.516 -18.440 21.584 Atomic orbital electron populations 1.22143 0.95018 1.02826 1.01895 1.21126 0.94112 0.96984 0.83847 0.88730 1.22252 1.01158 0.97333 0.96843 1.20205 0.97381 0.88806 0.86285 0.92262 1.42815 1.37530 1.30616 1.28128 1.19074 1.11032 0.99871 1.07121 0.89185 1.24656 0.98942 0.97272 0.98244 1.69700 1.42854 1.19651 1.26084 0.86566 0.83570 0.78108 0.80388 1.21094 1.21836 1.20392 1.22612 1.00866 1.00717 0.94837 1.22169 1.00828 0.79307 1.00345 1.48046 1.54902 1.09615 1.19982 1.17468 0.77138 0.86064 0.81306 1.90738 1.60476 1.14184 1.78499 1.20355 0.97320 1.03758 1.01682 1.22096 1.00562 0.99095 0.97707 1.21787 0.87789 1.01108 1.03807 1.41587 1.16456 1.29774 1.27269 0.74757 1.21683 0.98798 0.96310 0.90807 0.91438 0.92791 0.91585 0.92067 0.90590 0.80737 0.93110 0.90465 0.92506 0.91760 0.88553 0.83374 0.81407 0.81074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.02 37.16 0.34 -1.79 16 2 C 0.14 2.12 3.19 -67.60 -0.22 1.91 16 3 H 0.09 1.47 7.03 -51.93 -0.37 1.11 16 4 C -0.14 -2.23 5.02 -26.61 -0.13 -2.36 16 5 C 0.18 3.43 2.53 -67.86 -0.17 3.25 16 6 H 0.06 1.14 6.45 -51.93 -0.33 0.81 16 7 N -0.75 -17.50 4.93 -53.35 -0.26 -17.76 16 8 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 9 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 10 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 11 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 12 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 16 C -0.15 -2.53 5.66 -26.58 -0.15 -2.68 16 17 C 0.10 1.33 5.37 -3.71 -0.02 1.31 16 18 N -0.59 -8.79 2.68 -166.54 -0.45 -9.24 16 19 C 0.59 9.30 7.61 -12.60 -0.10 9.21 16 20 O -0.56 -10.41 16.52 5.26 0.09 -10.32 16 21 C -0.22 -2.86 5.47 -103.35 -0.56 -3.43 16 22 C -0.17 -1.80 8.64 -37.49 -0.32 -2.12 16 23 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 24 N -0.56 -4.12 5.90 -12.85 -0.08 -4.20 16 25 H 0.42 1.59 8.96 -40.82 -0.37 1.23 16 26 C 0.06 0.62 11.87 -16.84 -0.20 0.42 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.90 5.72 -51.93 -0.30 0.60 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 37 H 0.10 1.20 4.07 -51.93 -0.21 0.99 16 38 H 0.15 1.41 7.20 -52.49 -0.38 1.03 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -34.59 318.54 -7.38 -41.96 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.54 Total: 9.13 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.99 Total: -3.42 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.01 Total: -59.58 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.59 -7.38 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044609352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.456 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds