Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.58403 * 2 1 4 4 C 1.53163 * 109.58532 * 239.56642 * 2 1 3 5 5 C 1.53042 * 109.32177 * 185.57202 * 4 2 1 6 6 H 1.09002 * 109.45913 * 181.38932 * 5 4 2 7 7 N 1.46501 * 109.46108 * 301.35746 * 5 4 2 8 8 C 1.36941 * 120.00064 * 205.02457 * 7 5 4 9 9 H 1.07996 * 119.99903 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00095 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99999 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99984 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47245 * 60.00000 * 12 10 8 14 14 H 1.48505 * 109.47204 * 300.00245 * 12 10 8 15 15 H 1.48497 * 109.47206 * 180.02562 * 12 10 8 16 16 C 1.53035 * 109.52856 * 61.37271 * 5 4 2 17 17 C 1.53193 * 109.31562 * 298.63841 * 16 5 4 18 18 N 1.46928 * 109.58223 * 120.28597 * 2 1 3 19 19 C 1.34767 * 120.63274 * 353.41665 * 18 2 1 20 20 O 1.21626 * 120.00184 * 358.06992 * 19 18 2 21 21 C 1.47261 * 120.00167 * 178.07334 * 19 18 2 22 22 C 1.46698 * 126.93917 * 26.76491 * 21 19 18 23 23 C 1.34484 * 106.32854 * 179.89065 * 22 21 19 24 24 N 1.36445 * 108.85971 * 0.37803 * 23 22 21 25 25 H 0.96998 * 124.85271 * 179.77475 * 24 23 22 26 26 C 1.34654 * 110.29814 * 359.74671 * 24 23 22 27 27 H 1.09003 * 109.47320 * 306.27392 * 1 2 3 28 28 H 1.09007 * 109.47017 * 66.26521 * 1 2 3 29 29 H 1.08996 * 109.47202 * 186.26855 * 1 2 3 30 30 H 1.08997 * 109.48349 * 65.62668 * 4 2 1 31 31 H 1.08992 * 109.50525 * 305.52954 * 4 2 1 32 32 H 0.96995 * 120.00188 * 25.03129 * 7 5 4 33 33 H 0.97006 * 120.00067 * 0.02562 * 11 10 8 34 34 H 1.09001 * 109.50174 * 58.59259 * 16 5 4 35 35 H 1.09004 * 109.50094 * 178.68451 * 16 5 4 36 36 H 1.08993 * 109.58872 * 174.41739 * 17 16 5 37 37 H 1.08997 * 109.58798 * 294.70663 * 17 16 5 38 38 H 1.07992 * 126.83473 * 0.02562 * 22 21 19 39 39 H 1.08003 * 125.57047 * 180.15580 * 23 22 21 40 40 H 1.08002 * 125.80483 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5674 -0.8494 -1.1691 6 1 3.9375 -1.3475 -2.0652 7 7 4.1570 0.4884 -1.0755 8 6 5.4412 0.7020 -1.5005 9 1 6.0191 -0.1157 -1.9050 10 6 5.9996 1.9698 -1.4124 11 7 5.2951 2.9665 -0.9199 12 14 7.7510 2.2613 -1.9928 13 1 7.8578 1.9217 -3.4345 14 1 8.6801 1.4049 -1.2125 15 1 8.1079 3.6887 -1.7923 16 6 3.9568 -1.6656 0.0655 17 6 3.4651 -0.9453 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1043 2.1545 20 8 -0.0204 -0.8631 2.0522 21 6 1.6708 -1.8402 3.3265 22 6 3.0167 -1.7622 3.9050 23 6 3.0247 -2.5987 4.9579 24 7 1.7978 -3.1863 5.0638 25 1 1.5498 -3.8335 5.7424 26 6 0.9802 -2.7389 4.0919 27 1 -0.3634 0.6080 0.8285 28 1 -0.3633 0.4137 -0.9408 29 1 -0.3633 -1.0215 0.1122 30 1 1.7658 -0.1694 -2.1362 31 1 1.6030 -1.7269 -1.2889 32 1 3.6379 1.2229 -0.7125 33 1 4.3857 2.8150 -0.6182 34 1 3.4983 -2.6528 0.0086 35 1 5.0412 -1.7696 0.1059 36 1 3.6517 -1.5691 2.1990 37 1 3.9921 0.0026 1.4331 38 1 3.8369 -1.1525 3.5562 39 1 3.8660 -2.7790 5.6108 40 1 -0.0466 -3.0385 3.9423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044609357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = 54.426249 kcal Electronic energy + Delta-G solvation = -22394.345380 eV Core-core repulsion = 19211.379888 eV Total energy + Delta-G solvation = -3182.965491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26874 -39.71444 -37.23582 -34.29407 -32.97935 -31.93352 -30.50272 -29.28338 -28.64800 -26.86530 -24.20268 -23.37972 -23.03523 -21.41967 -20.49937 -19.44651 -18.91257 -17.68978 -17.14754 -15.77375 -15.67258 -15.21294 -14.70133 -14.27531 -14.03607 -13.86875 -13.61845 -13.59947 -13.19232 -13.08505 -12.85128 -12.43520 -12.12574 -11.87415 -11.75580 -11.40900 -11.07955 -10.77033 -10.55696 -10.40536 -10.17978 -10.06141 -9.92474 -9.12788 -8.92903 -8.87566 -8.60802 -8.42854 -7.99076 -6.99305 -6.06288 -3.06065 1.90400 2.38604 3.07509 3.48030 3.53077 3.56377 3.71374 3.74079 4.70052 4.86066 4.99291 5.10393 5.34343 5.34619 5.41076 5.50354 5.56818 5.69748 5.74250 5.79719 5.84524 5.93383 5.99034 6.06835 6.21544 6.25129 6.33450 6.51073 6.54403 6.65867 6.66774 6.77589 6.81317 6.85839 6.86486 7.17497 7.33846 7.84648 7.94126 8.66189 8.78749 9.26425 10.12875 10.28887 11.41654 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.005217 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.397287 B = 5366.244474 C = 6132.086269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.178 3.822 6 H 0.049 0.951 7 N -0.733 5.733 8 C -0.328 4.328 9 H 0.063 0.937 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.078 2.922 13 H -0.296 1.296 14 H -0.296 1.296 15 H -0.286 1.286 16 C -0.147 4.147 17 C 0.087 3.913 18 N -0.590 5.590 19 C 0.586 3.414 20 O -0.556 6.556 21 C -0.222 4.222 22 C -0.177 4.177 23 C -0.020 4.020 24 N -0.557 5.557 25 H 0.415 0.585 26 C 0.062 3.938 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.367 0.633 33 H 0.254 0.746 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -13.769 10.613 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.377 5.377 8 C -0.459 4.459 9 H 0.081 0.919 10 C -0.243 4.243 11 N -0.590 5.590 12 Si 0.910 3.090 13 H -0.224 1.224 14 H -0.224 1.224 15 H -0.211 1.211 16 C -0.188 4.188 17 C -0.034 4.034 18 N -0.321 5.321 19 C 0.376 3.624 20 O -0.438 6.438 21 C -0.233 4.233 22 C -0.200 4.200 23 C -0.148 4.148 24 N -0.152 5.152 25 H 0.251 0.749 26 C -0.074 4.074 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.817 -12.712 10.351 17.395 hybrid contribution -1.160 -1.297 0.509 1.813 sum -6.977 -14.010 10.860 19.050 Atomic orbital electron populations 1.22181 0.93175 1.03279 1.00253 1.21190 0.94912 0.95590 0.83936 0.91006 1.22243 0.97428 1.00293 0.97304 1.20137 0.90258 0.87663 0.95120 0.93299 1.42506 1.14016 1.04799 1.76346 1.20033 0.90550 0.96919 1.38424 0.91867 1.25703 1.06007 0.91565 1.00978 1.70885 1.11019 1.32326 1.44736 0.83259 0.74477 0.75845 0.75460 1.22392 1.22380 1.21143 1.22467 1.01166 0.97910 0.97261 1.22494 0.79174 1.01887 0.99885 1.47932 1.07834 1.56706 1.19650 1.17428 0.85238 0.78239 0.81503 1.90786 1.16288 1.58153 1.78536 1.20531 0.95458 1.06095 1.01173 1.22453 0.96676 1.03371 0.97533 1.21835 0.89030 1.01365 1.02533 1.41602 1.11084 1.36407 1.26075 0.74887 1.21707 0.96449 0.98685 0.90521 0.91033 0.94318 0.91723 0.91000 0.92028 0.79904 0.93473 0.93400 0.91069 0.87750 0.90654 0.82322 0.81443 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.60 37.16 0.28 -1.95 16 2 C 0.15 2.65 3.19 -67.61 -0.22 2.43 16 3 H 0.07 1.44 6.65 -51.93 -0.35 1.09 16 4 C -0.13 -2.36 5.07 -26.63 -0.13 -2.50 16 5 C 0.18 3.57 3.10 -67.89 -0.21 3.36 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.73 -17.81 4.31 -53.39 -0.23 -18.04 16 8 C -0.33 -8.98 9.93 -15.06 -0.15 -9.13 16 9 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 11 N -0.94 -28.96 13.70 55.49 0.76 -28.20 16 12 Si 1.08 25.69 29.92 -169.99 -5.09 20.61 16 13 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 C -0.15 -2.61 5.78 -26.61 -0.15 -2.76 16 17 C 0.09 1.50 5.33 -3.71 -0.02 1.48 16 18 N -0.59 -10.32 2.97 -166.55 -0.49 -10.82 16 19 C 0.59 10.19 7.52 -12.60 -0.09 10.09 16 20 O -0.56 -10.63 12.48 5.25 0.07 -10.57 16 21 C -0.22 -3.21 5.87 -103.35 -0.61 -3.81 16 22 C -0.18 -2.21 8.76 -37.49 -0.33 -2.54 16 23 C -0.02 -0.19 11.89 -16.83 -0.20 -0.39 16 24 N -0.56 -4.59 5.90 -12.85 -0.08 -4.66 16 25 H 0.42 1.84 8.96 -40.82 -0.37 1.47 16 26 C 0.06 0.69 11.79 -16.85 -0.20 0.50 16 27 H 0.07 1.30 6.70 -51.93 -0.35 0.95 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.13 6.78 -51.93 -0.35 0.78 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.37 9.31 4.90 -40.82 -0.20 9.11 16 33 H 0.25 7.73 6.78 -40.82 -0.28 7.45 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.11 1.55 3.12 -51.93 -0.16 1.39 16 37 H 0.08 1.50 7.74 -51.93 -0.40 1.09 16 38 H 0.16 2.00 6.02 -52.49 -0.32 1.69 16 39 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -33.43 312.28 -7.83 -41.26 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.35 Total: 12.33 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.13 Total: -6.62 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.04 Total: -61.72 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.43 -7.83 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044609357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.690 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds