Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.58403 * 2 1 4 4 C 1.53163 * 109.58532 * 239.56642 * 2 1 3 5 5 C 1.53042 * 109.32177 * 185.57202 * 4 2 1 6 6 H 1.09002 * 109.45913 * 181.38932 * 5 4 2 7 7 N 1.46501 * 109.46108 * 301.35746 * 5 4 2 8 8 C 1.36941 * 120.00064 * 205.02457 * 7 5 4 9 9 H 1.07996 * 119.99903 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00095 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99999 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99984 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47245 * 60.00000 * 12 10 8 14 14 H 1.48505 * 109.47204 * 300.00245 * 12 10 8 15 15 H 1.48497 * 109.47206 * 180.02562 * 12 10 8 16 16 C 1.53035 * 109.52856 * 61.37271 * 5 4 2 17 17 C 1.53193 * 109.31562 * 298.63841 * 16 5 4 18 18 N 1.46928 * 109.58223 * 120.28597 * 2 1 3 19 19 C 1.34767 * 120.63274 * 353.41665 * 18 2 1 20 20 O 1.21626 * 120.00184 * 358.06992 * 19 18 2 21 21 C 1.47261 * 120.00167 * 178.07334 * 19 18 2 22 22 C 1.46698 * 126.93917 * 26.76491 * 21 19 18 23 23 C 1.34484 * 106.32854 * 179.89065 * 22 21 19 24 24 N 1.36445 * 108.85971 * 0.37803 * 23 22 21 25 25 H 0.96998 * 124.85271 * 179.77475 * 24 23 22 26 26 C 1.34654 * 110.29814 * 359.74671 * 24 23 22 27 27 H 1.09003 * 109.47320 * 306.27392 * 1 2 3 28 28 H 1.09007 * 109.47017 * 66.26521 * 1 2 3 29 29 H 1.08996 * 109.47202 * 186.26855 * 1 2 3 30 30 H 1.08997 * 109.48349 * 65.62668 * 4 2 1 31 31 H 1.08992 * 109.50525 * 305.52954 * 4 2 1 32 32 H 0.96995 * 120.00188 * 25.03129 * 7 5 4 33 33 H 0.97006 * 120.00067 * 0.02562 * 11 10 8 34 34 H 1.09001 * 109.50174 * 58.59259 * 16 5 4 35 35 H 1.09004 * 109.50094 * 178.68451 * 16 5 4 36 36 H 1.08993 * 109.58872 * 174.41739 * 17 16 5 37 37 H 1.08997 * 109.58798 * 294.70663 * 17 16 5 38 38 H 1.07992 * 126.83473 * 0.02562 * 22 21 19 39 39 H 1.08003 * 125.57047 * 180.15580 * 23 22 21 40 40 H 1.08002 * 125.80483 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5674 -0.8494 -1.1691 6 1 3.9375 -1.3475 -2.0652 7 7 4.1570 0.4884 -1.0755 8 6 5.4412 0.7020 -1.5005 9 1 6.0191 -0.1157 -1.9050 10 6 5.9996 1.9698 -1.4124 11 7 5.2951 2.9665 -0.9199 12 14 7.7510 2.2613 -1.9928 13 1 7.8578 1.9217 -3.4345 14 1 8.6801 1.4049 -1.2125 15 1 8.1079 3.6887 -1.7923 16 6 3.9568 -1.6656 0.0655 17 6 3.4651 -0.9453 1.3249 18 7 2.0225 -0.6981 1.1954 19 6 1.1673 -1.1043 2.1545 20 8 -0.0204 -0.8631 2.0522 21 6 1.6708 -1.8402 3.3265 22 6 3.0167 -1.7622 3.9050 23 6 3.0247 -2.5987 4.9579 24 7 1.7978 -3.1863 5.0638 25 1 1.5498 -3.8335 5.7424 26 6 0.9802 -2.7389 4.0919 27 1 -0.3634 0.6080 0.8285 28 1 -0.3633 0.4137 -0.9408 29 1 -0.3633 -1.0215 0.1122 30 1 1.7658 -0.1694 -2.1362 31 1 1.6030 -1.7269 -1.2889 32 1 3.6379 1.2229 -0.7125 33 1 4.3857 2.8150 -0.6182 34 1 3.4983 -2.6528 0.0086 35 1 5.0412 -1.7696 0.1059 36 1 3.6517 -1.5691 2.1990 37 1 3.9921 0.0026 1.4331 38 1 3.8369 -1.1525 3.5562 39 1 3.8660 -2.7790 5.6108 40 1 -0.0466 -3.0385 3.9423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044609357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = 32.354051 kcal Electronic energy + Delta-G solvation = -22395.302502 eV Core-core repulsion = 19211.379888 eV Total energy + Delta-G solvation = -3183.922614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23469 -40.99375 -38.75074 -36.08495 -34.34312 -33.71171 -31.51788 -30.61814 -30.05129 -28.33451 -25.66056 -25.43864 -24.27899 -22.69619 -21.49179 -20.84255 -19.92100 -19.33911 -18.72337 -17.16864 -17.02934 -16.76455 -16.21155 -15.86141 -15.45529 -15.12649 -14.96763 -14.64708 -14.60333 -14.57824 -14.07455 -13.81853 -13.36335 -13.35930 -13.09685 -12.95090 -12.61911 -12.52735 -12.20152 -12.02658 -11.86410 -11.66968 -11.61200 -11.14616 -10.85239 -10.14541 -9.69185 -9.50489 -9.22603 -9.03913 -8.32359 -5.25635 0.87781 1.52917 1.60786 1.70639 1.86630 2.03899 2.45552 2.53196 2.75568 3.46087 3.70461 3.74902 3.94819 4.00221 4.07823 4.16563 4.27023 4.33669 4.41013 4.44445 4.53529 4.60121 4.75503 4.81526 4.85553 4.98255 5.01162 5.04797 5.10140 5.19881 5.25026 5.28845 5.36502 5.67462 5.71245 5.76746 5.98487 6.54016 6.58795 6.73284 7.14969 7.32899 8.05930 8.19065 9.18899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.005217 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.397287 B = 5366.244474 C = 6132.086269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.145 3.855 3 H 0.042 0.958 4 C -0.122 4.122 5 C 0.170 3.830 6 H 0.045 0.955 7 N -0.742 5.742 8 C -0.321 4.321 9 H 0.067 0.933 10 C -0.106 4.106 11 N -0.978 5.978 12 Si 1.126 2.874 13 H -0.280 1.280 14 H -0.277 1.277 15 H -0.297 1.297 16 C -0.137 4.137 17 C 0.097 3.903 18 N -0.594 5.594 19 C 0.580 3.420 20 O -0.581 6.581 21 C -0.267 4.267 22 C -0.211 4.211 23 C 0.007 3.993 24 N -0.535 5.535 25 H 0.438 0.562 26 C 0.077 3.923 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.358 0.642 33 H 0.240 0.760 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.039 0.961 38 H 0.149 0.851 39 H 0.207 0.793 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 -16.492 11.902 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.160 4.160 5 C 0.062 3.938 6 H 0.063 0.937 7 N -0.385 5.385 8 C -0.452 4.452 9 H 0.085 0.915 10 C -0.296 4.296 11 N -0.627 5.627 12 Si 0.952 3.048 13 H -0.207 1.207 14 H -0.203 1.203 15 H -0.224 1.224 16 C -0.178 4.178 17 C -0.025 4.025 18 N -0.325 5.325 19 C 0.372 3.628 20 O -0.464 6.464 21 C -0.277 4.277 22 C -0.234 4.234 23 C -0.122 4.122 24 N -0.131 5.131 25 H 0.278 0.722 26 C -0.061 4.061 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.057 0.943 38 H 0.166 0.834 39 H 0.223 0.777 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.504 -15.521 11.664 20.181 hybrid contribution -1.332 -0.544 0.193 1.451 sum -6.836 -16.065 11.857 21.105 Atomic orbital electron populations 1.22003 0.92125 1.02882 1.00318 1.21103 0.95602 0.94335 0.84773 0.93971 1.22118 0.95700 1.01299 0.96917 1.20379 0.91608 0.85865 0.95954 0.93734 1.42660 1.13293 1.06331 1.76219 1.20365 0.91581 0.96792 1.36507 0.91473 1.27074 1.09272 0.91763 1.01525 1.71001 1.10811 1.33422 1.47457 0.82636 0.70800 0.75296 0.76098 1.20658 1.20266 1.22382 1.22327 1.00748 0.98584 0.96123 1.22426 0.78752 1.00466 1.00857 1.47955 1.07958 1.56862 1.19702 1.17939 0.84910 0.77934 0.81999 1.90757 1.17224 1.59216 1.79246 1.20467 0.97230 1.08356 1.01606 1.22413 0.95990 1.05402 0.99613 1.22312 0.89898 0.98872 1.01111 1.41622 1.10250 1.35787 1.25455 0.72193 1.21904 0.97045 0.97224 0.89949 0.92659 0.92884 0.91831 0.91256 0.89894 0.80903 0.94960 0.90965 0.91949 0.84967 0.94288 0.83359 0.77674 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 7.60 71.98 0.55 -3.44 16 2 C 0.15 5.39 3.19 44.97 0.14 5.54 16 3 H 0.04 1.81 6.65 -2.39 -0.02 1.79 16 4 C -0.12 -4.28 5.07 30.66 0.16 -4.12 16 5 C 0.17 6.82 3.10 45.02 0.14 6.96 16 6 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 7 N -0.74 -37.05 4.31 -322.81 -1.39 -38.44 16 8 C -0.32 -17.77 9.93 84.03 0.83 -16.94 16 9 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 10 C -0.11 -6.11 5.50 84.86 0.47 -5.64 16 11 N -0.98 -61.93 13.70 21.65 0.30 -61.63 16 12 Si 1.13 52.02 29.92 68.60 2.05 54.07 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 16 C -0.14 -4.79 5.78 30.67 0.18 -4.62 16 17 C 0.10 3.36 5.33 86.36 0.46 3.82 16 18 N -0.59 -21.13 2.97 -799.11 -2.37 -23.51 16 19 C 0.58 20.21 7.52 86.62 0.65 20.86 16 20 O -0.58 -22.37 12.48 -4.11 -0.05 -22.42 16 21 C -0.27 -7.36 5.87 -19.04 -0.11 -7.47 16 22 C -0.21 -4.95 8.76 23.62 0.21 -4.74 16 23 C 0.01 0.10 11.89 83.12 0.99 1.09 16 24 N -0.54 -6.64 5.90 -194.56 -1.15 -7.79 16 25 H 0.44 1.77 8.96 -92.71 -0.83 0.94 16 26 C 0.08 1.50 11.79 83.92 0.99 2.49 16 27 H 0.05 2.07 6.70 -2.39 -0.02 2.05 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 2.19 6.78 -2.39 -0.02 2.18 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.36 19.12 4.90 -92.71 -0.45 18.67 16 33 H 0.24 15.34 6.78 -92.70 -0.63 14.71 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.13 3.90 3.12 -2.39 -0.01 3.89 16 37 H 0.04 1.63 7.74 -2.39 -0.02 1.61 16 38 H 0.15 3.70 6.02 -2.91 -0.02 3.68 16 39 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -74.42 312.28 2.96 -71.46 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.07 Total: 34.48 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.65 Total: -6.22 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -4.62 Total: -131.37 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -74.42 2.96 -71.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044609357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.812 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds