Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.91740 * 2 1 4 4 C 1.54910 * 111.00594 * 236.09289 * 2 1 3 5 5 N 1.47420 * 104.83256 * 204.92147 * 4 2 1 6 6 C 1.34781 * 125.64366 * 204.09749 * 5 4 2 7 7 O 1.21689 * 120.00411 * 355.37405 * 6 5 4 8 8 C 1.46683 * 119.99855 * 175.65472 * 6 5 4 9 9 C 1.37871 * 126.23213 * 5.45762 * 8 6 5 10 10 C 1.39833 * 107.08540 * 180.02562 * 9 8 6 11 11 C 1.35458 * 107.86462 * 359.97438 * 10 9 8 12 12 N 1.35533 * 108.86882 * 359.73519 * 11 10 9 13 13 C 1.46499 * 125.67548 * 180.26271 * 12 11 10 14 14 C 1.47019 * 108.70651 * 24.35320 * 5 4 2 15 15 C 1.54334 * 107.26632 * 358.58961 * 14 5 4 16 16 H 1.08996 * 110.51298 * 96.44680 * 15 14 5 17 17 N 1.46498 * 111.00245 * 219.60117 * 15 14 5 18 18 C 1.36937 * 120.00055 * 268.77805 * 17 15 14 19 19 H 1.08009 * 119.99872 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00305 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99808 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46987 * 90.00161 * 22 20 18 24 24 H 1.48498 * 109.46870 * 210.00128 * 22 20 18 25 25 H 1.48501 * 109.47468 * 330.00030 * 22 20 18 26 26 H 1.09007 * 109.47540 * 182.45242 * 1 2 3 27 27 H 1.08999 * 109.47083 * 302.44782 * 1 2 3 28 28 H 1.08994 * 109.47131 * 62.45139 * 1 2 3 29 29 H 1.08999 * 110.36704 * 86.07901 * 4 2 1 30 30 H 1.09004 * 110.36168 * 323.75738 * 4 2 1 31 31 H 1.07997 * 126.45811 * 359.97438 * 9 8 6 32 32 H 1.08002 * 126.06846 * 180.02562 * 10 9 8 33 33 H 1.07993 * 125.56540 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.47339 * 274.89280 * 13 12 11 35 35 H 1.08997 * 109.47290 * 34.90210 * 13 12 11 36 36 H 1.09011 * 109.46885 * 154.89634 * 13 12 11 37 37 H 1.09003 * 109.87784 * 118.13407 * 14 5 4 38 38 H 1.09000 * 109.88536 * 239.29462 * 14 5 4 39 39 H 0.97001 * 120.00003 * 88.77611 * 17 15 14 40 40 H 0.97003 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4270 -1.2432 -0.7731 6 6 4.4476 -1.5617 -1.5939 7 8 4.2763 -1.5818 -2.7985 8 6 5.7633 -1.8903 -1.0347 9 6 6.0719 -2.0158 0.3031 10 6 7.4310 -2.3346 0.3831 11 6 7.9181 -2.3974 -0.8793 12 7 6.9133 -2.1355 -1.7504 13 6 7.0323 -2.1126 -3.2103 14 6 3.4657 -1.2794 0.6961 15 6 2.0861 -0.8079 1.2024 16 1 1.4467 -1.6631 1.4211 17 7 2.2246 0.0487 2.3827 18 6 2.1952 -0.5025 3.6359 19 1 2.0703 -1.5688 3.7541 20 6 2.3270 0.3091 4.7544 21 7 2.4797 1.6083 4.6104 22 14 2.2876 -0.4430 6.4638 23 1 3.6665 -0.8102 6.8750 24 1 1.7302 0.5421 7.4252 25 1 1.4348 -1.6586 6.4504 26 1 -0.3634 -1.0268 0.0440 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4753 -0.9111 29 1 2.1560 -0.1722 -2.0836 30 1 1.4518 -1.6705 -1.4023 31 1 5.3922 -1.8906 1.1330 32 1 7.9926 -2.5019 1.2903 33 1 8.9391 -2.6242 -1.1481 34 1 7.3771 -1.1297 -3.5314 35 1 7.7481 -2.8706 -3.5284 36 1 6.0602 -2.3206 -3.6574 37 1 3.6600 -2.2964 1.0368 38 1 4.2424 -0.6085 1.0632 39 1 2.3372 1.0063 2.2766 40 1 2.5715 2.1755 5.3919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054396454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = 38.567988 kcal Electronic energy + Delta-G solvation = -21819.168201 eV Core-core repulsion = 18635.515044 eV Total energy + Delta-G solvation = -3183.653157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28102 -39.36113 -37.38609 -34.15873 -33.10983 -32.21754 -30.76892 -29.30071 -27.66971 -26.42495 -26.00843 -24.11072 -22.41829 -20.77407 -20.55106 -19.88367 -18.99818 -17.16422 -16.94848 -16.04887 -15.93560 -15.36088 -14.93484 -14.51829 -13.98220 -13.70602 -13.54790 -13.29917 -13.08552 -12.96315 -12.68896 -12.47726 -12.34602 -12.17352 -11.92327 -11.79726 -11.48320 -11.12722 -10.96020 -10.62227 -10.56156 -10.25570 -10.00480 -9.82795 -9.67825 -8.98439 -8.64041 -8.40010 -8.05631 -7.09296 -5.84963 -3.15833 1.62435 2.68344 2.87467 3.40006 3.44467 3.47008 3.47600 3.57887 4.51727 4.69088 4.82363 5.00601 5.09209 5.15474 5.18107 5.22933 5.49264 5.55323 5.57395 5.61697 5.69335 5.77005 5.82407 5.91671 5.99183 6.17734 6.24593 6.25765 6.31468 6.38952 6.50532 6.54183 6.61834 6.86044 6.93224 7.10140 7.29681 7.63432 7.77184 8.31760 8.36121 9.44482 9.97955 10.32982 11.36904 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.005260 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.982621 B = 5322.407909 C = 6660.964495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.601 3.399 7 O -0.568 6.568 8 C -0.050 4.050 9 C -0.144 4.144 10 C -0.209 4.209 11 C 0.007 3.993 12 N -0.416 5.416 13 C 0.064 3.936 14 C 0.065 3.935 15 C 0.176 3.824 16 H 0.069 0.931 17 N -0.710 5.710 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -6.695 -12.460 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.005 4.005 5 N -0.331 5.331 6 C 0.391 3.609 7 O -0.451 6.451 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.233 4.233 11 C -0.128 4.128 12 N -0.090 5.090 13 C -0.078 4.078 14 C -0.060 4.060 15 C 0.063 3.937 16 H 0.087 0.913 17 N -0.349 5.349 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.221 0.779 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.755 -6.790 -13.340 16.037 hybrid contribution 0.379 -0.053 1.023 1.092 sum 6.134 -6.843 -12.317 15.368 Atomic orbital electron populations 1.21592 0.93774 1.01847 1.01754 1.22670 0.96382 0.99833 0.94631 0.89800 1.22275 0.82210 0.98140 0.97846 1.48091 1.11578 1.65254 1.08136 1.16612 0.82279 0.76924 0.85047 1.90700 1.84125 1.55868 1.14371 1.19966 0.88132 1.16807 0.91367 1.22229 0.96990 1.02951 0.94828 1.20909 0.95507 1.10418 0.96495 1.21968 0.93541 1.07756 0.89501 1.43791 1.07401 1.51100 1.06669 1.22279 1.05761 1.02739 0.76971 1.23729 1.03414 1.01448 0.77437 1.21294 0.91637 0.93853 0.86911 0.91283 1.42350 1.86324 1.06179 1.00071 1.19251 1.42970 0.92576 0.83169 0.90920 1.24750 1.02238 0.95401 0.97940 1.69657 1.55965 1.02858 1.29130 0.86206 0.77689 0.77960 0.84404 1.21567 1.21776 1.20656 0.92778 0.91354 0.93235 0.90929 0.91483 0.81990 0.84054 0.81729 0.91034 0.90358 0.87451 0.91606 0.89972 0.77853 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.29 37.16 0.35 -1.49 16 2 C -0.12 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 4 C 0.12 1.78 6.36 -2.53 -0.02 1.76 16 5 N -0.60 -10.05 3.33 -172.05 -0.57 -10.62 16 6 C 0.60 10.63 7.81 -12.85 -0.10 10.53 16 7 O -0.57 -10.80 14.85 5.20 0.08 -10.72 16 8 C -0.05 -0.82 6.86 -81.98 -0.56 -1.39 16 9 C -0.14 -2.28 9.32 -39.12 -0.36 -2.65 16 10 C -0.21 -2.86 10.81 -39.98 -0.43 -3.29 16 11 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 12 N -0.42 -5.80 3.16 -120.23 -0.38 -6.18 16 13 C 0.06 0.70 10.77 59.85 0.64 1.34 16 14 C 0.07 1.13 4.75 -3.06 -0.01 1.12 16 15 C 0.18 3.22 3.07 -66.09 -0.20 3.02 16 16 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 17 N -0.71 -16.36 5.16 -51.64 -0.27 -16.63 16 18 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.93 -26.79 13.06 55.49 0.72 -26.07 16 22 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 31 H 0.16 2.62 4.42 -52.49 -0.23 2.39 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.38 5.97 -51.92 -0.31 1.07 16 37 H 0.07 1.10 7.10 -51.93 -0.37 0.73 16 38 H 0.08 1.55 6.62 -51.93 -0.34 1.21 16 39 H 0.39 9.63 7.76 -40.82 -0.32 9.31 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -30.62 326.48 -7.69 -38.31 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.74 Total: 10.67 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.43 Total: -0.09 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.49 Total: -59.49 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.62 -7.69 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054396454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.881 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds