Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.91740 * 2 1 4 4 C 1.54910 * 111.00594 * 236.09289 * 2 1 3 5 5 N 1.47420 * 104.83256 * 204.92147 * 4 2 1 6 6 C 1.34781 * 125.64366 * 204.09749 * 5 4 2 7 7 O 1.21689 * 120.00411 * 355.37405 * 6 5 4 8 8 C 1.46683 * 119.99855 * 175.65472 * 6 5 4 9 9 C 1.37871 * 126.23213 * 5.45762 * 8 6 5 10 10 C 1.39833 * 107.08540 * 180.02562 * 9 8 6 11 11 C 1.35458 * 107.86462 * 359.97438 * 10 9 8 12 12 N 1.35533 * 108.86882 * 359.73519 * 11 10 9 13 13 C 1.46499 * 125.67548 * 180.26271 * 12 11 10 14 14 C 1.47019 * 108.70651 * 24.35320 * 5 4 2 15 15 C 1.54334 * 107.26632 * 358.58961 * 14 5 4 16 16 H 1.08996 * 110.51298 * 96.44680 * 15 14 5 17 17 N 1.46498 * 111.00245 * 219.60117 * 15 14 5 18 18 C 1.36937 * 120.00055 * 268.77805 * 17 15 14 19 19 H 1.08009 * 119.99872 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00305 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99808 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99949 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46987 * 90.00161 * 22 20 18 24 24 H 1.48498 * 109.46870 * 210.00128 * 22 20 18 25 25 H 1.48501 * 109.47468 * 330.00030 * 22 20 18 26 26 H 1.09007 * 109.47540 * 182.45242 * 1 2 3 27 27 H 1.08999 * 109.47083 * 302.44782 * 1 2 3 28 28 H 1.08994 * 109.47131 * 62.45139 * 1 2 3 29 29 H 1.08999 * 110.36704 * 86.07901 * 4 2 1 30 30 H 1.09004 * 110.36168 * 323.75738 * 4 2 1 31 31 H 1.07997 * 126.45811 * 359.97438 * 9 8 6 32 32 H 1.08002 * 126.06846 * 180.02562 * 10 9 8 33 33 H 1.07993 * 125.56540 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.47339 * 274.89280 * 13 12 11 35 35 H 1.08997 * 109.47290 * 34.90210 * 13 12 11 36 36 H 1.09011 * 109.46885 * 154.89634 * 13 12 11 37 37 H 1.09003 * 109.87784 * 118.13407 * 14 5 4 38 38 H 1.09000 * 109.88536 * 239.29462 * 14 5 4 39 39 H 0.97001 * 120.00003 * 88.77611 * 17 15 14 40 40 H 0.97003 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4270 -1.2432 -0.7731 6 6 4.4476 -1.5617 -1.5939 7 8 4.2763 -1.5818 -2.7985 8 6 5.7633 -1.8903 -1.0347 9 6 6.0719 -2.0158 0.3031 10 6 7.4310 -2.3346 0.3831 11 6 7.9181 -2.3974 -0.8793 12 7 6.9133 -2.1355 -1.7504 13 6 7.0323 -2.1126 -3.2103 14 6 3.4657 -1.2794 0.6961 15 6 2.0861 -0.8079 1.2024 16 1 1.4467 -1.6631 1.4211 17 7 2.2246 0.0487 2.3827 18 6 2.1952 -0.5025 3.6359 19 1 2.0703 -1.5688 3.7541 20 6 2.3270 0.3091 4.7544 21 7 2.4797 1.6083 4.6104 22 14 2.2876 -0.4430 6.4638 23 1 3.6665 -0.8102 6.8750 24 1 1.7302 0.5421 7.4252 25 1 1.4348 -1.6586 6.4504 26 1 -0.3634 -1.0268 0.0440 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4753 -0.9111 29 1 2.1560 -0.1722 -2.0836 30 1 1.4518 -1.6705 -1.4023 31 1 5.3922 -1.8906 1.1330 32 1 7.9926 -2.5019 1.2903 33 1 8.9391 -2.6242 -1.1481 34 1 7.3771 -1.1297 -3.5314 35 1 7.7481 -2.8706 -3.5284 36 1 6.0602 -2.3206 -3.6574 37 1 3.6600 -2.2964 1.0368 38 1 4.2424 -0.6085 1.0632 39 1 2.3372 1.0063 2.2766 40 1 2.5715 2.1755 5.3919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054396454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = 19.733706 kcal Electronic energy + Delta-G solvation = -21819.984916 eV Core-core repulsion = 18635.515044 eV Total energy + Delta-G solvation = -3184.469873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.39865 -40.67995 -38.80005 -35.89257 -34.39225 -33.43482 -32.52383 -30.44145 -29.26808 -27.41663 -27.18787 -25.91836 -23.84557 -22.09609 -21.70357 -21.26199 -20.16486 -19.07761 -18.15187 -17.39067 -17.29119 -16.59554 -16.29818 -15.94626 -15.35268 -15.34085 -15.00753 -14.61699 -14.27916 -14.18998 -14.03471 -13.75349 -13.57586 -13.17883 -13.08115 -12.94235 -12.84080 -12.82759 -12.80844 -12.14445 -12.02536 -11.99664 -11.67059 -11.45326 -11.10358 -10.86011 -9.80956 -9.65634 -9.17563 -9.02872 -7.91188 -5.20946 0.43571 1.52692 1.53472 1.57181 1.61638 1.80789 2.28246 2.30830 2.60183 3.36751 3.41472 3.79495 3.82263 3.89518 3.98994 4.18100 4.23458 4.34461 4.37919 4.43635 4.50067 4.55452 4.62307 4.65516 4.74011 4.88185 4.89165 5.10369 5.11747 5.15277 5.22117 5.29523 5.34173 5.49679 5.58403 5.82407 5.97552 6.28783 6.33146 6.42257 7.02343 7.37196 8.07907 8.32460 9.31779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.005260 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.982621 B = 5322.407909 C = 6660.964495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.121 3.879 5 N -0.602 5.602 6 C 0.595 3.405 7 O -0.587 6.587 8 C -0.086 4.086 9 C -0.157 4.157 10 C -0.229 4.229 11 C 0.031 3.969 12 N -0.420 5.420 13 C 0.061 3.939 14 C 0.083 3.917 15 C 0.170 3.830 16 H 0.074 0.926 17 N -0.719 5.719 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.967 5.967 22 Si 0.967 3.033 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.268 1.268 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.212 0.788 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.375 0.625 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -8.286 -13.463 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.387 3.613 7 O -0.471 6.471 8 C -0.199 4.199 9 C -0.183 4.183 10 C -0.252 4.252 11 C -0.104 4.104 12 N -0.093 5.093 13 C -0.079 4.079 14 C -0.042 4.042 15 C 0.060 3.940 16 H 0.092 0.908 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.193 1.193 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.228 0.772 34 H 0.099 0.901 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.207 0.793 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.721 -8.425 -14.385 17.975 hybrid contribution 0.141 0.392 1.234 1.303 sum 6.863 -8.033 -13.150 16.869 Atomic orbital electron populations 1.21549 0.92068 1.02636 1.02100 1.22565 0.97689 0.98738 0.93453 0.91101 1.22349 0.81656 0.98703 0.97430 1.48121 1.12226 1.65295 1.07659 1.16876 0.82881 0.76627 0.84887 1.90680 1.84542 1.56937 1.14938 1.19908 0.88646 1.19335 0.91970 1.22261 0.98215 1.03391 0.94459 1.21216 0.94679 1.11109 0.98197 1.22689 0.94751 1.04443 0.88551 1.44096 1.06927 1.50330 1.07932 1.22437 1.05616 1.04621 0.75230 1.23344 1.01803 1.01100 0.77993 1.21475 0.92333 0.93807 0.86428 0.90815 1.42451 1.86492 1.06057 1.00777 1.19632 1.40437 0.92898 0.84220 0.90108 1.25472 1.03404 0.95798 1.01341 1.69808 1.58385 1.04120 1.29451 0.85235 0.77549 0.77307 0.80236 1.21580 1.22671 1.19277 0.91533 0.93319 0.90784 0.90491 0.89766 0.83333 0.82343 0.77179 0.90068 0.86578 0.89681 0.91118 0.91938 0.79252 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.29 71.98 0.67 -2.66 16 2 C -0.10 -3.22 3.27 -9.40 -0.03 -3.25 16 3 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 4 C 0.12 3.51 6.36 86.86 0.55 4.06 16 5 N -0.60 -20.11 3.33 -816.47 -2.72 -22.82 16 6 C 0.60 21.03 7.81 86.45 0.67 21.71 16 7 O -0.59 -22.19 14.85 -4.31 -0.06 -22.25 16 8 C -0.09 -2.80 6.86 40.35 0.28 -2.52 16 9 C -0.16 -4.95 9.32 22.57 0.21 -4.74 16 10 C -0.23 -5.84 10.81 22.01 0.24 -5.61 16 11 C 0.03 0.67 11.38 83.48 0.95 1.62 16 12 N -0.42 -10.86 3.16 -534.30 -1.69 -12.55 16 13 C 0.06 1.20 10.77 127.77 1.38 2.57 16 14 C 0.08 2.91 4.75 86.73 0.41 3.32 16 15 C 0.17 6.23 3.07 46.19 0.14 6.37 16 16 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16 17 N -0.72 -33.69 5.16 -317.30 -1.64 -35.33 16 18 C -0.24 -12.45 9.96 84.03 0.84 -11.61 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 21 N -0.97 -57.16 13.06 21.65 0.28 -56.88 16 22 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H 0.07 1.59 8.11 -2.38 -0.02 1.57 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 30 H 0.08 2.19 8.04 -2.38 -0.02 2.17 16 31 H 0.15 4.96 4.42 -2.91 -0.01 4.94 16 32 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 2.10 5.97 -2.38 -0.01 2.08 16 37 H 0.07 2.38 7.10 -2.39 -0.02 2.37 16 38 H 0.06 2.45 6.62 -2.39 -0.02 2.43 16 39 H 0.38 19.26 7.76 -92.71 -0.72 18.54 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.85 326.48 3.30 -63.55 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.33 Total: 33.85 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.77 Total: 6.04 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -5.76 Total: -127.59 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.85 3.30 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054396454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.280 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds