Wall clock time and date at job start Mon Mar 30 2020 02:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.91504 * 2 1 4 4 C 1.54905 * 111.00407 * 236.10153 * 2 1 3 5 5 N 1.47431 * 104.82849 * 204.91386 * 4 2 1 6 6 C 1.34782 * 125.64558 * 204.08518 * 5 4 2 7 7 O 1.21689 * 120.00268 * 5.16778 * 6 5 4 8 8 C 1.46678 * 119.99406 * 185.15977 * 6 5 4 9 9 C 1.37866 * 126.24044 * 354.36951 * 8 6 5 10 10 C 1.39837 * 107.08849 * 179.97438 * 9 8 6 11 11 C 1.35454 * 107.86390 * 359.97438 * 10 9 8 12 12 N 1.35533 * 108.86797 * 0.26469 * 11 10 9 13 13 C 1.46506 * 125.67317 * 179.69823 * 12 11 10 14 14 C 1.47017 * 108.70502 * 24.35597 * 5 4 2 15 15 C 1.54339 * 107.26583 * 358.58693 * 14 5 4 16 16 H 1.09003 * 110.84693 * 219.67847 * 15 14 5 17 17 N 1.46497 * 110.51722 * 96.44843 * 15 14 5 18 18 C 1.36939 * 119.99595 * 91.50575 * 17 15 14 19 19 H 1.08001 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99873 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47276 * 59.99873 * 22 20 18 24 24 H 1.48503 * 109.46806 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46999 * 299.99638 * 22 20 18 26 26 H 1.09001 * 109.46943 * 182.44844 * 1 2 3 27 27 H 1.08998 * 109.47075 * 302.44542 * 1 2 3 28 28 H 1.09003 * 109.47382 * 62.45000 * 1 2 3 29 29 H 1.08994 * 110.37313 * 86.07848 * 4 2 1 30 30 H 1.09003 * 110.46019 * 323.79811 * 4 2 1 31 31 H 1.08002 * 126.45519 * 359.97438 * 9 8 6 32 32 H 1.07996 * 126.06663 * 180.02562 * 10 9 8 33 33 H 1.07997 * 125.56110 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.46900 * 95.35980 * 13 12 11 35 35 H 1.08999 * 109.46967 * 215.35859 * 13 12 11 36 36 H 1.09002 * 109.46985 * 335.36075 * 13 12 11 37 37 H 1.09004 * 109.88733 * 118.12681 * 14 5 4 38 38 H 1.08994 * 109.88547 * 239.29601 * 14 5 4 39 39 H 0.96998 * 120.00282 * 271.49990 * 17 15 14 40 40 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4477 -1.5615 -1.5941 7 8 4.3318 -1.4106 -2.7960 8 6 5.6981 -2.0900 -1.0384 9 6 6.0088 -2.2102 0.2994 10 6 7.2931 -2.7582 0.3753 11 6 7.7345 -2.9593 -0.8894 12 7 6.7768 -2.5522 -1.7578 13 6 6.8728 -2.5987 -3.2189 14 6 3.4658 -1.2793 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 2.1922 -0.1699 2.0796 17 7 1.2269 -1.9575 1.4961 18 6 1.2058 -2.4919 2.7567 19 1 1.8230 -2.0663 3.5341 20 6 0.3912 -3.5808 3.0354 21 7 -0.3612 -4.0992 2.0881 22 14 0.3630 -4.3104 4.7548 23 1 -0.0773 -3.2755 5.7245 24 1 -0.5814 -5.4558 4.7911 25 1 1.7250 -4.7795 5.1158 26 1 -0.3633 -1.0267 0.0439 27 1 -0.3633 0.5513 0.8672 28 1 -0.3634 0.4753 -0.9111 29 1 2.1560 -0.1720 -2.0837 30 1 1.4525 -1.6703 -1.4043 31 1 5.3790 -1.9333 1.1319 32 1 7.8363 -2.9822 1.2815 33 1 8.6948 -3.3718 -1.1614 34 1 6.4057 -3.5130 -3.5848 35 1 6.3624 -1.7346 -3.6442 36 1 7.9218 -2.5830 -3.5148 37 1 3.6602 -2.2963 1.0367 38 1 4.2424 -0.6084 1.0631 39 1 0.6728 -2.3399 0.7978 40 1 -0.9307 -4.8599 2.2830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054396455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:28 Heat of formation + Delta-G solvation = 42.527580 kcal Electronic energy + Delta-G solvation = -22019.002566 eV Core-core repulsion = 18835.521110 eV Total energy + Delta-G solvation = -3183.481456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25656 -39.34901 -37.38401 -34.06156 -32.98967 -32.15537 -30.54733 -29.25019 -27.83771 -26.42291 -25.89800 -23.95111 -22.76319 -20.92364 -20.51111 -19.27681 -18.91836 -17.54050 -16.77429 -15.95958 -15.76180 -15.33614 -14.71990 -14.55448 -14.15875 -13.71560 -13.65036 -13.26076 -12.96496 -12.91629 -12.59133 -12.41388 -12.23304 -11.94321 -11.91630 -11.74340 -11.48119 -11.09895 -10.89363 -10.67992 -10.37106 -10.26476 -9.96029 -9.72597 -9.61029 -8.98373 -8.62912 -8.32608 -8.01763 -7.05626 -5.82788 -3.12759 1.66697 2.72110 2.88621 3.41539 3.46468 3.47255 3.52728 3.64491 4.54100 4.72727 4.81207 5.02010 5.15319 5.19825 5.23951 5.37043 5.49634 5.53001 5.57045 5.63681 5.69462 5.79809 5.94031 5.97602 6.18206 6.22484 6.27634 6.28231 6.34701 6.41971 6.54487 6.62161 6.76786 6.93323 6.98069 7.10613 7.31011 7.64695 7.86823 8.34863 8.44077 9.46911 10.01305 10.36072 11.39300 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005457 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.349155 B = 5129.531567 C = 6192.432621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.599 3.401 7 O -0.568 6.568 8 C -0.045 4.045 9 C -0.147 4.147 10 C -0.210 4.210 11 C 0.006 3.994 12 N -0.416 5.416 13 C 0.070 3.930 14 C 0.065 3.935 15 C 0.170 3.830 16 H 0.075 0.925 17 N -0.710 5.710 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.285 1.285 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 6.053 -6.371 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.390 3.610 7 O -0.451 6.451 8 C -0.158 4.158 9 C -0.173 4.173 10 C -0.235 4.235 11 C -0.129 4.129 12 N -0.089 5.089 13 C -0.071 4.071 14 C -0.061 4.061 15 C 0.058 3.942 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.212 1.212 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.384 6.034 -7.260 15.572 hybrid contribution -0.009 -0.820 0.744 1.107 sum 12.375 5.214 -6.517 14.927 Atomic orbital electron populations 1.21561 0.93306 1.03563 1.00529 1.22652 0.97015 0.98476 0.95410 0.90337 1.22278 0.82189 0.98460 0.97494 1.48005 1.11533 1.65018 1.07867 1.16583 0.81713 0.77682 0.85070 1.90723 1.82793 1.57014 1.14541 1.20007 0.91339 1.13141 0.91291 1.22132 0.97328 1.02985 0.94810 1.20872 0.97382 1.08795 0.96414 1.21956 0.95159 1.06209 0.89532 1.43804 1.12435 1.46015 1.06664 1.22188 1.03031 1.05099 0.76793 1.23675 1.01405 1.02459 0.78520 1.21262 0.88295 0.89889 0.94796 0.90738 1.42444 1.48900 1.32957 1.10838 1.19198 1.20772 1.10076 0.87744 0.90969 1.24739 0.99284 0.98753 0.97630 1.69645 1.29983 1.26230 1.31883 0.86280 0.77307 0.78549 0.84089 1.21205 1.21761 1.21176 0.90793 0.92291 0.93743 0.91133 0.91114 0.82277 0.84151 0.81753 0.90862 0.88223 0.90195 0.89647 0.92065 0.77768 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.98 37.16 0.33 -1.74 16 2 C -0.12 -1.81 3.51 -88.47 -0.31 -2.12 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.12 1.99 6.36 -2.53 -0.02 1.97 16 5 N -0.59 -10.52 3.33 -172.05 -0.57 -11.09 16 6 C 0.60 11.11 7.81 -12.85 -0.10 11.01 16 7 O -0.57 -11.40 15.00 5.20 0.08 -11.32 16 8 C -0.04 -0.75 6.86 -81.98 -0.56 -1.32 16 9 C -0.15 -2.28 9.32 -39.12 -0.36 -2.65 16 10 C -0.21 -2.80 10.81 -39.98 -0.43 -3.23 16 11 C 0.01 0.08 11.37 -16.91 -0.19 -0.12 16 12 N -0.42 -5.92 3.16 -120.23 -0.38 -6.30 16 13 C 0.07 0.80 10.49 59.85 0.63 1.43 16 14 C 0.07 1.12 4.72 -3.06 -0.01 1.10 16 15 C 0.17 3.09 3.40 -66.09 -0.22 2.87 16 16 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 17 N -0.71 -16.34 4.45 -51.64 -0.23 -16.56 16 18 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 22 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.07 1.37 6.27 -51.93 -0.33 1.05 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.13 7.99 -51.93 -0.41 0.72 16 30 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.16 2.41 4.42 -52.49 -0.23 2.18 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.29 6.53 -51.93 -0.34 0.95 16 36 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.09 1.66 6.79 -51.93 -0.35 1.30 16 38 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 39 H 0.39 9.61 6.25 -40.82 -0.25 9.36 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -31.16 323.24 -7.66 -38.82 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.62 Total: 10.97 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.50 Total: 0.37 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.46 Total: -60.27 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.16 -7.66 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054396455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.344 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds