Wall clock time and date at job start Mon Mar 30 2020 02:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.91504 * 2 1 4 4 C 1.54905 * 111.00407 * 236.10153 * 2 1 3 5 5 N 1.47431 * 104.82849 * 204.91386 * 4 2 1 6 6 C 1.34782 * 125.64558 * 204.08518 * 5 4 2 7 7 O 1.21689 * 120.00268 * 5.16778 * 6 5 4 8 8 C 1.46678 * 119.99406 * 185.15977 * 6 5 4 9 9 C 1.37866 * 126.24044 * 354.36951 * 8 6 5 10 10 C 1.39837 * 107.08849 * 179.97438 * 9 8 6 11 11 C 1.35454 * 107.86390 * 359.97438 * 10 9 8 12 12 N 1.35533 * 108.86797 * 0.26469 * 11 10 9 13 13 C 1.46506 * 125.67317 * 179.69823 * 12 11 10 14 14 C 1.47017 * 108.70502 * 24.35597 * 5 4 2 15 15 C 1.54339 * 107.26583 * 358.58693 * 14 5 4 16 16 H 1.09003 * 110.84693 * 219.67847 * 15 14 5 17 17 N 1.46497 * 110.51722 * 96.44843 * 15 14 5 18 18 C 1.36939 * 119.99595 * 91.50575 * 17 15 14 19 19 H 1.08001 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99873 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47276 * 59.99873 * 22 20 18 24 24 H 1.48503 * 109.46806 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46999 * 299.99638 * 22 20 18 26 26 H 1.09001 * 109.46943 * 182.44844 * 1 2 3 27 27 H 1.08998 * 109.47075 * 302.44542 * 1 2 3 28 28 H 1.09003 * 109.47382 * 62.45000 * 1 2 3 29 29 H 1.08994 * 110.37313 * 86.07848 * 4 2 1 30 30 H 1.09003 * 110.46019 * 323.79811 * 4 2 1 31 31 H 1.08002 * 126.45519 * 359.97438 * 9 8 6 32 32 H 1.07996 * 126.06663 * 180.02562 * 10 9 8 33 33 H 1.07997 * 125.56110 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.46900 * 95.35980 * 13 12 11 35 35 H 1.08999 * 109.46967 * 215.35859 * 13 12 11 36 36 H 1.09002 * 109.46985 * 335.36075 * 13 12 11 37 37 H 1.09004 * 109.88733 * 118.12681 * 14 5 4 38 38 H 1.08994 * 109.88547 * 239.29601 * 14 5 4 39 39 H 0.96998 * 120.00282 * 271.49990 * 17 15 14 40 40 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2003 5 7 3.4272 -1.2429 -0.7733 6 6 4.4477 -1.5615 -1.5941 7 8 4.3318 -1.4106 -2.7960 8 6 5.6981 -2.0900 -1.0384 9 6 6.0088 -2.2102 0.2994 10 6 7.2931 -2.7582 0.3753 11 6 7.7345 -2.9593 -0.8894 12 7 6.7768 -2.5522 -1.7578 13 6 6.8728 -2.5987 -3.2189 14 6 3.4658 -1.2793 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 2.1922 -0.1699 2.0796 17 7 1.2269 -1.9575 1.4961 18 6 1.2058 -2.4919 2.7567 19 1 1.8230 -2.0663 3.5341 20 6 0.3912 -3.5808 3.0354 21 7 -0.3612 -4.0992 2.0881 22 14 0.3630 -4.3104 4.7548 23 1 -0.0773 -3.2755 5.7245 24 1 -0.5814 -5.4558 4.7911 25 1 1.7250 -4.7795 5.1158 26 1 -0.3633 -1.0267 0.0439 27 1 -0.3633 0.5513 0.8672 28 1 -0.3634 0.4753 -0.9111 29 1 2.1560 -0.1720 -2.0837 30 1 1.4525 -1.6703 -1.4043 31 1 5.3790 -1.9333 1.1319 32 1 7.8363 -2.9822 1.2815 33 1 8.6948 -3.3718 -1.1614 34 1 6.4057 -3.5130 -3.5848 35 1 6.3624 -1.7346 -3.6442 36 1 7.9218 -2.5830 -3.5148 37 1 3.6602 -2.2963 1.0367 38 1 4.2424 -0.6084 1.0631 39 1 0.6728 -2.3399 0.7978 40 1 -0.9307 -4.8599 2.2830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054396455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:28 Heat of formation + Delta-G solvation = 23.207099 kcal Electronic energy + Delta-G solvation = -22019.840365 eV Core-core repulsion = 18835.521110 eV Total energy + Delta-G solvation = -3184.319255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37656 -40.70520 -38.83682 -35.76079 -34.33268 -33.42950 -32.27977 -30.41559 -29.43959 -27.42790 -27.17159 -25.79834 -24.20731 -22.21900 -21.59368 -20.71402 -20.11473 -19.37394 -18.05581 -17.36607 -17.09669 -16.63323 -16.25507 -15.89321 -15.68228 -15.30337 -14.95213 -14.66263 -14.19180 -14.14905 -14.01437 -13.64637 -13.36724 -13.19915 -13.08210 -12.99258 -12.85472 -12.82268 -12.71983 -12.27764 -12.15280 -11.84513 -11.44277 -11.39869 -11.10651 -10.86573 -9.78644 -9.64104 -9.15543 -8.97848 -7.89253 -5.17353 0.46507 1.52440 1.54221 1.59568 1.59888 1.83871 2.31805 2.34708 2.60704 3.41871 3.42761 3.81535 3.89882 3.94578 3.98677 4.08782 4.19630 4.35728 4.41307 4.48917 4.54245 4.61724 4.63500 4.71170 4.72755 4.87455 4.96181 5.01770 5.14092 5.21315 5.24803 5.29794 5.34888 5.57754 5.62873 5.85108 5.98929 6.31708 6.35209 6.48171 7.05282 7.39524 8.13157 8.36348 9.33994 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.005457 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.349155 B = 5129.531567 C = 6192.432621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.110 0.890 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.591 3.409 7 O -0.594 6.594 8 C -0.088 4.088 9 C -0.153 4.153 10 C -0.226 4.226 11 C 0.029 3.971 12 N -0.422 5.422 13 C 0.068 3.932 14 C 0.079 3.921 15 C 0.161 3.839 16 H 0.088 0.912 17 N -0.721 5.721 18 C -0.235 4.235 19 H 0.084 0.916 20 C -0.072 4.072 21 N -0.971 5.971 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.303 1.303 25 H -0.279 1.279 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.211 0.789 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.374 0.626 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.912 7.002 -5.851 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.119 4.119 3 H 0.128 0.872 4 C -0.005 4.005 5 N -0.328 5.328 6 C 0.383 3.617 7 O -0.478 6.478 8 C -0.200 4.200 9 C -0.179 4.179 10 C -0.249 4.249 11 C -0.107 4.107 12 N -0.095 5.095 13 C -0.072 4.072 14 C -0.046 4.046 15 C 0.051 3.949 16 H 0.106 0.894 17 N -0.360 5.360 18 C -0.367 4.367 19 H 0.102 0.898 20 C -0.265 4.265 21 N -0.621 5.621 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.230 1.230 25 H -0.205 1.205 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.208 0.792 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.911 7.035 -6.728 17.807 hybrid contribution -0.662 -1.074 0.531 1.369 sum 14.249 5.960 -6.197 16.642 Atomic orbital electron populations 1.21481 0.93301 1.01625 1.01922 1.22611 0.96869 0.99273 0.93180 0.87234 1.22273 0.81769 0.97909 0.98513 1.48087 1.11660 1.65069 1.08002 1.16973 0.82482 0.77344 0.84885 1.90692 1.83463 1.58205 1.15451 1.19922 0.91866 1.16009 0.92215 1.22274 0.98455 1.02908 0.94298 1.21232 0.96676 1.08944 0.98081 1.22731 0.95774 1.03418 0.88768 1.44100 1.12044 1.45563 1.07809 1.22321 1.05513 1.04026 0.75378 1.23434 1.01247 1.01560 0.78334 1.21533 0.88104 0.88844 0.96459 0.89373 1.42591 1.49561 1.34194 1.09692 1.19640 1.19074 1.09087 0.88901 0.89795 1.25473 1.00099 1.00038 1.00852 1.69813 1.31620 1.26963 1.33737 0.85299 0.77033 0.77472 0.80470 1.20225 1.23020 1.20546 0.94213 0.92074 0.91236 0.90228 0.93418 0.82674 0.81857 0.77243 0.91003 0.90333 0.85952 0.92144 0.89406 0.79217 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.98 71.98 0.65 -3.21 16 2 C -0.10 -2.99 3.51 -9.40 -0.03 -3.02 16 3 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 4 C 0.12 3.96 6.36 86.85 0.55 4.52 16 5 N -0.60 -21.23 3.33 -816.47 -2.72 -23.95 16 6 C 0.59 22.12 7.81 86.45 0.67 22.80 16 7 O -0.59 -24.25 15.00 -4.31 -0.06 -24.31 16 8 C -0.09 -2.90 6.86 40.35 0.28 -2.62 16 9 C -0.15 -4.59 9.32 22.57 0.21 -4.38 16 10 C -0.23 -5.42 10.81 22.01 0.24 -5.18 16 11 C 0.03 0.60 11.37 83.48 0.95 1.55 16 12 N -0.42 -11.21 3.16 -534.30 -1.69 -12.90 16 13 C 0.07 1.43 10.49 127.77 1.34 2.77 16 14 C 0.08 2.68 4.72 86.74 0.41 3.09 16 15 C 0.16 5.71 3.40 46.19 0.16 5.87 16 16 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 17 N -0.72 -33.51 4.45 -317.30 -1.41 -34.92 16 18 C -0.24 -12.15 9.96 84.03 0.84 -11.31 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 21 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 22 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.04 1.50 6.27 -2.39 -0.01 1.49 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.53 7.99 -2.39 -0.02 2.51 16 30 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 31 H 0.16 4.60 4.42 -2.91 -0.01 4.59 16 32 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.01 6.53 -2.39 -0.02 1.99 16 36 H 0.12 1.47 8.12 -2.39 -0.02 1.45 16 37 H 0.06 2.37 6.79 -2.39 -0.02 2.35 16 38 H 0.09 2.50 6.96 -2.39 -0.02 2.49 16 39 H 0.37 19.28 6.25 -92.71 -0.58 18.70 16 40 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -69.32 323.24 3.63 -65.69 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.47 Total: 34.17 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.73 Total: 7.33 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -5.53 Total: -129.71 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.32 3.63 -65.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054396455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.899 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds