Wall clock time and date at job start Mon Mar 30 2020 02:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63824 * 2 1 4 4 C 1.54318 * 110.71986 * 123.14367 * 2 1 3 5 5 N 1.47017 * 107.27221 * 140.73295 * 4 2 1 6 6 C 1.34777 * 125.65220 * 181.02484 * 5 4 2 7 7 O 1.21696 * 119.99565 * 5.86755 * 6 5 4 8 8 C 1.46676 * 120.00360 * 185.59465 * 6 5 4 9 9 C 1.37871 * 126.23311 * 7.14053 * 8 6 5 10 10 C 1.39835 * 107.08726 * 179.88335 * 9 8 6 11 11 C 1.35444 * 107.86297 * 0.38218 * 10 9 8 12 12 N 1.35535 * 108.87615 * 359.76440 * 11 10 9 13 13 C 1.46492 * 125.68263 * 179.97438 * 12 11 10 14 14 C 1.47426 * 108.70236 * 1.28458 * 5 4 2 15 15 C 1.55126 * 104.72186 * 335.55779 * 14 5 4 16 16 H 1.08998 * 110.94179 * 155.29109 * 15 14 5 17 17 N 1.46504 * 111.19029 * 279.18519 * 15 14 5 18 18 C 1.36934 * 120.00378 * 267.19146 * 17 15 14 19 19 H 1.08008 * 119.99891 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00269 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00013 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47025 * 60.00019 * 22 20 18 24 24 H 1.48503 * 109.46850 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47218 * 300.00406 * 22 20 18 26 26 H 1.09000 * 109.47180 * 298.30971 * 1 2 3 27 27 H 1.09008 * 109.47232 * 58.30732 * 1 2 3 28 28 H 1.09002 * 109.47303 * 178.30969 * 1 2 3 29 29 H 1.09004 * 109.88428 * 21.31477 * 4 2 1 30 30 H 1.08999 * 110.01320 * 260.22163 * 4 2 1 31 31 H 1.07997 * 126.45578 * 0.02562 * 9 8 6 32 32 H 1.08005 * 126.06647 * 180.14211 * 10 9 8 33 33 H 1.08008 * 125.56393 * 179.74093 * 11 10 9 34 34 H 1.09003 * 109.46932 * 264.84662 * 13 12 11 35 35 H 1.09001 * 109.47164 * 24.84492 * 13 12 11 36 36 H 1.08997 * 109.47475 * 144.85298 * 13 12 11 37 37 H 1.09004 * 110.36603 * 94.48637 * 14 5 4 38 38 H 1.08998 * 110.36988 * 216.80465 * 14 5 4 39 39 H 0.97000 * 119.99952 * 87.18838 * 17 15 14 40 40 H 0.97005 * 119.99474 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2470 -1.5461 0.7426 6 6 3.9957 -2.3768 1.4949 7 8 3.6596 -2.6332 2.6361 8 6 5.2121 -2.9764 0.9364 9 6 5.7826 -2.6770 -0.2826 10 6 6.9231 -3.4760 -0.4098 11 6 7.0225 -4.2388 0.7050 12 7 5.9889 -3.9449 1.5310 13 6 5.7395 -4.5564 2.8386 14 6 3.4706 -1.2413 -0.6824 15 6 2.0828 -0.7948 -1.2124 16 1 2.1879 -0.1516 -2.0861 17 7 1.2342 -1.9503 -1.5138 18 6 1.2124 -2.4723 -2.7796 19 1 1.8206 -2.0319 -3.5559 20 6 0.4088 -3.5676 -3.0650 21 7 -0.3320 -4.1046 -2.1189 22 14 0.3787 -4.2792 -4.7919 23 1 1.7437 -4.7287 -5.1660 24 1 -0.5528 -5.4351 -4.8348 25 1 -0.0793 -3.2393 -5.7480 26 1 -0.3633 0.4874 0.9048 27 1 -0.3634 0.5399 -0.8745 28 1 -0.3634 -1.0272 -0.0303 29 1 1.3140 -1.4754 1.5781 30 1 2.3707 -0.1012 2.0010 31 1 5.4185 -1.9590 -1.0024 32 1 7.6020 -3.4861 -1.2498 33 1 7.7986 -4.9633 0.9033 34 1 5.0378 -5.3828 2.7253 35 1 6.6773 -4.9298 3.2499 36 1 5.3177 -3.8117 3.5135 37 1 4.1970 -0.4355 -0.7885 38 1 3.8101 -2.1313 -1.2120 39 1 0.6877 -2.3457 -0.8168 40 1 -0.8938 -4.8698 -2.3185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054396457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:34 Heat of formation + Delta-G solvation = 21.981017 kcal Electronic energy + Delta-G solvation = -22206.972336 eV Core-core repulsion = 19022.599914 eV Total energy + Delta-G solvation = -3184.372422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.35856 -40.67253 -38.79476 -35.71674 -34.33646 -33.41533 -32.28591 -30.40098 -29.44889 -27.43072 -27.16196 -25.81711 -24.17565 -22.18109 -21.59647 -20.64923 -20.13200 -19.34685 -18.04105 -17.42276 -17.15992 -16.60841 -16.19529 -15.99290 -15.62078 -15.24188 -14.86815 -14.62242 -14.21996 -14.13540 -13.97027 -13.58555 -13.47565 -13.23265 -13.15053 -12.95799 -12.90095 -12.77470 -12.67879 -12.24074 -12.18073 -11.82608 -11.47787 -11.35826 -11.08274 -10.88244 -9.77781 -9.63132 -9.15702 -8.91424 -7.90421 -5.18150 0.49381 1.49565 1.52002 1.57398 1.62221 1.85830 2.33354 2.39508 2.59026 3.40398 3.45999 3.84048 3.90714 3.96800 3.97784 4.11665 4.19740 4.33438 4.41499 4.50888 4.55026 4.63324 4.67834 4.70350 4.76020 4.87181 4.96965 5.01364 5.15184 5.22354 5.24496 5.28877 5.42372 5.55840 5.62414 5.87301 6.00516 6.30286 6.36050 6.51352 7.09545 7.37445 8.13244 8.35265 9.33012 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.006287 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.881469 B = 4452.263364 C = 5494.503278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.121 0.879 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.588 3.412 7 O -0.599 6.599 8 C -0.088 4.088 9 C -0.148 4.148 10 C -0.225 4.225 11 C 0.025 3.975 12 N -0.424 5.424 13 C 0.068 3.932 14 C 0.069 3.931 15 C 0.158 3.842 16 H 0.093 0.907 17 N -0.719 5.719 18 C -0.232 4.232 19 H 0.086 0.914 20 C -0.077 4.077 21 N -0.973 5.973 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.304 1.304 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.209 0.791 34 H 0.067 0.933 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.371 0.629 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.400 6.151 5.326 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.139 0.861 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.380 3.620 7 O -0.484 6.484 8 C -0.200 4.200 9 C -0.175 4.175 10 C -0.248 4.248 11 C -0.111 4.111 12 N -0.097 5.097 13 C -0.073 4.073 14 C -0.055 4.055 15 C 0.047 3.953 16 H 0.111 0.889 17 N -0.358 5.358 18 C -0.364 4.364 19 H 0.104 0.896 20 C -0.269 4.269 21 N -0.624 5.624 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.231 1.231 25 H -0.200 1.200 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.226 0.774 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.204 0.796 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.171 5.809 6.124 16.494 hybrid contribution -0.757 -1.114 -0.437 1.415 sum 13.414 4.695 5.687 15.308 Atomic orbital electron populations 1.21532 0.93865 1.01131 1.01905 1.22530 0.96652 0.99794 0.92862 0.86093 1.22033 0.86603 0.93952 0.97842 1.48002 1.28700 1.43486 1.12259 1.17017 0.82488 0.78230 0.84254 1.90686 1.73754 1.63871 1.20115 1.19966 0.98774 1.03064 0.98203 1.22209 0.97290 1.02957 0.95010 1.21238 1.01036 1.01736 1.00791 1.22733 0.93558 1.03388 0.91408 1.44091 1.20104 1.28931 1.16580 1.22298 1.04468 0.98988 0.81524 1.23783 1.00889 1.01299 0.79576 1.21764 0.88471 0.88748 0.96269 0.88912 1.42526 1.50327 1.33872 1.09068 1.19664 1.19451 1.08696 0.88599 0.89618 1.25516 1.00386 1.00032 1.00951 1.69839 1.32554 1.26220 1.33759 0.85281 0.77033 0.77437 0.80439 1.20557 1.23136 1.20000 0.91269 0.92019 0.94987 0.94292 0.90435 0.82194 0.81593 0.77407 0.91472 0.85831 0.90324 0.88438 0.90998 0.79604 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.81 71.98 0.63 -3.30 16 2 C -0.10 -2.88 3.40 -9.61 -0.03 -2.91 16 3 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.12 3.95 6.46 86.73 0.56 4.51 16 5 N -0.59 -21.63 3.32 -816.07 -2.71 -24.34 16 6 C 0.59 23.48 7.80 86.45 0.67 24.15 16 7 O -0.60 -26.55 15.10 -4.34 -0.07 -26.61 16 8 C -0.09 -3.08 6.82 40.35 0.28 -2.81 16 9 C -0.15 -4.55 9.14 22.57 0.21 -4.34 16 10 C -0.22 -5.60 10.81 22.01 0.24 -5.36 16 11 C 0.02 0.56 11.37 83.48 0.95 1.51 16 12 N -0.42 -12.35 3.16 -534.33 -1.69 -14.04 16 13 C 0.07 1.64 10.53 127.77 1.34 2.98 16 14 C 0.07 2.27 4.81 86.93 0.42 2.68 16 15 C 0.16 5.54 3.47 46.46 0.16 5.70 16 16 H 0.09 2.96 8.09 -2.39 -0.02 2.95 16 17 N -0.72 -34.16 4.58 -316.02 -1.45 -35.60 16 18 C -0.23 -12.20 9.96 84.03 0.84 -11.36 16 19 H 0.09 4.18 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 21 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 22 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.86 8.14 -2.38 -0.02 1.85 16 28 H 0.03 1.25 6.36 -2.39 -0.02 1.24 16 29 H 0.04 1.52 7.82 -2.38 -0.02 1.50 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.16 4.55 4.78 -2.91 -0.01 4.54 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.21 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.12 1.80 8.12 -2.39 -0.02 1.78 16 36 H 0.08 2.25 6.48 -2.39 -0.02 2.24 16 37 H 0.10 2.46 7.73 -2.39 -0.02 2.44 16 38 H 0.07 2.68 5.90 -2.39 -0.01 2.67 16 39 H 0.37 19.94 6.34 -92.71 -0.59 19.35 16 40 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -73.27 323.58 3.59 -69.68 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.46 Total: 35.38 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.73 Total: 7.58 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.57 Total: -133.67 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.07 Total: -26.61 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.27 3.59 -69.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054396457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.658 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds