Wall clock time and date at job start Mon Mar 30 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.88544 * 2 1 4 4 C 1.54911 * 111.00441 * 236.11086 * 2 1 3 5 5 N 1.47423 * 104.82898 * 204.88251 * 4 2 1 6 6 C 1.34777 * 125.64498 * 204.09259 * 5 4 2 7 7 O 1.21630 * 120.00003 * 0.02562 * 6 5 4 8 8 C 1.47262 * 120.00069 * 180.02562 * 6 5 4 9 9 C 1.46693 * 126.94185 * 0.04102 * 8 6 5 10 10 C 1.34486 * 106.33068 * 179.72632 * 9 8 6 11 11 N 1.36447 * 108.85859 * 0.38566 * 10 9 8 12 12 C 1.46499 * 124.85090 * 179.85648 * 11 10 9 13 13 C 1.34665 * 110.29733 * 359.59855 * 11 10 9 14 14 C 1.47019 * 108.70853 * 24.35848 * 5 4 2 15 15 C 1.54334 * 107.26160 * 358.58615 * 14 5 4 16 16 H 1.09001 * 111.00055 * 219.60135 * 15 14 5 17 17 N 1.46500 * 110.51898 * 96.45078 * 15 14 5 18 18 C 1.36935 * 120.00110 * 91.49661 * 17 15 14 19 19 H 1.07997 * 120.00104 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00248 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99730 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00176 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47445 * 60.00305 * 22 20 18 24 24 H 1.48503 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47206 * 300.00057 * 22 20 18 26 26 H 1.09003 * 109.47432 * 182.42437 * 1 2 3 27 27 H 1.08999 * 109.47456 * 302.43695 * 1 2 3 28 28 H 1.09006 * 109.46703 * 62.43141 * 1 2 3 29 29 H 1.09001 * 110.36060 * 86.04705 * 4 2 1 30 30 H 1.08997 * 110.46067 * 323.77002 * 4 2 1 31 31 H 1.08004 * 126.82843 * 359.96735 * 9 8 6 32 32 H 1.08000 * 125.56935 * 180.23330 * 10 9 8 33 33 H 1.09002 * 109.47391 * 269.70126 * 12 11 10 34 34 H 1.09001 * 109.46813 * 149.70182 * 12 11 10 35 35 H 1.09004 * 109.47041 * 29.70309 * 12 11 10 36 36 H 1.07992 * 125.79675 * 180.20238 * 13 11 10 37 37 H 1.08998 * 109.88315 * 118.12263 * 14 5 4 38 38 H 1.08994 * 109.88728 * 239.29658 * 14 5 4 39 39 H 0.96997 * 120.00002 * 271.50217 * 17 15 14 40 40 H 0.97003 * 119.99973 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8064 -1.2005 5 7 3.4275 -1.2422 -0.7739 6 6 4.4479 -1.5602 -1.5949 7 8 4.3003 -1.4983 -2.8006 8 6 5.7415 -1.9826 -1.0322 9 6 6.0854 -2.1109 0.3881 10 6 7.3632 -2.5281 0.4316 11 7 7.8290 -2.6563 -0.8445 12 6 9.1826 -3.0876 -1.2023 13 6 6.8649 -2.3351 -1.7282 14 6 3.4666 -1.2786 0.6954 15 6 2.0869 -0.8078 1.2020 16 1 2.1899 -0.1705 2.0803 17 7 1.2281 -1.9577 1.4962 18 6 1.2077 -2.4923 2.7567 19 1 1.8244 -2.0660 3.5341 20 6 0.3944 -3.5822 3.0353 21 7 -0.3567 -4.1020 2.0877 22 14 0.3661 -4.3110 4.7550 23 1 -0.0764 -3.2763 5.7240 24 1 -0.5759 -5.4584 4.7908 25 1 1.7284 -4.7780 5.1173 26 1 -0.3634 -1.0267 0.0435 27 1 -0.3634 0.5512 0.8673 28 1 -0.3633 0.4757 -0.9111 29 1 2.1554 -0.1716 -2.0838 30 1 1.4528 -1.6704 -1.4043 31 1 5.4395 -1.9138 1.2310 32 1 7.9290 -2.7267 1.3298 33 1 9.8331 -2.2164 -1.2790 34 1 9.1570 -3.6074 -2.1600 35 1 9.5646 -3.7599 -0.4340 36 1 6.9625 -2.3524 -2.8035 37 1 3.6614 -2.2955 1.0359 38 1 4.2430 -0.6073 1.0623 39 1 0.6741 -2.3404 0.7981 40 1 -0.9247 -4.8639 2.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054566019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:43 Heat of formation + Delta-G solvation = 20.046024 kcal Electronic energy + Delta-G solvation = -21749.320056 eV Core-core repulsion = 18564.863726 eV Total energy + Delta-G solvation = -3184.456330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17046 -40.72126 -38.77930 -35.65680 -34.20439 -33.29604 -32.17244 -30.17050 -29.28715 -28.31487 -26.54803 -25.77531 -24.10635 -22.21776 -21.26276 -20.65582 -20.01956 -19.36192 -18.11683 -17.21961 -17.06728 -16.45158 -16.20245 -15.94752 -15.67213 -15.27572 -14.89533 -14.59261 -14.37330 -14.03438 -13.93449 -13.44226 -13.33999 -13.20503 -13.05175 -13.00397 -12.83796 -12.76102 -12.68150 -12.26960 -12.14749 -11.85506 -11.42115 -11.36772 -11.02384 -10.83257 -9.70234 -9.48025 -9.21325 -8.95977 -7.87950 -5.16181 0.77129 1.52072 1.53846 1.54287 1.59981 1.92436 2.30415 2.57448 2.61742 3.43799 3.55672 3.93488 3.97546 4.00868 4.04819 4.08291 4.12746 4.30294 4.45730 4.49161 4.60413 4.65043 4.68933 4.75332 4.75592 4.91497 4.96525 5.03516 5.05423 5.11798 5.24671 5.34019 5.44687 5.58028 5.64079 5.77308 6.09681 6.32749 6.38480 6.67263 7.27277 7.40157 8.14423 8.38060 9.35437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.005275 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.931038 B = 5306.628438 C = 6561.077333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.108 0.892 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.592 3.408 7 O -0.606 6.606 8 C -0.266 4.266 9 C -0.197 4.197 10 C -0.010 4.010 11 N -0.441 5.441 12 C 0.062 3.938 13 C 0.071 3.929 14 C 0.089 3.911 15 C 0.160 3.840 16 H 0.086 0.914 17 N -0.722 5.722 18 C -0.235 4.235 19 H 0.084 0.916 20 C -0.074 4.074 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.303 1.303 25 H -0.279 1.279 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.153 0.847 32 H 0.202 0.798 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.183 0.817 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.374 0.626 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.288 6.598 -3.468 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 H 0.126 0.874 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.385 3.615 7 O -0.491 6.491 8 C -0.276 4.276 9 C -0.220 4.220 10 C -0.136 4.136 11 N -0.116 5.116 12 C -0.078 4.078 13 C -0.067 4.067 14 C -0.037 4.037 15 C 0.050 3.950 16 H 0.104 0.896 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.102 0.898 20 C -0.266 4.266 21 N -0.622 5.622 22 Si 0.799 3.201 23 H -0.202 1.202 24 H -0.230 1.230 25 H -0.205 1.205 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.170 0.830 32 H 0.218 0.782 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.200 0.800 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.207 0.793 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.657 6.467 -3.969 20.141 hybrid contribution -0.768 -1.013 0.442 1.346 sum 17.890 5.453 -3.526 19.032 Atomic orbital electron populations 1.21477 0.93391 1.01559 1.01843 1.22600 0.96807 0.99213 0.93360 0.87404 1.22215 0.82652 0.97626 0.98277 1.48257 1.11733 1.65681 1.07949 1.17582 0.83370 0.75880 0.84678 1.90668 1.84576 1.58102 1.15779 1.20352 0.94182 1.17863 0.95212 1.22756 0.96933 1.07375 0.94922 1.22283 0.95697 1.07517 0.88145 1.43936 1.12189 1.49937 1.05526 1.22467 0.78563 1.02402 1.04357 1.21869 0.87453 1.01028 0.96323 1.23265 1.00686 1.01123 0.78601 1.21542 0.88360 0.88806 0.96309 0.89581 1.42600 1.49621 1.34202 1.09702 1.19645 1.19115 1.09050 0.88864 0.89808 1.25492 1.00124 1.00030 1.00935 1.69827 1.31772 1.26843 1.33767 0.85273 0.77042 0.77440 0.80357 1.20217 1.23015 1.20498 0.94273 0.92078 0.91319 0.90695 0.93916 0.82982 0.78152 0.89022 0.88510 0.87549 0.79995 0.92638 0.89745 0.79306 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.98 71.98 0.65 -3.39 16 2 C -0.10 -3.20 3.51 -9.40 -0.03 -3.23 16 3 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.11 4.17 6.33 86.86 0.55 4.72 16 5 N -0.61 -22.95 3.33 -815.84 -2.71 -25.66 16 6 C 0.59 23.59 7.84 86.62 0.68 24.27 16 7 O -0.61 -27.27 17.17 -4.13 -0.07 -27.34 16 8 C -0.27 -8.86 6.23 -19.04 -0.12 -8.97 16 9 C -0.20 -5.62 9.39 23.62 0.22 -5.40 16 10 C -0.01 -0.20 11.34 83.12 0.94 0.74 16 11 N -0.44 -8.56 3.09 -547.89 -1.69 -10.25 16 12 C 0.06 0.52 11.04 127.77 1.41 1.93 16 13 C 0.07 1.86 11.12 83.91 0.93 2.79 16 14 C 0.09 3.14 4.73 86.73 0.41 3.55 16 15 C 0.16 5.94 3.40 46.18 0.16 6.09 16 16 H 0.09 2.97 8.09 -2.39 -0.02 2.96 16 17 N -0.72 -34.55 4.45 -317.31 -1.41 -35.96 16 18 C -0.24 -12.35 9.96 84.03 0.84 -11.51 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 21 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 22 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H 0.04 1.54 6.28 -2.39 -0.01 1.53 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 2.59 8.04 -2.39 -0.02 2.57 16 30 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 31 H 0.15 4.39 4.80 -2.91 -0.01 4.37 16 32 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.62 8.13 -2.39 -0.02 0.60 16 35 H 0.11 0.50 8.13 -2.38 -0.02 0.48 16 36 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.06 2.26 6.93 -2.39 -0.02 2.24 16 38 H 0.08 2.55 6.82 -2.39 -0.02 2.53 16 39 H 0.37 19.85 6.25 -92.71 -0.58 19.27 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.76 327.64 3.99 -69.77 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.47 Total: 33.10 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 7.10 Total: 7.95 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.53 Total: -130.63 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.07 Total: -27.34 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.76 3.99 -69.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054566019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.814 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds