Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21701 * 119.99602 * 0.02562 * 9 8 6 11 11 C 1.46670 * 120.00113 * 180.02562 * 9 8 6 12 12 C 1.37877 * 126.23505 * 180.02562 * 11 9 8 13 13 C 1.39835 * 107.08829 * 179.97438 * 12 11 9 14 14 C 1.35447 * 107.86157 * 0.02562 * 13 12 11 15 15 N 1.35535 * 108.87586 * 359.76339 * 14 13 12 16 16 H 0.96996 * 125.67691 * 180.25874 * 15 14 13 17 17 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 18 18 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 19 19 C 1.36935 * 120.63603 * 6.46146 * 18 2 1 20 20 H 1.08002 * 119.99660 * 330.34114 * 19 18 2 21 21 C 1.38810 * 120.00726 * 150.33821 * 19 18 2 22 22 N 1.31624 * 119.99291 * 344.65073 * 21 19 18 23 23 Si 1.86796 * 120.00435 * 164.64705 * 21 19 18 24 24 H 1.48498 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47091 * 119.99903 * 23 21 19 26 26 H 1.48491 * 109.47212 * 240.00025 * 23 21 19 27 27 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 28 28 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 29 29 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 31 31 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 32 32 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 33 33 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 34 34 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 35 35 H 1.08006 * 126.45526 * 359.97438 * 12 11 9 36 36 H 1.07996 * 126.06758 * 179.97438 * 13 12 11 37 37 H 1.08006 * 125.56287 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.58713 * 65.15122 * 17 6 5 39 39 H 1.08999 * 109.58856 * 185.43562 * 17 6 5 40 40 H 0.97004 * 119.99680 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2659 -3.6664 -1.3044 11 6 7.4338 -2.9763 -0.8133 12 6 8.1360 -3.9850 -1.4383 13 6 9.4952 -3.7235 -1.2397 14 6 9.5974 -2.5853 -0.5126 15 7 8.3521 -2.1187 -0.2512 16 1 8.1428 -1.3150 0.2500 17 6 3.4685 -0.9434 -1.3212 18 7 2.0225 -0.6979 -1.1954 19 6 1.1534 -1.1128 -2.1689 20 1 0.1395 -1.3794 -1.9096 21 6 1.5755 -1.1906 -3.4890 22 7 2.6877 -0.5928 -3.8605 23 14 0.5651 -2.1436 -4.7381 24 1 -0.6318 -2.7174 -4.0723 25 1 0.1349 -1.2303 -5.8272 26 1 1.3885 -3.2400 -5.3079 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7639 -0.1655 2.1371 31 1 1.6051 -1.7246 1.2920 32 1 4.0045 0.1529 1.1021 33 1 3.9382 -1.3390 2.0701 34 1 5.9829 -1.1379 0.3202 35 1 7.7154 -4.8198 -1.9793 36 1 10.3175 -4.3231 -1.6012 37 1 10.5208 -2.1226 -0.1966 38 1 3.9919 0.0066 -1.4289 39 1 3.6599 -1.5671 -2.1944 40 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071341960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = 26.842197 kcal Electronic energy + Delta-G solvation = -21992.867471 eV Core-core repulsion = 18808.705846 eV Total energy + Delta-G solvation = -3184.161626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16058 -39.04116 -37.44800 -34.44983 -32.80818 -31.31751 -30.63494 -29.87137 -28.92488 -26.00914 -24.97870 -22.72196 -22.14460 -20.84878 -20.16390 -19.94241 -19.46566 -18.44125 -16.42136 -15.66871 -15.57886 -15.00256 -14.67193 -13.94431 -13.85109 -13.78299 -13.54393 -13.39705 -13.29076 -12.75061 -12.61148 -12.37644 -12.26064 -11.83337 -11.45331 -11.12211 -10.87742 -10.69939 -10.54490 -10.39039 -10.24432 -9.95331 -9.83494 -9.47148 -9.45685 -8.99649 -8.61869 -8.40708 -8.16315 -6.59260 -5.72057 -3.16877 1.63191 2.80125 3.10674 3.43157 3.49206 3.52761 3.53928 3.73496 4.56088 4.99456 5.05823 5.31903 5.36409 5.37092 5.44674 5.52942 5.58014 5.66071 5.95679 6.07478 6.09779 6.19668 6.26100 6.30429 6.38670 6.44937 6.48042 6.61343 6.72190 6.72398 6.88470 6.95628 7.05196 7.13029 7.30389 7.37451 7.74224 7.86587 7.91408 8.51360 8.59521 9.26039 9.90494 10.46326 11.36417 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.005575 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.292946 B = 5021.106957 C = 6214.769790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.118 3.882 7 H 0.084 0.916 8 N -0.721 5.721 9 C 0.582 3.418 10 O -0.519 6.519 11 C -0.043 4.043 12 C -0.115 4.115 13 C -0.212 4.212 14 C 0.012 3.988 15 N -0.541 5.541 16 H 0.415 0.585 17 C 0.168 3.832 18 N -0.583 5.583 19 C -0.254 4.254 20 H 0.071 0.929 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.288 1.288 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.385 0.615 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.168 0.832 38 H 0.016 0.984 39 H 0.094 0.906 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.128 -0.044 11.075 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.102 0.898 8 N -0.371 5.371 9 C 0.368 3.632 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.141 4.141 13 C -0.237 4.237 14 C -0.124 4.124 15 N -0.137 5.137 16 H 0.251 0.749 17 C 0.041 3.959 18 N -0.307 5.307 19 C -0.383 4.383 20 H 0.088 0.912 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.214 1.214 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.217 0.783 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.185 0.815 38 H 0.034 0.966 39 H 0.112 0.888 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.534 -0.512 10.572 14.933 hybrid contribution -0.006 0.326 -0.284 0.432 sum 10.528 -0.186 10.289 14.721 Atomic orbital electron populations 1.21801 0.95965 1.01438 1.00185 1.20485 0.93109 0.93523 0.87052 0.95833 1.22049 0.94166 1.01413 0.98968 1.21683 0.97565 0.99517 0.96664 1.22015 0.77305 1.01102 0.98325 0.89757 1.45988 1.08804 1.26382 1.55931 1.17048 0.85138 0.81928 0.79056 1.90887 1.61537 1.42136 1.44856 1.20713 0.89509 0.96664 1.08781 1.21338 0.92720 0.98857 1.01180 1.20870 0.96681 0.99598 1.06545 1.21957 0.87712 0.98362 1.04349 1.42038 1.06147 1.22181 1.43316 0.74857 1.21112 0.83607 0.96844 0.94328 1.44077 1.02523 1.64817 1.19244 1.19168 0.95036 1.38122 0.85978 0.91155 1.25094 0.97781 0.99273 0.97082 1.70009 1.23995 1.43745 1.16627 0.86260 0.79623 0.79692 0.81425 1.20197 1.21815 1.21440 0.94367 0.91978 0.92765 0.92654 0.91992 0.92383 0.93119 0.78324 0.83580 0.84148 0.81489 0.96571 0.88802 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.95 37.16 0.30 -2.27 16 2 C 0.16 3.38 3.49 -67.60 -0.24 3.14 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 5 C -0.12 -1.85 5.35 -26.69 -0.14 -2.00 16 6 C 0.12 2.29 2.61 -67.81 -0.18 2.12 16 7 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 8 N -0.72 -11.88 5.08 -55.00 -0.28 -12.16 16 9 C 0.58 10.83 7.75 -12.86 -0.10 10.73 16 10 O -0.52 -12.13 16.55 5.19 0.09 -12.05 16 11 C -0.04 -0.66 7.06 -81.98 -0.58 -1.24 16 12 C -0.11 -1.69 10.65 -39.12 -0.42 -2.10 16 13 C -0.21 -2.44 10.81 -39.98 -0.43 -2.87 16 14 C 0.01 0.11 11.89 -16.91 -0.20 -0.09 16 15 N -0.54 -5.80 5.99 -9.39 -0.06 -5.86 16 16 H 0.41 3.16 8.19 -40.82 -0.33 2.83 16 17 C 0.17 4.10 4.87 -3.55 -0.02 4.08 16 18 N -0.58 -14.61 3.00 -164.55 -0.49 -15.10 16 19 C -0.25 -7.00 8.58 -15.06 -0.13 -7.13 16 20 H 0.07 1.89 6.23 -52.49 -0.33 1.57 16 21 C 0.01 0.19 4.95 -17.43 -0.09 0.11 16 22 N -0.90 -26.99 11.23 55.49 0.62 -26.36 16 23 Si 0.90 22.64 29.58 -169.99 -5.03 17.62 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16 29 H 0.05 1.04 7.42 -51.92 -0.39 0.66 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.38 4.81 7.73 -40.82 -0.32 4.49 16 35 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.72 6.16 -51.93 -0.32 2.40 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -34.13 324.51 -8.46 -42.59 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.84 Total: 6.23 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.36 Total: 0.21 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.21 Total: -59.48 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.13 -8.46 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071341960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.428 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds