Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21701 * 119.99602 * 0.02562 * 9 8 6 11 11 C 1.46670 * 120.00113 * 180.02562 * 9 8 6 12 12 C 1.37877 * 126.23505 * 180.02562 * 11 9 8 13 13 C 1.39835 * 107.08829 * 179.97438 * 12 11 9 14 14 C 1.35447 * 107.86157 * 0.02562 * 13 12 11 15 15 N 1.35535 * 108.87586 * 359.76339 * 14 13 12 16 16 H 0.96996 * 125.67691 * 180.25874 * 15 14 13 17 17 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 18 18 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 19 19 C 1.36935 * 120.63603 * 6.46146 * 18 2 1 20 20 H 1.08002 * 119.99660 * 330.34114 * 19 18 2 21 21 C 1.38810 * 120.00726 * 150.33821 * 19 18 2 22 22 N 1.31624 * 119.99291 * 344.65073 * 21 19 18 23 23 Si 1.86796 * 120.00435 * 164.64705 * 21 19 18 24 24 H 1.48498 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47091 * 119.99903 * 23 21 19 26 26 H 1.48491 * 109.47212 * 240.00025 * 23 21 19 27 27 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 28 28 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 29 29 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 31 31 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 32 32 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 33 33 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 34 34 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 35 35 H 1.08006 * 126.45526 * 359.97438 * 12 11 9 36 36 H 1.07996 * 126.06758 * 179.97438 * 13 12 11 37 37 H 1.08006 * 125.56287 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.58713 * 65.15122 * 17 6 5 39 39 H 1.08999 * 109.58856 * 185.43562 * 17 6 5 40 40 H 0.97004 * 119.99680 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2659 -3.6664 -1.3044 11 6 7.4338 -2.9763 -0.8133 12 6 8.1360 -3.9850 -1.4383 13 6 9.4952 -3.7235 -1.2397 14 6 9.5974 -2.5853 -0.5126 15 7 8.3521 -2.1187 -0.2512 16 1 8.1428 -1.3150 0.2500 17 6 3.4685 -0.9434 -1.3212 18 7 2.0225 -0.6979 -1.1954 19 6 1.1534 -1.1128 -2.1689 20 1 0.1395 -1.3794 -1.9096 21 6 1.5755 -1.1906 -3.4890 22 7 2.6877 -0.5928 -3.8605 23 14 0.5651 -2.1436 -4.7381 24 1 -0.6318 -2.7174 -4.0723 25 1 0.1349 -1.2303 -5.8272 26 1 1.3885 -3.2400 -5.3079 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7639 -0.1655 2.1371 31 1 1.6051 -1.7246 1.2920 32 1 4.0045 0.1529 1.1021 33 1 3.9382 -1.3390 2.0701 34 1 5.9829 -1.1379 0.3202 35 1 7.7154 -4.8198 -1.9793 36 1 10.3175 -4.3231 -1.6012 37 1 10.5208 -2.1226 -0.1966 38 1 3.9919 0.0066 -1.4289 39 1 3.6599 -1.5671 -2.1944 40 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071341960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 2.001147 kcal Electronic energy + Delta-G solvation = -21993.944660 eV Core-core repulsion = 18808.705846 eV Total energy + Delta-G solvation = -3185.238814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19912 -40.51695 -39.08196 -36.09054 -34.68142 -32.63090 -31.86584 -31.72510 -30.05111 -27.73976 -26.75930 -24.28251 -23.63156 -22.18850 -21.37083 -21.23130 -20.92167 -19.73610 -18.35691 -17.35129 -16.98982 -16.49033 -16.16268 -15.71189 -15.42961 -15.08764 -15.03763 -14.72997 -14.54645 -14.38393 -14.14721 -13.65989 -13.42622 -13.18521 -13.09899 -12.78871 -12.73565 -12.57856 -12.29986 -12.13671 -12.00141 -11.69849 -11.48783 -11.18889 -11.06383 -10.57229 -10.21263 -9.95178 -9.17785 -8.63870 -7.87540 -5.33705 0.48295 1.38831 1.43822 1.51535 1.86339 2.05259 2.27127 2.40199 2.49470 3.29697 3.64005 3.85884 4.00285 4.06550 4.22842 4.34716 4.36590 4.42282 4.53057 4.58713 4.69227 4.77742 4.86761 4.99455 5.04171 5.11463 5.16257 5.24390 5.28336 5.31501 5.40621 5.53846 5.59383 5.68994 5.74644 5.77361 5.92213 6.39323 6.51162 6.65628 7.12939 7.21559 7.87579 8.37567 9.18043 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.005575 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.292946 B = 5021.106957 C = 6214.769790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.132 3.868 7 H 0.051 0.949 8 N -0.706 5.706 9 C 0.577 3.423 10 O -0.584 6.584 11 C -0.081 4.081 12 C -0.133 4.133 13 C -0.228 4.228 14 C 0.050 3.950 15 N -0.525 5.525 16 H 0.431 0.569 17 C 0.180 3.820 18 N -0.603 5.603 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.054 4.054 22 N -0.934 5.934 23 Si 0.956 3.044 24 H -0.261 1.261 25 H -0.287 1.287 26 H -0.302 1.302 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.127 0.873 36 H 0.164 0.836 37 H 0.221 0.779 38 H -0.001 1.001 39 H 0.038 0.962 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.693 1.167 14.145 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.069 0.931 8 N -0.357 5.357 9 C 0.366 3.634 10 O -0.463 6.463 11 C -0.194 4.194 12 C -0.160 4.160 13 C -0.252 4.252 14 C -0.087 4.087 15 N -0.122 5.122 16 H 0.271 0.729 17 C 0.053 3.947 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.249 4.249 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.185 1.185 25 H -0.214 1.214 26 H -0.229 1.229 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.145 0.855 36 H 0.182 0.818 37 H 0.238 0.762 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.092 0.757 13.718 18.302 hybrid contribution -0.391 -0.022 -1.189 1.251 sum 11.701 0.735 12.529 17.159 Atomic orbital electron populations 1.21737 0.94752 1.01129 1.01098 1.20817 0.94323 0.93420 0.86648 0.95934 1.21960 0.94476 1.00933 0.98400 1.21652 0.97223 0.99946 0.95610 1.21550 0.78730 0.99282 0.97889 0.93059 1.45721 1.07909 1.26527 1.55503 1.17595 0.86619 0.81290 0.77851 1.90841 1.63420 1.44484 1.47600 1.20132 0.88096 0.98967 1.12186 1.21520 0.94849 0.98516 1.01151 1.21205 0.95477 1.01032 1.07465 1.22803 0.88461 0.96654 1.00786 1.41997 1.05747 1.21971 1.42506 0.72908 1.20788 0.83894 0.95213 0.94840 1.44375 1.02387 1.65748 1.20256 1.19511 0.95491 1.36440 0.86590 0.90688 1.25823 0.99112 1.00937 0.99072 1.70165 1.25809 1.45828 1.16251 0.85362 0.78591 0.78076 0.79492 1.18526 1.21377 1.22944 0.90161 0.94343 0.93624 0.88346 0.92974 0.90600 0.89537 0.75618 0.85521 0.81799 0.76206 0.98294 0.94322 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.95 71.98 0.57 -4.11 16 2 C 0.15 6.08 3.49 44.97 0.16 6.24 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.64 5.37 30.67 0.16 -3.48 16 5 C -0.11 -3.09 5.35 30.62 0.16 -2.92 16 6 C 0.13 5.21 2.61 45.07 0.12 5.32 16 7 H 0.05 2.39 7.58 -2.38 -0.02 2.37 16 8 N -0.71 -23.37 5.08 -446.12 -2.26 -25.63 16 9 C 0.58 22.51 7.75 86.44 0.67 23.18 16 10 O -0.58 -29.58 16.55 -4.35 -0.07 -29.65 16 11 C -0.08 -2.46 7.06 40.35 0.28 -2.17 16 12 C -0.13 -3.99 10.65 22.57 0.24 -3.75 16 13 C -0.23 -4.70 10.81 22.01 0.24 -4.46 16 14 C 0.05 0.74 11.89 83.48 0.99 1.73 16 15 N -0.52 -9.81 5.99 -183.62 -1.10 -10.91 16 16 H 0.43 5.03 8.19 -92.71 -0.76 4.27 16 17 C 0.18 9.17 4.87 86.31 0.42 9.59 16 18 N -0.60 -30.98 3.00 -674.50 -2.02 -33.00 16 19 C -0.25 -14.24 8.58 84.03 0.72 -13.52 16 20 H 0.08 4.12 6.23 -2.91 -0.02 4.10 16 21 C -0.05 -3.25 4.95 84.86 0.42 -2.83 16 22 N -0.93 -59.19 11.23 21.65 0.24 -58.95 16 23 Si 0.96 48.52 29.58 68.60 2.03 50.55 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.04 1.53 7.65 -2.39 -0.02 1.52 16 29 H 0.04 1.70 7.42 -2.38 -0.02 1.68 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.41 9.49 7.73 -92.71 -0.72 8.78 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.04 2.40 6.16 -2.39 -0.01 2.38 16 40 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -82.77 324.51 1.56 -81.21 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.42 Total: 17.55 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.16 Total: 8.83 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.14 Total: -128.49 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.07 Total: -29.65 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -82.77 1.56 -81.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071341960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.215 kcal (2) G-P(sol) polarization free energy of solvation -82.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds