Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58426 * 2 1 4 4 C 1.53191 * 109.59064 * 120.43502 * 2 1 3 5 5 C 1.53042 * 109.31244 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53867 * 298.63428 * 5 4 2 7 7 H 1.08998 * 109.49791 * 181.31790 * 6 5 4 8 8 N 1.46506 * 109.49823 * 301.41526 * 6 5 4 9 9 C 1.34772 * 119.99930 * 204.83835 * 8 6 5 10 10 O 1.21629 * 120.00276 * 0.02562 * 9 8 6 11 11 C 1.47265 * 120.00113 * 179.97438 * 9 8 6 12 12 C 1.46690 * 126.93924 * 359.69172 * 11 9 8 13 13 C 1.34487 * 106.33071 * 179.82536 * 12 11 9 14 14 N 1.36441 * 108.85565 * 0.43636 * 13 12 11 15 15 H 0.97002 * 124.84997 * 179.69710 * 14 13 12 16 16 C 1.34658 * 110.29874 * 359.70803 * 14 13 12 17 17 C 1.53195 * 109.31414 * 61.36583 * 6 5 4 18 18 N 1.46926 * 109.58401 * 239.72400 * 2 1 3 19 19 C 1.36933 * 120.63171 * 6.62227 * 18 2 1 20 20 H 1.08003 * 120.00110 * 329.26476 * 19 18 2 21 21 C 1.38822 * 119.99989 * 149.26012 * 19 18 2 22 22 N 1.31620 * 119.99894 * 345.80278 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 165.80218 * 21 19 18 24 24 H 1.48502 * 109.47029 * 60.00488 * 23 21 19 25 25 H 1.48504 * 109.46699 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47482 * 300.00186 * 23 21 19 27 27 H 1.09005 * 109.46841 * 180.28040 * 1 2 3 28 28 H 1.09009 * 109.46758 * 300.27303 * 1 2 3 29 29 H 1.08999 * 109.47261 * 60.27640 * 1 2 3 30 30 H 1.08998 * 109.49297 * 294.37338 * 4 2 1 31 31 H 1.08997 * 109.49709 * 54.46680 * 4 2 1 32 32 H 1.09003 * 109.45748 * 178.61046 * 5 4 2 33 33 H 1.08998 * 109.44678 * 58.65069 * 5 4 2 34 34 H 0.97001 * 119.99458 * 24.83514 * 8 6 5 35 35 H 1.08006 * 126.83337 * 359.97438 * 12 11 9 36 36 H 1.07996 * 125.56858 * 180.14725 * 13 12 11 37 37 H 1.08006 * 125.80012 * 180.02562 * 16 14 13 38 38 H 1.09001 * 109.58489 * 185.58066 * 17 6 5 39 39 H 1.09000 * 109.58420 * 65.15023 * 17 6 5 40 40 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7311 1.2444 5 6 3.5676 -0.8496 1.1688 6 6 3.9569 -1.6656 -0.0659 7 1 5.0412 -1.7694 -0.1063 8 7 3.3405 -2.9924 0.0105 9 6 3.8952 -4.0318 -0.6439 10 8 4.9078 -3.8685 -1.2977 11 6 3.2760 -5.3657 -0.5666 12 6 2.0669 -5.7346 0.1777 13 6 1.8739 -7.0474 -0.0412 14 7 2.8707 -7.5110 -0.8494 15 1 2.9586 -8.4290 -1.1502 16 6 3.7151 -6.5121 -1.1695 17 6 3.4650 -0.9451 -1.3252 18 7 2.0224 -0.6979 -1.1955 19 6 1.1536 -1.1097 -2.1704 20 1 0.1438 -1.3909 -1.9103 21 6 1.5707 -1.1658 -3.4933 22 7 2.6865 -0.5701 -3.8573 23 14 0.5484 -2.0867 -4.7567 24 1 -0.8061 -1.4825 -4.8329 25 1 1.2059 -1.9979 -6.0853 26 1 0.4328 -3.5119 -4.3563 27 1 -0.3633 -1.0277 0.0050 28 1 -0.3633 0.5181 0.8876 29 1 -0.3634 0.5095 -0.8924 30 1 1.7661 -0.1697 2.1365 31 1 1.6030 -1.7270 1.2889 32 1 3.9379 -1.3476 2.0649 33 1 4.0059 0.1460 1.0992 34 1 2.5332 -3.1228 0.5323 35 1 1.4525 -5.0813 0.7796 36 1 1.0649 -7.6391 0.3611 37 1 4.5902 -6.6010 -1.7962 38 1 3.6517 -1.5688 -2.1994 39 1 3.9902 0.0040 -1.4318 40 1 2.9781 -0.6095 -4.7816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071526495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = 29.072029 kcal Electronic energy + Delta-G solvation = -22612.833857 eV Core-core repulsion = 19428.768925 eV Total energy + Delta-G solvation = -3184.064933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85439 -38.94778 -37.19016 -33.90191 -32.60083 -31.28856 -30.01570 -29.69233 -28.87336 -26.11145 -24.87823 -22.76000 -22.04489 -20.61673 -20.23918 -19.26627 -18.61197 -18.48629 -16.19589 -15.79051 -15.12264 -14.77822 -14.33868 -13.94468 -13.79789 -13.63627 -13.45967 -13.29133 -12.98014 -12.79945 -12.63087 -12.38797 -11.80905 -11.74598 -11.09404 -11.06906 -10.84972 -10.77046 -10.61314 -10.30236 -10.24098 -9.86939 -9.42293 -9.35163 -9.13750 -8.65666 -8.33649 -8.25302 -8.01974 -6.45972 -5.63904 -3.09120 2.16161 2.63224 3.31506 3.45282 3.51684 3.52436 4.09497 4.28610 4.59786 5.07784 5.28481 5.42266 5.46127 5.48272 5.59954 5.62514 5.69576 5.71627 6.03214 6.12433 6.21747 6.23292 6.30456 6.42683 6.44881 6.54716 6.65524 6.72236 6.83758 6.90238 7.03377 7.08933 7.15488 7.26148 7.55207 7.58245 7.83365 7.94493 8.42275 8.61604 9.12397 9.35097 9.99411 10.56423 11.43949 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.007986 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.041689 B = 3505.130833 C = 4427.361376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.695 5.695 9 C 0.588 3.412 10 O -0.562 6.562 11 C -0.218 4.218 12 C -0.166 4.166 13 C -0.026 4.026 14 N -0.558 5.558 15 H 0.414 0.586 16 C 0.063 3.937 17 C 0.163 3.837 18 N -0.581 5.581 19 C -0.247 4.247 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.285 1.285 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.394 0.606 35 H 0.143 0.857 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.095 0.905 39 H 0.023 0.977 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -10.132 10.773 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.344 5.344 9 C 0.375 3.625 10 O -0.443 6.443 11 C -0.228 4.228 12 C -0.190 4.190 13 C -0.153 4.153 14 N -0.153 5.153 15 H 0.250 0.750 16 C -0.072 4.072 17 C 0.037 3.963 18 N -0.304 5.304 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.212 1.212 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.229 0.771 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.192 0.808 38 H 0.113 0.887 39 H 0.041 0.959 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.324 -10.079 10.109 14.279 hybrid contribution -0.955 -0.925 -0.692 1.498 sum -1.279 -11.004 9.418 14.540 Atomic orbital electron populations 1.21792 0.96223 1.01147 1.00085 1.20458 0.92812 0.93605 0.87280 0.95866 1.22060 0.95253 1.00641 0.98969 1.21684 0.96943 1.00076 0.96927 1.21727 0.96901 0.82088 0.97962 0.90833 1.45598 1.29402 1.08280 1.51108 1.17257 0.83306 0.83199 0.78715 1.90730 1.25952 1.85348 1.42232 1.20564 1.00395 0.93927 1.07891 1.22065 0.98286 0.94708 1.03966 1.21684 0.96082 0.96011 1.01527 1.41567 1.22168 1.10970 1.40605 0.75028 1.21791 0.96732 0.87046 1.01648 1.21167 0.83705 0.96849 0.94620 1.43993 1.02697 1.64835 1.18897 1.18996 0.95291 1.37619 0.85821 0.91725 1.25074 0.97680 0.99375 0.97059 1.69972 1.23640 1.44083 1.16668 0.86470 0.79574 0.80201 0.81091 1.21090 1.21792 1.21168 0.93001 0.94540 0.92080 0.93018 0.92667 0.93117 0.91268 0.77132 0.83970 0.81766 0.80843 0.88717 0.95879 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.96 37.16 0.30 -2.21 16 2 C 0.17 3.35 3.50 -67.60 -0.24 3.11 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.15 5.21 -26.61 -0.14 -2.29 16 5 C -0.12 -1.96 5.58 -26.69 -0.15 -2.11 16 6 C 0.12 2.41 2.81 -67.81 -0.19 2.22 16 7 H 0.07 1.53 7.58 -51.93 -0.39 1.14 16 8 N -0.69 -13.49 4.91 -54.81 -0.27 -13.76 16 9 C 0.59 12.27 7.77 -12.59 -0.10 12.17 16 10 O -0.56 -13.62 16.58 5.25 0.09 -13.53 16 11 C -0.22 -3.79 6.29 -103.35 -0.65 -4.44 16 12 C -0.17 -2.37 10.56 -37.50 -0.40 -2.77 16 13 C -0.03 -0.29 11.89 -16.83 -0.20 -0.49 16 14 N -0.56 -6.01 5.90 -12.85 -0.08 -6.09 16 15 H 0.41 2.80 8.96 -40.82 -0.37 2.44 16 16 C 0.06 0.92 11.69 -16.85 -0.20 0.72 16 17 C 0.16 4.05 4.87 -3.71 -0.02 4.03 16 18 N -0.58 -14.22 2.90 -164.77 -0.48 -14.70 16 19 C -0.25 -6.71 8.54 -15.06 -0.13 -6.84 16 20 H 0.07 1.71 6.26 -52.48 -0.33 1.38 16 21 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 22 N -0.90 -27.11 11.22 55.49 0.62 -26.49 16 23 Si 0.90 22.65 29.58 -169.99 -5.03 17.62 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H 0.05 0.96 7.44 -51.93 -0.39 0.58 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.39 6.93 5.89 -40.82 -0.24 6.69 16 35 H 0.14 1.83 7.70 -52.48 -0.40 1.43 16 36 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.17 2.29 8.06 -52.48 -0.42 1.87 16 38 H 0.09 2.78 6.17 -51.93 -0.32 2.45 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -34.09 321.37 -8.18 -42.27 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.69 Total: 8.61 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.19 Total: 1.22 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -0.20 Total: -61.03 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.09 -8.18 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.342 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds