Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21618 * 119.99842 * 0.02562 * 9 8 6 11 11 C 1.47259 * 119.99767 * 180.02562 * 9 8 6 12 12 C 1.46687 * 126.94318 * 359.68904 * 11 9 8 13 13 C 1.34489 * 106.33332 * 179.88963 * 12 11 9 14 14 N 1.36451 * 108.85179 * 0.37550 * 13 12 11 15 15 H 0.97007 * 124.84581 * 179.77780 * 14 13 12 16 16 C 1.34648 * 110.29930 * 359.74749 * 14 13 12 17 17 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 18 18 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 19 19 C 1.36940 * 120.63146 * 6.46825 * 18 2 1 20 20 H 1.08008 * 119.99359 * 331.06885 * 19 18 2 21 21 C 1.38810 * 120.00700 * 151.07078 * 19 18 2 22 22 N 1.31615 * 120.00193 * 160.80709 * 21 19 18 23 23 Si 1.86806 * 119.99569 * 340.80720 * 21 19 18 24 24 H 1.48500 * 109.47035 * 92.35132 * 23 21 19 25 25 H 1.48496 * 109.46873 * 212.35381 * 23 21 19 26 26 H 1.48507 * 109.47127 * 332.35620 * 23 21 19 27 27 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 28 28 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 29 29 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 31 31 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 32 32 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 33 33 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 34 34 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 35 35 H 1.08001 * 126.83703 * 0.02562 * 12 11 9 36 36 H 1.08000 * 125.57522 * 180.15908 * 13 12 11 37 37 H 1.08013 * 125.80195 * 179.97438 * 16 14 13 38 38 H 1.09005 * 109.58795 * 65.15337 * 17 6 5 39 39 H 1.08994 * 109.58758 * 185.43527 * 17 6 5 40 40 H 0.97005 * 119.99195 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2663 -3.6659 -1.3036 11 6 7.4396 -2.9769 -0.8130 12 6 8.4316 -2.0725 -0.2217 13 6 9.6377 -2.5899 -0.5154 14 7 9.4627 -3.7303 -1.2440 15 1 10.1810 -4.2883 -1.5812 16 6 8.1506 -3.9706 -1.4275 17 6 3.4685 -0.9436 -1.3209 18 7 2.0225 -0.6981 -1.1952 19 6 1.1534 -1.1130 -2.1688 20 1 0.1360 -1.3682 -1.9112 21 6 1.5799 -1.2055 -3.4865 22 7 0.9061 -1.9397 -4.3462 23 14 3.1101 -0.2878 -4.0395 24 1 4.2939 -1.1746 -3.9072 25 1 2.9553 0.1229 -5.4581 26 1 3.2976 0.9176 -3.1926 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.7637 -0.1652 2.1372 31 1 1.6049 -1.7245 1.2923 32 1 4.0045 0.1530 1.1022 33 1 3.9381 -1.3388 2.0704 34 1 5.9828 -1.1379 0.3206 35 1 8.2330 -1.1717 0.3400 36 1 10.5893 -2.1695 -0.2253 37 1 7.7309 -4.8059 -1.9686 38 1 3.9920 0.0065 -1.4288 39 1 3.6599 -1.5673 -2.1941 40 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071526496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = 32.466801 kcal Electronic energy + Delta-G solvation = -22055.657564 eV Core-core repulsion = 18871.739840 eV Total energy + Delta-G solvation = -3183.917724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12309 -39.15010 -37.56853 -34.37905 -32.71864 -31.51304 -30.58802 -30.17751 -29.14439 -26.17689 -24.84853 -23.02567 -22.32370 -20.89331 -20.34000 -19.61418 -19.10956 -18.63678 -16.43607 -16.05085 -15.59251 -14.94798 -14.63926 -14.47803 -13.93383 -13.84202 -13.60542 -13.44220 -13.34092 -13.08737 -12.89710 -12.30978 -12.13688 -11.99261 -11.61985 -11.33845 -11.17967 -10.69482 -10.62176 -10.27694 -10.17914 -9.91082 -9.55376 -9.50143 -9.26940 -8.94157 -8.68208 -8.46252 -8.31233 -6.81136 -5.81665 -3.18849 1.88385 2.35108 3.06188 3.49235 3.57952 3.60611 3.72394 3.88989 4.67505 4.81889 5.02454 5.07327 5.17947 5.32458 5.33582 5.40801 5.56346 5.61031 5.76005 5.85751 5.98074 6.03600 6.13735 6.21456 6.32960 6.36108 6.42665 6.56313 6.62792 6.63688 6.74875 6.77940 6.85283 7.03246 7.08979 7.18031 7.31122 8.01115 8.10627 8.48229 8.76845 9.06509 9.86317 10.23173 11.34016 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.005891 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.187329 B = 4751.478448 C = 5693.439332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.127 4.127 5 C -0.116 4.116 6 C 0.128 3.872 7 H 0.091 0.909 8 N -0.721 5.721 9 C 0.582 3.418 10 O -0.541 6.541 11 C -0.227 4.227 12 C -0.171 4.171 13 C -0.022 4.022 14 N -0.556 5.556 15 H 0.416 0.584 16 C 0.071 3.929 17 C 0.121 3.879 18 N -0.598 5.598 19 C -0.259 4.259 20 H 0.092 0.908 21 C 0.028 3.972 22 N -0.908 5.908 23 Si 0.879 3.121 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.272 1.272 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.393 0.607 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.023 0.977 39 H 0.079 0.921 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.734 0.790 11.588 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.022 3.978 7 H 0.109 0.891 8 N -0.372 5.372 9 C 0.370 3.630 10 O -0.419 6.419 11 C -0.237 4.237 12 C -0.195 4.195 13 C -0.149 4.149 14 N -0.151 5.151 15 H 0.253 0.747 16 C -0.065 4.065 17 C -0.006 4.006 18 N -0.323 5.323 19 C -0.387 4.387 20 H 0.109 0.891 21 C -0.171 4.171 22 N -0.551 5.551 23 Si 0.710 3.290 24 H -0.214 1.214 25 H -0.234 1.234 26 H -0.197 1.197 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.226 0.774 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.195 0.805 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.257 0.094 10.985 19.621 hybrid contribution 1.657 0.604 -0.418 1.813 sum 17.915 0.698 10.567 20.811 Atomic orbital electron populations 1.21812 0.95294 1.01964 1.00359 1.20496 0.93651 0.93342 0.86239 0.95345 1.22049 0.94180 1.01707 0.98781 1.21683 0.97461 0.99570 0.96734 1.21693 0.78286 1.01083 0.96721 0.89137 1.45889 1.07995 1.27017 1.56265 1.17407 0.86256 0.81220 0.78142 1.90832 1.63226 1.42362 1.45521 1.20532 0.92848 1.00095 1.10249 1.22066 0.91302 1.00938 1.05242 1.21738 0.99691 0.90692 1.02826 1.41624 1.07441 1.22338 1.43729 0.74747 1.21879 0.82408 1.00676 1.01555 1.21737 0.85299 0.96870 0.96696 1.44435 1.01630 1.65511 1.20720 1.18899 0.95566 1.38608 0.85635 0.89050 1.25276 0.97308 0.98604 0.95883 1.69819 1.41262 1.39390 1.04610 0.86982 0.84091 0.81277 0.76699 1.21389 1.23375 1.19732 0.94165 0.91754 0.92363 0.92279 0.91615 0.92221 0.92464 0.77355 0.83829 0.81558 0.80530 0.95933 0.90335 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.94 37.16 0.30 -2.28 16 2 C 0.17 3.37 3.49 -67.61 -0.24 3.13 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 5 C -0.12 -1.82 5.35 -26.68 -0.14 -1.96 16 6 C 0.13 2.49 2.61 -67.81 -0.18 2.31 16 7 H 0.09 2.02 7.58 -51.93 -0.39 1.63 16 8 N -0.72 -12.21 5.08 -54.81 -0.28 -12.49 16 9 C 0.58 10.98 7.78 -12.59 -0.10 10.88 16 10 O -0.54 -12.73 16.57 5.26 0.09 -12.64 16 11 C -0.23 -3.37 6.29 -103.35 -0.65 -4.02 16 12 C -0.17 -1.92 10.56 -37.50 -0.40 -2.32 16 13 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 14 N -0.56 -4.76 5.90 -12.84 -0.08 -4.83 16 15 H 0.42 1.99 8.96 -40.82 -0.37 1.62 16 16 C 0.07 0.87 11.69 -16.85 -0.20 0.68 16 17 C 0.12 2.85 3.78 -3.56 -0.01 2.84 16 18 N -0.60 -14.75 2.76 -164.56 -0.45 -15.20 16 19 C -0.26 -7.45 9.05 -15.06 -0.14 -7.59 16 20 H 0.09 2.74 6.39 -52.48 -0.34 2.40 16 21 C 0.03 0.86 5.25 -17.43 -0.09 0.77 16 22 N -0.91 -29.14 13.97 55.49 0.78 -28.37 16 23 Si 0.88 24.05 24.35 -169.99 -4.14 19.91 16 24 H -0.29 -7.97 6.62 56.52 0.37 -7.59 16 25 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 26 H -0.27 -7.21 6.62 56.52 0.37 -6.84 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.31 7.64 -51.93 -0.40 0.92 16 29 H 0.06 1.15 7.42 -51.93 -0.39 0.77 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 5.23 7.73 -40.82 -0.32 4.91 16 35 H 0.14 1.31 7.70 -52.49 -0.40 0.91 16 36 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.02 0.53 7.04 -51.93 -0.37 0.16 16 39 H 0.08 2.17 4.62 -51.93 -0.24 1.93 16 40 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -36.99 318.39 -7.25 -44.24 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.77 Total: 4.78 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.19 Total: -0.20 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.03 Total: -60.89 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.14 Total: 19.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.99 -7.25 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.707 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds