Wall clock time and date at job start Mon Mar 30 2020 02:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70161 * 2 1 4 4 C 1.53185 * 109.58936 * 239.64048 * 2 1 3 5 5 C 1.53106 * 109.33514 * 185.57551 * 4 2 1 6 6 C 1.53039 * 109.49819 * 61.34192 * 5 4 2 7 7 H 1.09009 * 109.49596 * 178.68701 * 6 5 4 8 8 N 1.46501 * 109.49913 * 58.62316 * 6 5 4 9 9 C 1.34777 * 120.00099 * 154.78364 * 8 6 5 10 10 O 1.21634 * 120.00095 * 0.27984 * 9 8 6 11 11 C 1.47263 * 120.00075 * 180.27713 * 9 8 6 12 12 C 1.46692 * 126.93947 * 359.68529 * 11 9 8 13 13 C 1.34486 * 106.33005 * 179.83236 * 12 11 9 14 14 N 1.36452 * 108.85599 * 0.43575 * 13 12 11 15 15 H 0.97002 * 124.85501 * 179.73365 * 14 13 12 16 16 C 1.34662 * 110.29970 * 359.71321 * 14 13 12 17 17 C 1.53183 * 109.34370 * 298.65309 * 6 5 4 18 18 N 1.46925 * 108.77739 * 54.64985 * 17 6 5 19 19 C 1.36937 * 120.62908 * 126.36580 * 18 17 6 20 20 H 1.08003 * 120.00443 * 221.18558 * 19 18 17 21 21 C 1.38813 * 120.00156 * 41.19665 * 19 18 17 22 22 N 1.31617 * 119.99715 * 214.83806 * 21 19 18 23 23 Si 1.86804 * 119.99901 * 34.82712 * 21 19 18 24 24 H 1.48500 * 109.46805 * 84.63573 * 23 21 19 25 25 H 1.48500 * 109.46859 * 204.63036 * 23 21 19 26 26 H 1.48491 * 109.47231 * 324.63714 * 23 21 19 27 27 H 1.09001 * 109.47504 * 299.64965 * 1 2 3 28 28 H 1.09001 * 109.47336 * 59.64799 * 1 2 3 29 29 H 1.08999 * 109.47119 * 179.65182 * 1 2 3 30 30 H 1.09002 * 109.50115 * 305.52974 * 4 2 1 31 31 H 1.09006 * 109.49775 * 65.59515 * 4 2 1 32 32 H 1.08995 * 109.45015 * 301.35274 * 5 4 2 33 33 H 1.08997 * 109.50598 * 181.36890 * 5 4 2 34 34 H 0.97001 * 119.99867 * 335.06323 * 8 6 5 35 35 H 1.07990 * 126.83360 * 0.02562 * 12 11 9 36 36 H 1.07993 * 125.57574 * 180.14529 * 13 12 11 37 37 H 1.08002 * 125.80210 * 179.97438 * 16 14 13 38 38 H 1.09003 * 109.59296 * 174.43779 * 17 6 5 39 39 H 1.09003 * 109.59096 * 294.72186 * 17 6 5 40 40 H 0.97002 * 119.99585 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5682 -0.8483 -1.1705 6 6 3.9569 -1.6656 0.0636 7 1 5.0412 -1.7700 0.1041 8 7 3.3405 -2.9924 -0.0145 9 6 3.8991 -4.0341 0.6329 10 8 4.9121 -3.8717 1.2863 11 6 3.2830 -5.3690 0.5493 12 6 2.0662 -5.7340 -0.1843 13 6 1.8840 -7.0512 0.0172 14 7 2.8836 -7.5168 0.8209 15 1 2.9745 -8.4363 1.1163 16 6 3.7262 -6.5177 1.1450 17 6 3.4650 -0.9469 1.3238 18 7 2.0226 -0.6994 1.1946 19 6 1.1537 -1.1134 2.1686 20 1 0.2056 -1.5527 1.8955 21 6 1.4913 -0.9682 3.5073 22 7 1.1096 -1.8726 4.3840 23 14 2.4875 0.5106 4.0642 24 1 1.5764 1.6575 4.3086 25 1 3.2103 0.1768 5.3177 26 1 3.4675 0.8731 3.0090 27 1 -0.3634 0.5084 0.8931 28 1 -0.3634 0.5193 -0.8868 29 1 -0.3633 -1.0276 -0.0062 30 1 1.6030 -1.7254 -1.2912 31 1 1.7656 -0.1672 -2.1368 32 1 4.0068 0.1470 -1.0997 33 1 3.9389 -1.3454 -2.0668 34 1 2.5327 -3.1219 -0.5356 35 1 1.4429 -5.0766 -0.7720 36 1 1.0757 -7.6426 -0.3867 37 1 4.6028 -6.6079 1.7694 38 1 3.6517 -1.5716 2.1973 39 1 3.9921 0.0010 1.4332 40 1 1.3458 -1.7713 5.3193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071526497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:53 Heat of formation + Delta-G solvation = 31.820618 kcal Electronic energy + Delta-G solvation = -22567.616093 eV Core-core repulsion = 19383.670348 eV Total energy + Delta-G solvation = -3183.945745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82248 -39.08624 -37.31876 -33.98942 -32.56979 -31.31456 -30.59689 -29.94584 -28.84996 -26.27771 -24.77808 -22.86088 -22.26358 -20.60462 -20.22201 -19.33667 -18.73773 -18.51383 -16.32316 -15.87553 -15.10816 -14.99374 -14.37078 -14.21582 -13.79890 -13.64428 -13.48282 -13.36959 -13.01817 -12.82098 -12.79004 -12.35220 -12.08656 -11.77632 -11.63382 -11.24735 -11.13118 -10.82461 -10.54793 -10.36622 -10.16403 -9.81534 -9.68371 -9.40538 -9.20537 -8.62841 -8.37928 -8.18946 -8.01923 -6.55753 -5.96493 -3.25505 2.17869 2.67072 3.34716 3.50136 3.60032 3.64499 4.02799 4.24617 4.69630 5.01847 5.11878 5.31071 5.31733 5.39937 5.45216 5.55747 5.57154 5.71130 5.95981 6.06297 6.10012 6.14060 6.25167 6.31954 6.37345 6.45081 6.46614 6.60024 6.64594 6.69642 6.94069 7.05658 7.08924 7.11920 7.17772 7.34488 7.59834 8.14899 8.34408 8.53318 9.05211 9.12112 9.84845 10.33755 11.18998 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.007032 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.817477 B = 3981.087320 C = 4549.135953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.127 3.873 7 H 0.077 0.923 8 N -0.695 5.695 9 C 0.592 3.408 10 O -0.566 6.566 11 C -0.218 4.218 12 C -0.163 4.163 13 C -0.025 4.025 14 N -0.558 5.558 15 H 0.414 0.586 16 C 0.066 3.934 17 C 0.134 3.866 18 N -0.589 5.589 19 C -0.269 4.269 20 H 0.074 0.926 21 C 0.051 3.949 22 N -0.878 5.878 23 Si 0.841 3.159 24 H -0.290 1.290 25 H -0.299 1.299 26 H -0.261 1.261 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.397 0.603 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -7.548 -12.306 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.021 3.979 7 H 0.095 0.905 8 N -0.345 5.345 9 C 0.380 3.620 10 O -0.446 6.446 11 C -0.228 4.228 12 C -0.187 4.187 13 C -0.152 4.152 14 N -0.153 5.153 15 H 0.250 0.750 16 C -0.070 4.070 17 C 0.007 3.993 18 N -0.313 5.313 19 C -0.397 4.397 20 H 0.091 0.909 21 C -0.151 4.151 22 N -0.517 5.517 23 Si 0.668 3.332 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.186 1.186 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.191 0.809 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.765 -7.602 -11.641 14.175 hybrid contribution 0.047 0.437 0.517 0.679 sum 2.813 -7.164 -11.124 13.527 Atomic orbital electron populations 1.21748 0.95517 1.01619 1.00113 1.20583 0.93452 0.93329 0.87024 0.95711 1.22052 0.95015 1.00950 0.98902 1.21697 0.97121 0.99970 0.96886 1.21479 0.97008 0.82382 0.97052 0.90528 1.45554 1.29418 1.07854 1.51664 1.17265 0.83080 0.83277 0.78337 1.90715 1.26093 1.85545 1.42282 1.20471 1.00283 0.93674 1.08394 1.22037 0.98023 0.94586 1.04099 1.21681 0.95941 0.95879 1.01744 1.41565 1.22177 1.10861 1.40650 0.75012 1.21772 0.96721 0.87070 1.01389 1.21695 0.85234 0.96516 0.95866 1.44279 1.02052 1.65082 1.19934 1.18482 1.02039 1.34915 0.84250 0.90868 1.25571 0.96639 0.96901 0.96037 1.70093 1.47181 1.31252 1.03178 0.87374 0.80708 0.86937 0.78133 1.21772 1.22560 1.18593 0.91909 0.94504 0.92655 0.92313 0.92719 0.91236 0.92628 0.76830 0.84012 0.81756 0.80881 0.90910 0.95312 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.07 37.16 0.30 -2.11 16 2 C 0.16 3.11 3.50 -67.60 -0.24 2.87 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.02 5.21 -26.58 -0.14 -2.16 16 5 C -0.12 -1.82 5.59 -26.66 -0.15 -1.97 16 6 C 0.13 2.40 2.81 -67.81 -0.19 2.21 16 7 H 0.08 1.46 7.57 -51.92 -0.39 1.07 16 8 N -0.70 -13.04 4.91 -54.81 -0.27 -13.31 16 9 C 0.59 12.12 7.78 -12.59 -0.10 12.02 16 10 O -0.57 -13.30 16.57 5.25 0.09 -13.21 16 11 C -0.22 -3.80 6.29 -103.35 -0.65 -4.45 16 12 C -0.16 -2.38 10.56 -37.50 -0.40 -2.77 16 13 C -0.02 -0.29 11.89 -16.82 -0.20 -0.49 16 14 N -0.56 -6.14 5.90 -12.85 -0.08 -6.21 16 15 H 0.41 2.90 8.96 -40.82 -0.37 2.53 16 16 C 0.07 0.97 11.69 -16.84 -0.20 0.77 16 17 C 0.13 3.05 4.20 -3.72 -0.02 3.03 16 18 N -0.59 -13.67 2.38 -164.78 -0.39 -14.07 16 19 C -0.27 -7.33 8.42 -15.06 -0.13 -7.46 16 20 H 0.07 2.13 6.83 -52.48 -0.36 1.77 16 21 C 0.05 1.49 4.82 -17.43 -0.08 1.40 16 22 N -0.88 -27.09 13.97 55.49 0.78 -26.31 16 23 Si 0.84 22.23 27.39 -169.99 -4.66 17.58 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 26 H -0.26 -6.65 5.24 56.52 0.30 -6.36 16 27 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16 30 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.40 6.80 5.89 -40.82 -0.24 6.56 16 35 H 0.14 1.87 7.69 -52.49 -0.40 1.47 16 36 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.07 1.95 7.01 -51.93 -0.36 1.59 16 39 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -34.50 318.72 -7.70 -42.20 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.79 Total: 7.64 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.89 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.04 Total: -59.90 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.66 Total: 17.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.50 -7.70 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds