Wall clock time and date at job start Mon Mar 30 2020 02:06:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.70161 * 2 1
4 4 C 1.53185 * 109.58936 * 239.64048 * 2 1 3
5 5 C 1.53106 * 109.33514 * 185.57551 * 4 2 1
6 6 C 1.53039 * 109.49819 * 61.34192 * 5 4 2
7 7 H 1.09009 * 109.49596 * 178.68701 * 6 5 4
8 8 N 1.46501 * 109.49913 * 58.62316 * 6 5 4
9 9 C 1.34777 * 120.00099 * 154.78364 * 8 6 5
10 10 O 1.21634 * 120.00095 * 0.27984 * 9 8 6
11 11 C 1.47263 * 120.00075 * 180.27713 * 9 8 6
12 12 C 1.46692 * 126.93947 * 359.68529 * 11 9 8
13 13 C 1.34486 * 106.33005 * 179.83236 * 12 11 9
14 14 N 1.36452 * 108.85599 * 0.43575 * 13 12 11
15 15 H 0.97002 * 124.85501 * 179.73365 * 14 13 12
16 16 C 1.34662 * 110.29970 * 359.71321 * 14 13 12
17 17 C 1.53183 * 109.34370 * 298.65309 * 6 5 4
18 18 N 1.46925 * 108.77739 * 54.64985 * 17 6 5
19 19 C 1.36937 * 120.62908 * 126.36580 * 18 17 6
20 20 H 1.08003 * 120.00443 * 221.18558 * 19 18 17
21 21 C 1.38813 * 120.00156 * 41.19665 * 19 18 17
22 22 N 1.31617 * 119.99715 * 214.83806 * 21 19 18
23 23 Si 1.86804 * 119.99901 * 34.82712 * 21 19 18
24 24 H 1.48500 * 109.46805 * 84.63573 * 23 21 19
25 25 H 1.48500 * 109.46859 * 204.63036 * 23 21 19
26 26 H 1.48491 * 109.47231 * 324.63714 * 23 21 19
27 27 H 1.09001 * 109.47504 * 299.64965 * 1 2 3
28 28 H 1.09001 * 109.47336 * 59.64799 * 1 2 3
29 29 H 1.08999 * 109.47119 * 179.65182 * 1 2 3
30 30 H 1.09002 * 109.50115 * 305.52974 * 4 2 1
31 31 H 1.09006 * 109.49775 * 65.59515 * 4 2 1
32 32 H 1.08995 * 109.45015 * 301.35274 * 5 4 2
33 33 H 1.08997 * 109.50598 * 181.36890 * 5 4 2
34 34 H 0.97001 * 119.99867 * 335.06323 * 8 6 5
35 35 H 1.07990 * 126.83360 * 0.02562 * 12 11 9
36 36 H 1.07993 * 125.57574 * 180.14529 * 13 12 11
37 37 H 1.08002 * 125.80210 * 179.97438 * 16 14 13
38 38 H 1.09003 * 109.59296 * 174.43779 * 17 6 5
39 39 H 1.09003 * 109.59096 * 294.72186 * 17 6 5
40 40 H 0.97002 * 119.99585 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8974 1.0262 0.0000
4 6 2.0436 -0.7294 -1.2453
5 6 3.5682 -0.8483 -1.1705
6 6 3.9569 -1.6656 0.0636
7 1 5.0412 -1.7700 0.1041
8 7 3.3405 -2.9924 -0.0145
9 6 3.8991 -4.0341 0.6329
10 8 4.9121 -3.8717 1.2863
11 6 3.2830 -5.3690 0.5493
12 6 2.0662 -5.7340 -0.1843
13 6 1.8840 -7.0512 0.0172
14 7 2.8836 -7.5168 0.8209
15 1 2.9745 -8.4363 1.1163
16 6 3.7262 -6.5177 1.1450
17 6 3.4650 -0.9469 1.3238
18 7 2.0226 -0.6994 1.1946
19 6 1.1537 -1.1134 2.1686
20 1 0.2056 -1.5527 1.8955
21 6 1.4913 -0.9682 3.5073
22 7 1.1096 -1.8726 4.3840
23 14 2.4875 0.5106 4.0642
24 1 1.5764 1.6575 4.3086
25 1 3.2103 0.1768 5.3177
26 1 3.4675 0.8731 3.0090
27 1 -0.3634 0.5084 0.8931
28 1 -0.3634 0.5193 -0.8868
29 1 -0.3633 -1.0276 -0.0062
30 1 1.6030 -1.7254 -1.2912
31 1 1.7656 -0.1672 -2.1368
32 1 4.0068 0.1470 -1.0997
33 1 3.9389 -1.3454 -2.0668
34 1 2.5327 -3.1219 -0.5356
35 1 1.4429 -5.0766 -0.7720
36 1 1.0757 -7.6426 -0.3867
37 1 4.6028 -6.6079 1.7694
38 1 3.6517 -1.5716 2.1973
39 1 3.9921 0.0010 1.4332
40 1 1.3458 -1.7713 5.3193
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071526497.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:06:53
Heat of formation + Delta-G solvation = 31.820618 kcal
Electronic energy + Delta-G solvation = -22567.616093 eV
Core-core repulsion = 19383.670348 eV
Total energy + Delta-G solvation = -3183.945745 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.153 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.82248 -39.08624 -37.31876 -33.98942 -32.56979 -31.31456 -30.59689 -29.94584
-28.84996 -26.27771 -24.77808 -22.86088 -22.26358 -20.60462 -20.22201 -19.33667
-18.73773 -18.51383 -16.32316 -15.87553 -15.10816 -14.99374 -14.37078 -14.21582
-13.79890 -13.64428 -13.48282 -13.36959 -13.01817 -12.82098 -12.79004 -12.35220
-12.08656 -11.77632 -11.63382 -11.24735 -11.13118 -10.82461 -10.54793 -10.36622
-10.16403 -9.81534 -9.68371 -9.40538 -9.20537 -8.62841 -8.37928 -8.18946
-8.01923 -6.55753 -5.96493 -3.25505 2.17869 2.67072 3.34716 3.50136
3.60032 3.64499 4.02799 4.24617 4.69630 5.01847 5.11878 5.31071
5.31733 5.39937 5.45216 5.55747 5.57154 5.71130 5.95981 6.06297
6.10012 6.14060 6.25167 6.31954 6.37345 6.45081 6.46614 6.60024
6.64594 6.69642 6.94069 7.05658 7.08924 7.11920 7.17772 7.34488
7.59834 8.14899 8.34408 8.53318 9.05211 9.12112 9.84845 10.33755
11.18998
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.015808 B = 0.007032 C = 0.006154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1770.817477 B = 3981.087320 C = 4549.135953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.162 3.838
3 H 0.025 0.975
4 C -0.130 4.130
5 C -0.119 4.119
6 C 0.127 3.873
7 H 0.077 0.923
8 N -0.695 5.695
9 C 0.592 3.408
10 O -0.566 6.566
11 C -0.218 4.218
12 C -0.163 4.163
13 C -0.025 4.025
14 N -0.558 5.558
15 H 0.414 0.586
16 C 0.066 3.934
17 C 0.134 3.866
18 N -0.589 5.589
19 C -0.269 4.269
20 H 0.074 0.926
21 C 0.051 3.949
22 N -0.878 5.878
23 Si 0.841 3.159
24 H -0.290 1.290
25 H -0.299 1.299
26 H -0.261 1.261
27 H 0.062 0.938
28 H 0.036 0.964
29 H 0.054 0.946
30 H 0.058 0.942
31 H 0.054 0.946
32 H 0.069 0.931
33 H 0.055 0.945
34 H 0.397 0.603
35 H 0.142 0.858
36 H 0.165 0.835
37 H 0.174 0.826
38 H 0.072 0.928
39 H 0.029 0.971
40 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.104 -7.548 -12.306 14.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.056 3.944
3 H 0.043 0.957
4 C -0.169 4.169
5 C -0.157 4.157
6 C 0.021 3.979
7 H 0.095 0.905
8 N -0.345 5.345
9 C 0.380 3.620
10 O -0.446 6.446
11 C -0.228 4.228
12 C -0.187 4.187
13 C -0.152 4.152
14 N -0.153 5.153
15 H 0.250 0.750
16 C -0.070 4.070
17 C 0.007 3.993
18 N -0.313 5.313
19 C -0.397 4.397
20 H 0.091 0.909
21 C -0.151 4.151
22 N -0.517 5.517
23 Si 0.668 3.332
24 H -0.218 1.218
25 H -0.226 1.226
26 H -0.186 1.186
27 H 0.081 0.919
28 H 0.055 0.945
29 H 0.073 0.927
30 H 0.077 0.923
31 H 0.073 0.927
32 H 0.088 0.912
33 H 0.074 0.926
34 H 0.232 0.768
35 H 0.160 0.840
36 H 0.182 0.818
37 H 0.191 0.809
38 H 0.091 0.909
39 H 0.047 0.953
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.765 -7.602 -11.641 14.175
hybrid contribution 0.047 0.437 0.517 0.679
sum 2.813 -7.164 -11.124 13.527
Atomic orbital electron populations
1.21748 0.95517 1.01619 1.00113 1.20583 0.93452 0.93329 0.87024
0.95711 1.22052 0.95015 1.00950 0.98902 1.21697 0.97121 0.99970
0.96886 1.21479 0.97008 0.82382 0.97052 0.90528 1.45554 1.29418
1.07854 1.51664 1.17265 0.83080 0.83277 0.78337 1.90715 1.26093
1.85545 1.42282 1.20471 1.00283 0.93674 1.08394 1.22037 0.98023
0.94586 1.04099 1.21681 0.95941 0.95879 1.01744 1.41565 1.22177
1.10861 1.40650 0.75012 1.21772 0.96721 0.87070 1.01389 1.21695
0.85234 0.96516 0.95866 1.44279 1.02052 1.65082 1.19934 1.18482
1.02039 1.34915 0.84250 0.90868 1.25571 0.96639 0.96901 0.96037
1.70093 1.47181 1.31252 1.03178 0.87374 0.80708 0.86937 0.78133
1.21772 1.22560 1.18593 0.91909 0.94504 0.92655 0.92313 0.92719
0.91236 0.92628 0.76830 0.84012 0.81756 0.80881 0.90910 0.95312
0.92945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.41 8.07 37.16 0.30 -2.11 16
2 C 0.16 3.11 3.50 -67.60 -0.24 2.87 16
3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
4 C -0.13 -2.02 5.21 -26.58 -0.14 -2.16 16
5 C -0.12 -1.82 5.59 -26.66 -0.15 -1.97 16
6 C 0.13 2.40 2.81 -67.81 -0.19 2.21 16
7 H 0.08 1.46 7.57 -51.92 -0.39 1.07 16
8 N -0.70 -13.04 4.91 -54.81 -0.27 -13.31 16
9 C 0.59 12.12 7.78 -12.59 -0.10 12.02 16
10 O -0.57 -13.30 16.57 5.25 0.09 -13.21 16
11 C -0.22 -3.80 6.29 -103.35 -0.65 -4.45 16
12 C -0.16 -2.38 10.56 -37.50 -0.40 -2.77 16
13 C -0.02 -0.29 11.89 -16.82 -0.20 -0.49 16
14 N -0.56 -6.14 5.90 -12.85 -0.08 -6.21 16
15 H 0.41 2.90 8.96 -40.82 -0.37 2.53 16
16 C 0.07 0.97 11.69 -16.84 -0.20 0.77 16
17 C 0.13 3.05 4.20 -3.72 -0.02 3.03 16
18 N -0.59 -13.67 2.38 -164.78 -0.39 -14.07 16
19 C -0.27 -7.33 8.42 -15.06 -0.13 -7.46 16
20 H 0.07 2.13 6.83 -52.48 -0.36 1.77 16
21 C 0.05 1.49 4.82 -17.43 -0.08 1.40 16
22 N -0.88 -27.09 13.97 55.49 0.78 -26.31 16
23 Si 0.84 22.23 27.39 -169.99 -4.66 17.58 16
24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16
25 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16
26 H -0.26 -6.65 5.24 56.52 0.30 -6.36 16
27 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16
28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
29 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16
30 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16
31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.40 6.80 5.89 -40.82 -0.24 6.56 16
35 H 0.14 1.87 7.69 -52.49 -0.40 1.47 16
36 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16
37 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16
38 H 0.07 1.95 7.01 -51.93 -0.36 1.59 16
39 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16
40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16
LS Contribution 318.72 15.07 4.80 4.80
Total: -1.00 -34.50 318.72 -7.70 -42.20
By element:
Atomic # 1 Polarization: 13.43 SS G_CDS: -5.79 Total: 7.64 kcal
Atomic # 6 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.89 kcal
Atomic # 7 Polarization: -59.94 SS G_CDS: 0.04 Total: -59.90 kcal
Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -4.66 Total: 17.58 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -34.50 -7.70 -42.20 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071526497.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal
(2) G-P(sol) polarization free energy of solvation -34.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds